BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1111.p (386 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774770.1| phenol/naphthocyclinone hydroxylase [Herbasp... 702 0.0 ref|YP_001895786.1| acyl-CoA dehydrogenase type 2 domain [Burkho... 494 e-138 ref|YP_373255.1| Acyl-CoA dehydrogenase-like [Burkholderia sp. 3... 476 e-132 ref|ZP_04942345.1| Acyl-CoA dehydrogenase [Burkholderia cenocepa... 474 e-131 ref|YP_837247.1| acyl-CoA dehydrogenase type 2 [Burkholderia cen... 473 e-131 >ref|YP_003774770.1| phenol/naphthocyclinone hydroxylase [Herbaspirillum seropedicae SmR1] gb|ADJ62862.1| phenol/naphthocyclinone hydroxylase protein [Herbaspirillum seropedicae SmR1] Length = 386 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 372/386 (96%), Positives = 380/386 (98%) Query: 1 MSVMENPAALAAREEDALVPLLAEIRARREEFAAQRFVPKDFIAQLKKAGVYRAATPQCF 60 MSVMENPAALAAREEDAL PLLAEIRARR+EFAAQRFVPKDFIAQLKKAGVYRAATPQCF Sbjct: 1 MSVMENPAALAAREEDALAPLLAEIRARRDEFAAQRFVPKDFIAQLKKAGVYRAATPQCF 60 Query: 61 GGSGLSPMGFLQMIERISVADASVGWVASFGSASVYLAALPRETQAKLYAKGPDLTFAGG 120 GGSG+SPMGFLQ+IERIS ADASVGWVASFGSASVYLAALPRETQAKLYAKGPDLTFAGG Sbjct: 61 GGSGMSPMGFLQLIERISAADASVGWVASFGSASVYLAALPRETQAKLYAKGPDLTFAGG 120 Query: 121 LFPLQPAEQVEGGWMVNGTWKFASGCKGADVLGVGIGAAVPGQAGSKPRTAVLPPEQVEI 180 LFP+QPA QVEGGWMV+GTWKFASG KGADVLGVGIGAAVPGQAGSKPRTAVLPPEQVEI Sbjct: 121 LFPIQPATQVEGGWMVDGTWKFASGSKGADVLGVGIGAAVPGQAGSKPRTAVLPPEQVEI 180 Query: 181 IDNWDVMGLVGTGSHDLKVSQQFVPEEWTFIRGGVPTIDEPLYRYPTIAYAAQVLAVVNL 240 IDNWDVMGL+GTGSHDLKVSQQFVPEEWTFIRGG PTIDEPLYRYPTIAYAAQVLAVVNL Sbjct: 181 IDNWDVMGLLGTGSHDLKVSQQFVPEEWTFIRGGEPTIDEPLYRYPTIAYAAQVLAVVNL 240 Query: 241 GVGRAAIDEINQMSGGRVAITGAPKLADRSYVRIEVAKAEAKLRSARAFLYDATGEVWHS 300 GV RAAIDEINQMSGGRVAITGAPKLADRSYVRIEVAKAEAKLRSARAFLYDATGEVW+S Sbjct: 241 GVARAAIDEINQMSGGRVAITGAPKLADRSYVRIEVAKAEAKLRSARAFLYDATGEVWNS 300 Query: 301 ILAGNPVTPEQVSLLRLTAVEIAKVGNEVTQAMFGLAGTTAIYSNHPLQRYLRDAAVVKQ 360 ILAGNPVTPEQVSLLRLTAVEIAKVGNEVTQAMFGLAGTTAIYS+HPLQRYLRDAAVVKQ Sbjct: 301 ILAGNPVTPEQVSLLRLTAVEIAKVGNEVTQAMFGLAGTTAIYSHHPLQRYLRDAAVVKQ 360 Query: 361 HAFLGEGIYDGAGAVTLGVPPMPGFL 386 HAFLGEGIYDGAGAVTLGVPPMPGFL Sbjct: 361 HAFLGEGIYDGAGAVTLGVPPMPGFL 386 >ref|YP_001895786.1| acyl-CoA dehydrogenase type 2 domain [Burkholderia phytofirmans PsJN] gb|ACD16562.1| Acyl-CoA dehydrogenase type 2 domain [Burkholderia phytofirmans PsJN] Length = 392 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 260/392 (66%), Positives = 309/392 (78%), Gaps = 9/392 (2%) Query: 4 MENPAALAAREED----ALVPL---LAEIRARREEFAAQRFVPKDFIAQLKKAGVYRAAT 56 M + A +AA + + A +PL +AEI ARR+EF VP+D IA+LK+AGVYRAAT Sbjct: 1 MSDTATVAAEQSNTSNSARLPLDEVIAEIAARRDEFDRLSHVPRDVIAKLKRAGVYRAAT 60 Query: 57 PQCFGGSGLSPMGFLQMIERISVADASVGWVASFGSASVYLAALPRETQAKLYAKGPDLT 116 P+ FGG L+P FL MIERI+VAD S WVASFGSA+VYLAALP TQA++YA GPD Sbjct: 61 PRRFGGDALAPAQFLDMIERIAVADGSAAWVASFGSANVYLAALPLHTQAEIYADGPDQV 120 Query: 117 FAGGLFPLQPAEQVEGGWMVNGTWKFASGCKGADVLGVGIGAAVPGQAGS--KPRTAVLP 174 FAGGLFP+QPA+ EGGW VNGTWKFASGCKGAD LGVGIG P G+ KPRTAV Sbjct: 121 FAGGLFPVQPAQPAEGGWRVNGTWKFASGCKGADWLGVGIGVGAPTAPGTGGKPRTAVFR 180 Query: 175 PEQVEIIDNWDVMGLVGTGSHDLKVSQQFVPEEWTFIRGGVPTIDEPLYRYPTIAYAAQV 234 P QVEI++NWDV+G+ GTGSHDL+V+ QFV ++WTF+RGG P +DEPLYRYPTIAYAAQV Sbjct: 181 PHQVEIVENWDVVGMQGTGSHDLRVADQFVADDWTFVRGGEPCVDEPLYRYPTIAYAAQV 240 Query: 235 LAVVNLGVGRAAIDEINQMSGGRVAITGAPKLADRSYVRIEVAKAEAKLRSARAFLYDAT 294 LAVVNLG+ RAA+D N M+GGR TGAP+LADR+Y RIE+AKAEA+LRSARAF YD T Sbjct: 241 LAVVNLGLARAALDVANHMAGGRKTTTGAPQLADRAYYRIELAKAEAQLRSARAFFYDTT 300 Query: 295 GEVWHSILAGNPVTPEQVSLLRLTAVEIAKVGNEVTQAMFGLAGTTAIYSNHPLQRYLRD 354 +VW SILAGN VT +QVSLLRL+A +IA+ G +V Q + L GT AIY +HPLQR +RD Sbjct: 301 NQVWQSILAGNAVTADQVSLLRLSATQIAREGADVVQRAYRLGGTMAIYRSHPLQRLMRD 360 Query: 355 AAVVKQHAFLGEGIYDGAGAVTLGVPPMPGFL 386 + VV QHAFLGEG YDGAGAV +GVPP+PG+L Sbjct: 361 SMVVTQHAFLGEGNYDGAGAVFVGVPPIPGYL 392 >ref|YP_373255.1| Acyl-CoA dehydrogenase-like [Burkholderia sp. 383] gb|ABB12611.1| Acyl-CoA dehydrogenase-like protein [Burkholderia sp. 383] Length = 397 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 262/388 (67%), Positives = 300/388 (77%), Gaps = 10/388 (2%) Query: 7 PAALAAREEDA--LVPLLAEIR---ARREEFAAQRFVPKDFIAQLKKAGVYRAATPQCFG 61 P+A A E A L PL A I ARREEF VP+D IA K+AG+YRA TP+ FG Sbjct: 12 PSAPHAASEPAARLSPLDAVIETVAARREEFDRLSHVPRDVIALFKQAGIYRAGTPRRFG 71 Query: 62 GSGLSPMGFLQMIERISVADASVGWVASFGSASVYLAALPRETQAKLYAKGPDLTFAGGL 