BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1110.p (513 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774769.1| two component transmembrane sensor histidine... 908 0.0 ref|ZP_02369706.1| sensory box histidine kinase, putative [Burkh... 499 e-139 ref|ZP_02383638.1| sensory box histidine kinase, putative [Burkh... 498 e-139 ref|ZP_02360822.1| sensory box histidine kinase, putative [Burkh... 496 e-138 ref|ZP_02367975.1| sensory box histidine kinase, putative [Burkh... 496 e-138 >ref|YP_003774769.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ62861.1| two component transmembrane sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 508 Score = 908 bits (2346), Expect = 0.0, Method: Composition-based stats. Identities = 455/513 (88%), Positives = 475/513 (92%), Gaps = 5/513 (0%) Query: 1 MPEQTAAPVSPALPDDSIRFGLDDFRRMMEALPMCIILHDAQTKSILWANPSACQVLGFT 60 MPE TAAP DD IRFGLDDFRRMM+ALPMCIILHDAQTKSILWANPSACQVLGFT Sbjct: 1 MPEPTAAP-----EDDPIRFGLDDFRRMMDALPMCIILHDAQTKSILWANPSACQVLGFT 55 Query: 61 LEELLPLKAPDMSRQSHEYRREIGRKWLHDAVLHGSNMVEWCYRAKNGDEILSEAIATLV 120 LEELLPLKAPDMSRQSHEYRREIGRKWLHDA LHGSNMVEWCYRAKNG+EILSEAIATLV Sbjct: 56 LEELLPLKAPDMSRQSHEYRREIGRKWLHDATLHGSNMVEWCYRAKNGEEILSEAIATLV 115 Query: 121 PLTERDVIMVQFRDIAREEQIRREMKKLESRLKEFMQDSDEGVTVLRSDGGIEYLSDAGR 180 PLTERDVIMVQFR+IAREEQIRREMKKLESRLKEFMQDSDEGV VLR DGGIEYLSDAGR Sbjct: 116 PLTERDVIMVQFRNIAREEQIRREMKKLESRLKEFMQDSDEGVAVLRPDGGIEYLSDAGR 175 Query: 181 KLLGVRPGQNPPKNFVEQCLPESRDELLELLTLALPDAISFPLRYQIVRKDGLVRWHHAV 240 KLLGVRPGQNPPKNFVEQCLP+S++EL ELLTLALPDAISFPLRY+I RKDGLVRWHHAV Sbjct: 176 KLLGVRPGQNPPKNFVEQCLPDSQEELQELLTLALPDAISFPLRYRIARKDGLVRWHHAV 235 Query: 241 CRYIEIENDLKGHLLHFHDITDQVEAEEARRRDQASLEYLARHNAMGEMATAIAHELSQP 300 CRYIEIENDLKGHLLHFHDITDQVEAEEARRRDQA+LEYLARHNAMGEMATAIAHELSQP Sbjct: 236 CRYIEIENDLKGHLLHFHDITDQVEAEEARRRDQAALEYLARHNAMGEMATAIAHELSQP 295 Query: 301 LAAIRNFLEGSVLRIKQSEALREQAGQIVWGLESAGRQVDHAATIIKSVREYVVRLEQSE 360 LAAIRNFLEGSVLR+ SEALREQAGQI+WGLESAGRQVDHAA IIKSVREYVV+LEQSE Sbjct: 296 LAAIRNFLEGSVLRLNHSEALREQAGQIIWGLESAGRQVDHAAAIIKSVREYVVKLEQSE 