BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1109.p (394 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774768.1| outer membrane protein (porin) signal peptid... 549 e-154 ref|XP_002538927.1| conserved hypothetical protein [Ricinus comm... 324 1e-86 emb|CCA88772.1| putative Outer membrane porin OpcP [Ralstonia sy... 246 4e-63 ref|YP_001114786.1| porin [Burkholderia vietnamiensis G4] >gi|13... 207 3e-51 ref|ZP_04944135.1| Porin [Burkholderia cenocepacia PC184] >gi|12... 206 7e-51 >ref|YP_003774768.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ62860.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 352 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 323/352 (91%), Positives = 338/352 (96%) Query: 43 MKKKLLAAALLAAGTGMAHAQSSVSIYGLIDLGLTYYSNAAKTGGGGASLLRMDSGIAQG 102 MKK LL AA+LA G AHAQSSVSIYGLIDLGLTYYS+A K+GGGGA LLRMDSGIAQG Sbjct: 1 MKKTLLVAAMLAGGATTAHAQSSVSIYGLIDLGLTYYSSAPKSGGGGARLLRMDSGIAQG 60 Query: 103 SRIGFKGTEDLGGGLNAFFTLETGFGADDGSLGQGGLLFGRQSFVGLGSKDWGALSVGRQ 162 SRIGFKGTEDLGGG+NAFFTLETGFGADDGSLGQGGLLFGRQSFVGLGS WG+LSVGRQ Sbjct: 61 SRIGFKGTEDLGGGMNAFFTLETGFGADDGSLGQGGLLFGRQSFVGLGSTQWGSLSVGRQ 120 Query: 163 YDFMANIGGQYAMGALSPAGSFGWGLHADAAHGTALNNHIYAGDRTNNSIKYNSAKFGGF 222 YDFMANIGGQYAMGALSPAGSFGWGLHADAAHGTALNNHIYAGDRTNNSIKYNSAKFGGF Sbjct: 121 YDFMANIGGQYAMGALSPAGSFGWGLHADAAHGTALNNHIYAGDRTNNSIKYNSAKFGGF 180 Query: 223 SFGAMLGLGEVAGNNNAGRTVSATGQYDSGAFSGALAYTDIKSSSGASATRIYGGGARYQ 282 SFGAM+GLGE AGNNNAGRTVSATGQYD+G FSGALAYTDIK S+G+ +TRIYGGGARYQ Sbjct: 181 SFGAMVGLGETAGNNNAGRTVSATGQYDNGPFSGALAYTDIKDSTGSFSTRIYGGGARYQ 240 Query: 283 IGAFTPFGVITQVKNTDTNAKATTYELGTVYALTPLWDLAAAYQFQKRNQGVGNAQALVA 342 IGAFTPFGV+TQVKNT+T+AKATTYELGTVYALTPLWDLAAAYQFQKRNQGVGNAQALVA Sbjct: 241 IGAFTPFGVVTQVKNTNTSAKATTYELGTVYALTPLWDLAAAYQFQKRNQGVGNAQALVA 300 Query: 343 TVDYKISKRTDLYVGAVYDRDKGYNAYPVFGGGIQSSTGNQSALRLGMRHRF 394 TVDYKISKRTDLYVGAVYDRDKGYNAYPVFGGGIQS+TGNQ+ALRLGMRHRF Sbjct: 301 TVDYKISKRTDLYVGAVYDRDKGYNAYPVFGGGIQSATGNQTALRLGMRHRF 352 >ref|XP_002538927.1| conserved hypothetical protein [Ricinus communis] gb|EEF23456.1| conserved hypothetical protein [Ricinus communis] Length = 196 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 185/196 (94%), Positives = 192/196 (97%) Query: 175 MGALSPAGSFGWGLHADAAHGTALNNHIYAGDRTNNSIKYNSAKFGGFSFGAMLGLGEVA 234 MGALSPAGSFGWGLHADAAHGTALNNHIYAGDRTNNSIKYNSAKFGGFSFGAM+GLGE A Sbjct: 1 