121 G L+P FL MIERI+ AD S WVASFGSA+VYLAALP ETQA+LYA GPD FAGGL Sbjct: 72 GDALAPTAFLDMIERIATADGSAAWVASFGSANVYLAALPLETQAELYASGPDQVFAGGL 131 Query: 122 FPLQPAEQVEGGWMVNGTWKFASGCKGADVLGVGIGAAVPGQ---AGSKPRTAVLPPEQV 178 FP+QPA+ GGW VNGTWKFASGCKGAD LGVGI AVPG A +KPRTAV +QV Sbjct: 132 FPVQPAQPAPGGWRVNGTWKFASGCKGADWLGVGI--AVPGAQDAAPNKPRTAVFRADQV 189 Query: 179 EIIDNWDVMGLVGTGSHDLKVSQQFVPEEWTFIRGGVPTIDEPLYRYPTIAYAAQVLAVV 238 EI++NW+V+G+ GTGSHDL+V +FVPE WTF+RGG PT+DEPLYRYPT+AYAAQVLAVV Sbjct: 190 EIVENWNVVGMQGTGSHDLRVDDRFVPEAWTFVRGGEPTVDEPLYRYPTVAYAAQVLAVV 249 Query: 239 NLGVGRAAIDEINQMSGGRVAITGAPKLADRSYVRIEVAKAEAKLRSARAFLYDATGEVW 298 NLG+ RAA+D +N+MSGGR TGAP+LADR+Y RIE+AKAEA+LRSARAF YDAT VW Sbjct: 250 NLGLARAALDVVNRMSGGRQTTTGAPRLADRAYYRIELAKAEAQLRSARAFFYDATDGVW 309 Query: 299 HSILAGNPVTPEQVSLLRLTAVEIAKVGNEVTQAMFGLAGTTAIYSNHPLQRYLRDAAVV 358 SILAGNPVTP+QVSLLRL A +IA+ G V + + L GT AIY HPLQR LRDA VV Sbjct: 310 QSILAGNPVTPDQVSLLRLAATQIAREGASVVERAYRLGGTAAIYRTHPLQRLLRDAMVV 369 Query: 359 KQHAFLGEGIYDGAGAVTLGVPPMPGFL 386 QHAFLGEG +DGAGAV GV P PG+L Sbjct: 370 TQHAFLGEGNFDGAGAVFTGVTPFPGYL 397 >ref|ZP_04942345.1| Acyl-CoA dehydrogenase [Burkholderia cenocepacia PC184] gb|EAY65516.1| Acyl-CoA dehydrogenase [Burkholderia cenocepacia PC184] Length = 427 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 255/384 (66%), Positives = 298/384 (77%), Gaps = 6/384 (1%) Query: 7 PAAL-AAREEDALVPLLAEIRARREEFAAQRFVPKDFIAQLKKAGVYRAATPQCFGGSGL 65 PAA AA + L ++ + ARREEF VP+D IA K+AG+YRA TP+ FGG L Sbjct: 46 PAARPAAGQLSPLDAVIETVAARREEFDRLSHVPRDVIALFKQAGIYRAGTPRRFGGDAL 105 Query: 66 SPMGFLQMIERISVADASVGWVASFGSASVYLAALPRETQAKLYAKGPDLTFAGGLFPLQ 125 +P FL MIERI+ AD S WVASFGSA+VYLAALP +TQA+LYA GPD FAGGLFP+Q Sbjct: 106 APTAFLDMIERIATADGSAAWVASFGSANVYLAALPLDTQAELYANGPDQVFAGGLFPVQ 165 Query: 126 PAEQVEGGWMVNGTWKFASGCKGADVLGVGIGAAVPGQ---AGSKPRTAVLPPEQVEIID 182 PA+ GGW VNGTWKFASGCKGAD LGVGI AVPG A +KPRTAV +VEI++ Sbjct: 166 PAQDAPGGWRVNGTWKFASGCKGADWLGVGI--AVPGAQDAAPNKPRTAVFRAAEVEIVE 223 Query: 183 NWDVMGLVGTGSHDLKVSQQFVPEEWTFIRGGVPTIDEPLYRYPTIAYAAQVLAVVNLGV 242 NW V+G+ GTGSHDL+V+ +FVPE WTF+RGG PT+DEPLYRYPT+AYAAQVLAVVNLG+ Sbjct: 224 