355 Query: 361 GLIDLNAVLEEVRWFIEMKAAEGKVHLHIEPGTQPLVVSCEKVLIGQVILNLAFNAIEEM 420 GLIDLN VL EVRWFIEM+AAEG+V L ++ + LVVSCEKVLIGQVILNLAFNAIEEM Sbjct: 356 GLIDLNEVLAEVRWFIEMRAAEGRVQLEVQASEEALVVSCEKVLIGQVILNLAFNAIEEM 415 Query: 421 MDFPEGARHVRITTRRAGDHALLSVADEGRGIDAGHRERLFDGFFSSKVSGNGIGLALCK 480 FPE R V I+ R ALL+VADEGRGIDAGHRERLFDGFFSSKVSGNGIGLALCK Sbjct: 416 SHFPENQRRVCISLARKDQQALLTVADEGRGIDAGHRERLFDGFFSSKVSGNGIGLALCK 475 Query: 481 NIIARHRGDIWAQPGETRGTRFCFTLPLVERHN 513 NIIARHRGDIWAQP + RGTRFCFTLPLV+RHN Sbjct: 476 NIIARHRGDIWAQPAQVRGTRFCFTLPLVQRHN 508 >ref|ZP_02369706.1| sensory box histidine kinase, putative [Burkholderia thailandensis TXDOH] Length = 488 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 259/486 (53%), Positives = 335/486 (68%), Gaps = 5/486 (1%) Query: 23 DDFRRMMEALPMCIILHDAQTKSILWANPSACQVLGFTLEELLPLKAPDMSRQSHEYRRE 82 DDFRR+++AL +C++LHDAQTK+I+WAN +AC VLGFTLEELLPLKAPDM+R +Y RE Sbjct: 7 DDFRRLLDALSLCVLLHDAQTKAIVWANRAACDVLGFTLEELLPLKAPDMTRPGPKYPRE 66 Query: 83 IGRKWLHDAVLHGSNMVEWCYRAKNGDEILSEAIATLVPLTERDVIMVQFRDIAREEQIR 142 +G + ++ G + EWCYR++ G ++LSEA AT V L ERDV+MVQFRDI+ EE R Sbjct: 67 VGVGAMDRSMTDGPQVYEWCYRSRTGVDMLSEATATYVRLRERDVVMVQFRDISAEEATR 126 Query: 143 REMKKLESRLKEFMQDSDEGVTVLRSDGGIEYLSDAGRKLLGVRPGQNPPKNFVEQCLPE 202 + +++ E+RL+EFMQD DEGV VL GG++++S++GR++LG+ G+ P ++ C Sbjct: 127 QALRRYEARLREFMQDLDEGVAVLTPHGGVQFISESGRRVLGIAAGE-PLGGVLDYCTVA 185 Query: 203 SRDELLELLTLALPDAISFPLRYQIVRKDGLVRWHHAVCRYIEIENDLKGHLLHFHDITD 262 RD L+ L A S P RY+I R+DG RW CR ++IE DL G L+HF D+TD Sbjct: 186 DRDRLIAQLRDAPACRPSEPQRYRIARRDGASRWVRITCRRVDIEGDLSGLLIHFRDVTD 245 Query: 263 QVEAEEARRRDQASLEYLARHNAMGEMATAIAHELSQPLAAIRNFLEGSVLRIKQSEALR 322 +V EEARR + LEY R+NAMGEMA AIAHELSQPLAA+RNF+EG++ R+ Q A Sbjct: 246 EVALEEARRAEARMLEYAGRYNAMGEMAAAIAHELSQPLAAVRNFIEGAIRRLGQPGATD 305 Query: 323 EQAGQIVWGLESAGRQVDHAATIIKSVREYVVRLEQSEGLIDLNAVLEEVRWFIEMKAAE 382 + IVWGL SA RQ +HAA IIKSVREY+VR E E ++DL +L +V +FI+++A E Sbjct: 306 D----IVWGLRSADRQAEHAALIIKSVREYIVRRESVETVVDLRDILADVSYFIDLRAKE 361 Query: 383 GKVHLHIEPGTQPLVVSCEKVLIGQVILNLAFNAIEEMMDFPEGARHVRITTRRAGDHAL 