MGALSPAGSFGWGLHADAAHGTALNNHIYAGDRTNNSIKYNSAKFGGFSFGAMVGLGETA 60 Query: 235 GNNNAGRTVSATGQYDSGAFSGALAYTDIKSSSGASATRIYGGGARYQIGAFTPFGVITQ 294 GNNNAGRTVSATGQYD+G FSGALAYTDIK S+G+ +TRIYGGGARYQIGAFTPFGVITQ Sbjct: 61 GNNNAGRTVSATGQYDNGPFSGALAYTDIKDSTGSFSTRIYGGGARYQIGAFTPFGVITQ 120 Query: 295 VKNTDTNAKATTYELGTVYALTPLWDLAAAYQFQKRNQGVGNAQALVATVDYKISKRTDL 354 VKNT+T+AKATTYELGTVYALTPLWDLAAAYQFQKRNQGVGNAQALVATVDYKISKRTDL Sbjct: 121 VKNTNTSAKATTYELGTVYALTPLWDLAAAYQFQKRNQGVGNAQALVATVDYKISKRTDL 180 Query: 355 YVGAVYDRDKGYNAYP 370 YVGAVYDRDKGYNAYP Sbjct: 181 YVGAVYDRDKGYNAYP 196 >emb|CCA88772.1| putative Outer membrane porin OpcP [Ralstonia syzygii R24] Length = 351 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 157/353 (44%), Positives = 217/353 (61%), Gaps = 4/353 (1%) Query: 43 MKKKLLAAALLAAGTGMAHAQSSVSIYGLIDLGLTYYSNAAKTGGGGASLLRMDSGIAQG 102 + KK +A A+ G A AQSSV++YGL+D G+TY +N G G + M SG +QG Sbjct: 2 VSKKKIAVAIAMTWCGAAAAQSSVTLYGLVDAGVTYTNNGTSNGKSGPTFQFM-SGSSQG 60 Query: 103 SRIGFKGTEDLGGGLNAFFTLETGFGADDGSLGQGGLLFGRQSFVGLGSKDWGALSVGRQ 162 R G KGTEDLGGG A F LE+G+ +G GQGG +FGR +FVGL S +WG L++GRQ Sbjct: 61 DRWGLKGTEDLGGGTKALFNLESGYQLSNGQAGQGGKMFGRSAFVGL-SGNWGELTLGRQ 119 Query: 163 YDFMANIGGQYAMGALSPAGSFGWGLHADAAHGTALNNHIYAGDRTNNSIKYNSAKFGGF 222 YDF+ YA+GA +PAG W L A AA G +L+N ++ GD +N++KY S F GF Sbjct: 120 YDFIGWYLPAYAIGANTPAGLLAWSLPAYAAGGYSLDNRVW-GDWVDNAVKYVSPTFAGF 178 Query: 223 SFGAMLGLGEVAGNNNAGRTVSATGQYDSGAFSGALAYTDIKSSSGASATRIYGGGARYQ 282 SFGAM G GE G+ T++ Y++G FS + +Y + + G+ IY GGA Y Sbjct: 179 SFGAMYGFGETPGSVAKNSTMNFVVNYENGPFSTSASYYSQRDAVGSGRQTIYIGGAAYN 238 Query: 283 IGAFTPFGVITQVK-NTDTNAKATTYELGTVYALTPLWDLAAAYQFQKRNQGVGNAQALV 341 IG F +++ V+ + T+ +ATT E+G Y LTP + YQ+Q+RN +G+A Sbjct: 239 IGKARIFALVSDVRIHGGTDPRATTAEVGATYGLTPNLTVGGGYQYQRRNNDLGSASQFT 298 Query: 342 ATVDYKISKRTDLYVGAVYDRDKGYNAYPVFGGGIQSSTGNQSALRLGMRHRF 394 A++DY +SKRTD+Y A Y D + A V G S+T +Q ALR+GMRH+F Sbjct: 299 ASLDYALSKRTDVYTVAAYGHDNAFGAQAVAALGYPSTTSSQFALRIGMRHKF 351 >ref|YP_001114786.1| porin [Burkholderia vietnamiensis G4] gb|ABO58531.1| porin, Gram-negative type [Burkholderia vietnamiensis G4] Length = 351 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 144/354 (40%), Positives = 198/354 (55%), Gaps = 5/354 (1%) Query: 43 MKKKLLAAALLAAGTGM-AHAQSSVSIYGLIDLGLTYYSNAAKTGGGGASLLRMDSGIAQ 101 MK + A+ G+ + A AQSSV++YG +D G+TY SN A GG L + +G+A+ Sbjct: 1 MKTWIRVLAIYGCGSAVPAFAQSSVTLYGSLDTGVTYTSNVASAPRGGRQL-ALQAGVAR 