NWSVVGMQGTGSHDLRVNDRFVPEAWTFVRGGEPTVDEPLYRYPTVAYAAQVLAVVNLGL 283 Query: 243 GRAAIDEINQMSGGRVAITGAPKLADRSYVRIEVAKAEAKLRSARAFLYDATGEVWHSIL 302 RAA+D +N+MSGGR TGAP+LADR+Y RIE+AKAEA+LRSARAF YDAT VW SIL Sbjct: 284 ARAALDVVNRMSGGRQTTTGAPRLADRAYFRIELAKAEAQLRSARAFFYDATDSVWQSIL 343 Query: 303 AGNPVTPEQVSLLRLTAVEIAKVGNEVTQAMFGLAGTTAIYSNHPLQRYLRDAAVVKQHA 362 AGNPVTP+QVSLLRL A +IA+ G V + + L GT AIY +HPLQR LRDA VV QHA Sbjct: 344 AGNPVTPDQVSLLRLAATQIAREGASVVERAYRLGGTAAIYRSHPLQRLLRDAMVVTQHA 403 Query: 363 FLGEGIYDGAGAVTLGVPPMPGFL 386 FL EG +DGAGAV GV P PG+L Sbjct: 404 FLAEGNFDGAGAVFTGVTPFPGYL 427 >ref|YP_837247.1| acyl-CoA dehydrogenase type 2 [Burkholderia cenocepacia HI2424] gb|ABK10354.1| Acyl-CoA dehydrogenase, type 2, C-terminal domain protein [Burkholderia cenocepacia HI2424] Length = 397 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 249/369 (67%), Positives = 290/369 (78%), Gaps = 5/369 (1%) Query: 21 LLAEIRARREEFAAQRFVPKDFIAQLKKAGVYRAATPQCFGGSGLSPMGFLQMIERISVA 80 ++ + ARREEF VP+D IA K+AG+YRA TP+ FGG L+P FL MIERI+ A Sbjct: 31 VIETVAARREEFDRLSHVPRDVIALFKQAGIYRAGTPRRFGGDALAPTAFLDMIERIATA 90 Query: 81 DASVGWVASFGSASVYLAALPRETQAKLYAKGPDLTFAGGLFPLQPAEQVEGGWMVNGTW 140 D S WVASFGSA+VYLAALP +TQA+LYA GPD FAGGLFP+QPA+ GGW VNGTW Sbjct: 91 DGSAAWVASFGSANVYLAALPLDTQAELYASGPDQVFAGGLFPVQPAQDAPGGWRVNGTW 150 Query: 141 KFASGCKGADVLGVGIGAAVPGQ---AGSKPRTAVLPPEQVEIIDNWDVMGLVGTGSHDL 197 KFASGCKGAD LGVGI AVPG A +KPRTAV VEI++NW V+G+ GTGSHDL Sbjct: 151 KFASGCKGADWLGVGI--AVPGAQDAAPNKPRTAVFRAADVEIVENWSVVGMQGTGSHDL 208 Query: 198 KVSQQFVPEEWTFIRGGVPTIDEPLYRYPTIAYAAQVLAVVNLGVGRAAIDEINQMSGGR 257 +V+ +FVPE WTF+RGG PT+DEPLYRYPT+AYAAQVLAVVNLG+ RAA+D +N+MSGGR Sbjct: 209 RVNDRFVPEAWTFVRGGEPTVDEPLYRYPTVAYAAQVLAVVNLGLARAALDVVNRMSGGR 268 Query: 258 VAITGAPKLADRSYVRIEVAKAEAKLRSARAFLYDATGEVWHSILAGNPVTPEQVSLLRL 317 TGAP+LADR+Y RIE+AKAEA+LRSARAF YDAT VW SILAGNPVTP+QVSLLRL Sbjct: 269 QTTTGAPRLADRAYFRIELAKAEAQLRSARAFFYDATDTVWQSILAGNPVTPDQVSLLRL 328 Query: 318 TAVEIAKVGNEVTQAMFGLAGTTAIYSNHPLQRYLRDAAVVKQHAFLGEGIYDGAGAVTL 377 A +IA+ G V + + L GT AIY +HPLQR LRDA VV QHAFL EG +DGAGAV Sbjct: 329 AATQIAREGASVVERAYRLGGTAAIYRSHPLQRLLRDAMVVTQHAFLAEGNFDGAGAVFT 388 Query: 378 GVPPMPGFL 386 GV P PG+L Sbjct: 389 GVTPFPGYL 397