442 V + I PL V CE+VLIGQVILNLAFNAIE + AR + + T HA+ Sbjct: 362 AGVAVTIMQADAPLPVRCERVLIGQVILNLAFNAIEALAGIERPARTLTLRTGGHAAHAV 421 Query: 443 LSVADEGRGIDAGHRERLFDGFFSSKVSGNGIGLALCKNIIARHRGDIWAQPGETRGTRF 502 L D G G+ G +LFDGF SSKV GNGIGL+LCKNI+ RH G I AQP G Sbjct: 422 LYAVDNGPGVPDGMHAQLFDGFSSSKVGGNGIGLSLCKNIVTRHGGQIRAQPAPGGGLEC 481 Query: 503 CFTLPL 508 FTLPL Sbjct: 482 RFTLPL 487 >ref|ZP_02383638.1| sensory box histidine kinase, putative [Burkholderia thailandensis Bt4] ref|ZP_05589841.1| sensory box histidine kinase, putative [Burkholderia thailandensis E264] Length = 488 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 259/486 (53%), Positives = 335/486 (68%), Gaps = 5/486 (1%) Query: 23 DDFRRMMEALPMCIILHDAQTKSILWANPSACQVLGFTLEELLPLKAPDMSRQSHEYRRE 82 DDFRR+++AL +C++LHDAQTK+I+WAN +AC VLGFTLEELLPLKAPDM+R +Y RE Sbjct: 7 DDFRRLLDALSLCVLLHDAQTKAIVWANRAACDVLGFTLEELLPLKAPDMTRPGPKYPRE 66 Query: 83 IGRKWLHDAVLHGSNMVEWCYRAKNGDEILSEAIATLVPLTERDVIMVQFRDIAREEQIR 142 +G + ++ G + EWCYR++ G ++LSEA AT V L ERDV+MVQFRDI+ EE R Sbjct: 67 VGVGAMDRSMTDGPQVYEWCYRSRTGVDMLSEATATYVRLRERDVVMVQFRDISAEEATR 126 Query: 143 REMKKLESRLKEFMQDSDEGVTVLRSDGGIEYLSDAGRKLLGVRPGQNPPKNFVEQCLPE 202 + +++ E+RL+EFMQD DEGV VL GG++++S++GR++LG+ G+ P ++ C Sbjct: 127 QALRRYEARLREFMQDLDEGVAVLTPHGGVQFISESGRRVLGIAVGE-PLGGVLDYCTVA 185 Query: 203 SRDELLELLTLALPDAISFPLRYQIVRKDGLVRWHHAVCRYIEIENDLKGHLLHFHDITD 262 RD L+ L A S P RY+I R+DG RW CR ++IE DL G L+HF D+TD Sbjct: 186 DRDRLIAQLRDAPACRPSEPQRYRIARRDGASRWVRITCRRVDIEGDLSGLLIHFRDVTD 245 Query: 263 QVEAEEARRRDQASLEYLARHNAMGEMATAIAHELSQPLAAIRNFLEGSVLRIKQSEALR 322 +V EEARR + LEY R+NAMGEMA AIAHELSQPLAA+RNF+EG++ R+ Q A Sbjct: 246 EVALEEARRAEARMLEYAGRYNAMGEMAAAIAHELSQPLAAVRNFIEGAIRRLGQPGATD 305 Query: 323 EQAGQIVWGLESAGRQVDHAATIIKSVREYVVRLEQSEGLIDLNAVLEEVRWFIEMKAAE 382 + IVWGL SA RQ +HAA IIKSVREY+VR E E ++DL +L +V +FI+++A E Sbjct: 306 D----IVWGLRSADRQAEHAALIIKSVREYIVRRESVETVVDLRDILADVSYFIDLRAKE 361 Query: 383 GKVHLHIEPGTQPLVVSCEKVLIGQVILNLAFNAIEEMMDFPEGARHVRITTRRAGDHAL 442 V + I PL V CE+VLIGQVILNLAFNAIE + AR + + T HA+ Sbjct: 362 AGVAVTIMQADAPLPVRCERVLIGQVILNLAFNAIEALAGIERPARTLTLRTGGHAAHAV 421 Query: 443 LSVADEGRGIDAGHRERLFDGFFSSKVSGNGIGLALCKNIIARHRGDIWAQPGETRGTRF 502 L D G G+ G +LFDGF SSKV GNGIGL+LCKNI+ RH G I AQP G Sbjct: 422 LYAVDNGPGVPDGMHAQLFDGFSSSKVGGNGIGLSLCKNIVTRHGGQIRAQPAAGGGLEC 481 Query: 503 CFTLPL 508 FTLPL Sbjct: 482 RFTLPL 487 >ref|ZP_02360822.1| sensory box histidine kinase, putative [Burkholderia oklahomensis EO147] Length = 488 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 255/486 (52%), Positives = 335/486 (68%), Gaps = 5/486 (1%) Query: 23 DDFRRMMEALPMCIILHDAQTKSILWANPSACQVLGFTLEELLPLKAPDMSRQSHEYRRE 82 DDFRR+++AL +C++LHDA+TK+I+WAN +AC VLGFT+ ELLPLKAPDM+R +Y+RE Sbjct: 7 DDFRRLLDALSLCVLLHDAKTKAIVWANRAACDVLGFTVAELLPLKAPDMTRPGPKYQRE 66 Query: 83 IGRKWLHDAVLHGSNMVEWCYRAKNGDEILSEAIATLVPLTERDVIMVQFRDIAREEQIR 142 IG + ++ G + EWCYR++ G ++LSEA AT V L ERDV+MVQFRDI+ EE R Sbjct: 67 IGVGAMDRSITDGPQVYEWCYRSRTGVDMLSEATATHVRLRERDVVMVQFRDISAEEATR 126 Query: 143 REMKKLESRLKEFMQDSDEGVTVLRSDGGIEYLSDAGRKLLGVRPGQNPPKNFVEQCLPE 202 + +++ E+RL+EFMQD DEGV VL GG++++S++GR++LG+ G+ P + ++ C Sbjct: 127 QALRRYEARLREFMQDLDEGVAVLTPHGGVQFISESGRRVLGIAAGE-PLGDVLDYCTVA 185 Query: 203 SRDELLELLTLALPDAISFPLRYQIVRKDGLVRWHHAVCRYIEIENDLKGHLLHFHDITD 262 RD L+ L A S P RY+I R+DG RW CR ++IE DL G L+HF D+TD Sbjct: 186 DRDRLIAQLRDAPACRPSEPQRYRIARRDGTPRWVRITCRRVDIEGDLSGLLIHFRDVTD 245 Query: 263 QVEAEEARRRDQASLEYLARHNAMGEMATAIAHELSQPLAAIRNFLEGSVLRIKQSEALR 322 +V EE RR + LEY R+NAMGEMA IAHELSQPLAA+RNF+EG++ R+ Q + Sbjct: 246 EVAIEETRRIEARMLEYAGRYNAMGEMAAVIAHELSQPLAAVRNFIEGAIQRLGQPGSTD 305 Query: 323 EQAGQIVWGLESAGRQVDHAATIIKSVREYVVRLEQSEGLIDLNAVLEEVRWFIEMKAAE 382 + +VWGL A RQ +HAA IIKSVREYVVR E E ++DL +L +V +FI+++A E Sbjct: 306 D----VVWGLRGADRQAEHAAHIIKSVREYVVRRESVESVVDLRDILADVSYFIDLRAKE 361 Query: 383 GKVHLHIEPGTQPLVVSCEKVLIGQVILNLAFNAIEEMMDFPEGARHVRITTRRAGDHAL 442 V + I PL V CE+VLIGQVILNLAFNAIE + D AR + + A+ Sbjct: 362 AGVAVAIVQADAPLPVRCERVLIGQVILNLAFNAIEALTDVDPPARALMLGVGEHAGRAV 421 Query: 443 LSVADEGRGIDAGHRERLFDGFFSSKVSGNGIGLALCKNIIARHRGDIWAQPGETRGTRF 502 L V D G G+ G