59 Query: 102 GSRIGFKGTEDLGGGLNAFFTLETGFGADDGSLGQGGLLFGRQSFVGLGSKDWGALSVGR 161 G G EDLGG A F LE+ F DG+L G F Q++VGLG DWG +++GR Sbjct: 60 NDVWGLTGREDLGGASFAVFRLESQFQTSDGTLTVPGAAFSSQAYVGLGG-DWGTVTLGR 118 Query: 162 QYDFMANIGGQYAMGALSPAGSFGWGLHADAAHGTALNNHIYAGDRTNNSIKYNSAKFGG 221 Q+DF+ ++ +A+GA +PAG WGL A+A+ G AL+N ++ G + NN++KY S FGG Sbjct: 119 QFDFVGDLMPAFAIGANTPAGLLAWGLPANASAGGALDNRVW-GVQVNNAVKYVSPTFGG 177 Query: 222 FSFGAMLGLGEVAGNNNAGRTVSATGQYDSGAFSGALAYTDIKSSSGASATRIYGGGARY 281 SFG M G G V G SA Y GAFS AL Y + R + GGA Y Sbjct: 178 VSFGGMWGFGNVPGTVARSSVQSAMVSYTHGAFSAALVYFGQHDVTSGGNLRNFSGGAGY 237 Query: 282 QIGAFTPFGVITQVK-NTDTNAKATTYELGTVYALTPLWDLAAAYQFQKRNQGVGNAQAL 340 +G FG+++ V+ + +ATTY+ G YA+TP L +QFQ+R G+A L Sbjct: 238 DVGRLRVFGMVSDVRISAAAPLRATTYDAGLTYAVTPSLQLGGGFQFQQRGGDTGSANQL 297 Query: 341 VATVDYKISKRTDLYVGAVYDRDKGYNAYPVFGGGIQSSTGNQSALRLGMRHRF 394 T DY +SKRT LY D Y A G +S QSA+R+G+RH+F Sbjct: 298 TLTADYSLSKRTGLYAVFARGHDSAYGAQVEAALGGAASGSTQSAVRVGLRHQF 351 >ref|ZP_04944135.1| Porin [Burkholderia cenocepacia PC184] gb|EAY67306.1| Porin [Burkholderia cenocepacia PC184] Length = 379 Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats. Identities = 138/348 (39%), Positives = 197/348 (56%), Gaps = 4/348 (1%) Query: 48 LAAALLAAGTGMAHAQSSVSIYGLIDLGLTYYSNAAKTGGGGASLLRMDSGIAQGSRIGF 107 +AA + A AQSSV++YG +D G+TY S+ A GG L + +G+++ G Sbjct: 35 MAAWCGCSAVAPAFAQSSVTLYGSLDTGVTYTSDVASAPRGGRQL-ALQAGVSRNDVWGL 93 Query: 108 KGTEDLGGGLNAFFTLETGFGADDGSLGQGGLLFGRQSFVGLGSKDWGALSVGRQYDFMA 167 G EDLGG A F LE+ F DG+L G F Q++VGLG DWG +++GRQ+DF+ Sbjct: 94 TGREDLGGANFAVFRLESQFQTSDGALTVPGSAFSSQAYVGLGG-DWGTVTLGRQFDFVG 152 Query: 168 NIGGQYAMGALSPAGSFGWGLHADAAHGTALNNHIYAGDRTNNSIKYNSAKFGGFSFGAM 227 ++ +A+GA +PAG WGL A+A+ G AL+N ++ G + NN++KY S FGG +FG M Sbjct: 153 DLLPAFAIGANTPAGLLAWGLPANASAGGALDNRVW-GVQVNNAVKYVSPTFGGVAFGGM 211 Query: 228 LGLGEVAGNNNAGRTVSATGQYDSGAFSGALAYTDIKSSSGASATRIYGGGARYQIGAFT 287 G G V G SA Y GAFS ALAY + R + GGA Y +G F Sbjct: 212 WGFGNVPGTVARSSVQSAMLSYTQGAFSAALAYFGQHDVTAGGNLRNFSGGAGYNVGPFR 271 Query: 288 PFGVITQVK-NTDTNAKATTYELGTVYALTPLWDLAAAYQFQKRNQGVGNAQALVATVDY 346 FG+++ V+ + +ATTY+ G YA+TP L +Q+Q+R +G+A + + DY Sbjct: 272 VFGMVSDVRISAAAPLRATTYDAGLTYAVTPSLQLGGGFQYQQRGGDIGSANQVTLSADY 331 Query: 347 KISKRTDLYVGAVYDRDKGYNAYPVFGGGIQSSTGNQSALRLGMRHRF 394 +SKRT LY D Y A G +S Q+A+RLG+RH+F Sbjct: 332 SLSKRTGLYAVFARGHDSAYGAQVEAALGGAASGSTQTAVRLGLRHQF 379