RLFDGF SSKVSGNGIGL+LCKNI+ RH G IWAQP G Sbjct: 422 LRVVDNGPGVPDGVHARLFDGFSSSKVSGNGIGLSLCKNIVTRHGGRIWAQPAPGGGLEC 481 Query: 503 CFTLPL 508 F+LPL Sbjct: 482 RFSLPL 487 >ref|ZP_02367975.1| sensory box histidine kinase, putative [Burkholderia oklahomensis C6786] Length = 488 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 255/486 (52%), Positives = 335/486 (68%), Gaps = 5/486 (1%) Query: 23 DDFRRMMEALPMCIILHDAQTKSILWANPSACQVLGFTLEELLPLKAPDMSRQSHEYRRE 82 DDFRR+++AL +C++LHDA+TK+I+WAN +AC VLGFT+ ELLPLKAPDM+R +Y+RE Sbjct: 7 DDFRRLLDALSLCVLLHDAKTKAIVWANRAACDVLGFTVAELLPLKAPDMTRPGPKYQRE 66 Query: 83 IGRKWLHDAVLHGSNMVEWCYRAKNGDEILSEAIATLVPLTERDVIMVQFRDIAREEQIR 142 IG + ++ G + EWCYR++ G ++LSEA AT V L ERDV+MVQFRDI+ EE R Sbjct: 67 IGVGAMDRSITDGPQVYEWCYRSRTGVDMLSEATATHVRLRERDVVMVQFRDISAEEATR 126 Query: 143 REMKKLESRLKEFMQDSDEGVTVLRSDGGIEYLSDAGRKLLGVRPGQNPPKNFVEQCLPE 202 + +++ E+RL+EFMQD DEGV VL GG++++S++GR++LG+ G+ P + ++ C Sbjct: 127 QALRRYEARLREFMQDLDEGVAVLTPHGGVQFISESGRRVLGIAAGE-PLGDVLDYCTVA 185 Query: 203 SRDELLELLTLALPDAISFPLRYQIVRKDGLVRWHHAVCRYIEIENDLKGHLLHFHDITD 262 RD L+ L A S P RY+I R+DG RW CR ++IE DL G L+HF D+TD Sbjct: 186 DRDRLIAQLRDAPACRPSEPQRYRIARRDGTPRWVRITCRRVDIEGDLSGLLIHFRDVTD 245 Query: 263 QVEAEEARRRDQASLEYLARHNAMGEMATAIAHELSQPLAAIRNFLEGSVLRIKQSEALR 322 +V EE RR + LEY R+NAMGEMA IAHELSQPLAA+RNF+EG++ R+ Q + Sbjct: 246 EVAIEETRRIEARMLEYAGRYNAMGEMAAVIAHELSQPLAAVRNFIEGAIQRLGQPGSTD 305 Query: 323 EQAGQIVWGLESAGRQVDHAATIIKSVREYVVRLEQSEGLIDLNAVLEEVRWFIEMKAAE 382 + +VWGL A RQ +HAA IIKSVREYVVR E E ++DL +L +V +FI+++A E Sbjct: 306 D----VVWGLRGADRQAEHAALIIKSVREYVVRRESVEAVVDLRDILADVSYFIDLRAKE 361 Query: 383 GKVHLHIEPGTQPLVVSCEKVLIGQVILNLAFNAIEEMMDFPEGARHVRITTRRAGDHAL 442 V + I PL V CE+VLIGQVILNLAFNAIE + D AR + + A+ Sbjct: 362 AGVAVAIVQADAPLPVRCERVLIGQVILNLAFNAIEALTDVVPPARALMLGIGEHAGRAV 421 Query: 443 LSVADEGRGIDAGHRERLFDGFFSSKVSGNGIGLALCKNIIARHRGDIWAQPGETRGTRF 502 L V D G G+ G RLFDGF SSKVSGNGIGL+LCKNI+ RH G IWAQP G Sbjct: 422 LHVVDNGPGVPDGVHARLFDGFSSSKVSGNGIGLSLCKNIVTRHGGRIWAQPAPGGGLEC 481 Query: 503 CFTLPL 508 F+LPL Sbjct: 482 RFSLPL 487