BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1108.p         (309 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774767.1| LysR family transcription regulator protein ...   539   e-151
ref|YP_001895780.1| LysR family transcriptional regulator [Burkh...   332   3e-89
ref|YP_558914.1| LysR family transcriptional regulator [Burkhold...   330   1e-88
ref|ZP_06842102.1| transcriptional regulator, LysR family [Burkh...   328   9e-88
ref|YP_438529.1| LysR family transcriptional regulator [Burkhold...   321   8e-86

>ref|YP_003774767.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62859.1| LysR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 309

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 276/309 (89%), Positives = 293/309 (94%)

Query: 1   MATFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEG 60
           MATFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEG
Sbjct: 1   MATFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEG 60

Query: 61  MQPTPAALELSKPINRALQAVQDALRYTERFDPAASTRVFRASMTDVAEMMFLPQLCELL 120
           MQPTPAALEL+KPINRALQAVQDALRYTERFDPA STRVFRASMTDVAEMMFLP LCE+L
Sbjct: 61  MQPTPAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEIL 120

Query: 121 TAQAPQTRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKAVTCHELLFRETYVCMMRKRP 180
           TAQAP  RLQVEQVPPAHLEEALRTGQLDFAFGNLPALK VTCHELLFRETYVC+MR+R 
Sbjct: 121 TAQAPDVRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKPVTCHELLFRETYVCLMRQRD 180

Query: 181 ALPAREQLQLDEFLALSHVLVESAESSHHQVENSFRNLGVQRKISLSIPHFTVLPRILGK 240
            LP R QL+LDEFLA+SHVLVESAESSHHQVENSF+ LGVQR+ISLSIPHFTVLPRILGK
Sbjct: 181 GLPQRAQLELDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGK 240

Query: 241 SDLVATVPARIAKLFHSEHPDVFLSYELPVELPAVDITLHWHPAFDADAGNTWLRQIVID 300
           SDLVATVPARIA+LFHSEHP VF+SY+LPV +P V++TLHWH +FD DAGN+WLRQIVID
Sbjct: 241 SDLVATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIVID 300

Query: 301 MLQSYGRSS 309
           +LQ YGRSS
Sbjct: 301 LLQQYGRSS 309


>ref|YP_001895780.1| LysR family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gb|ACD16556.1| transcriptional regulator, LysR family [Burkholderia phytofirmans
           PsJN]
          Length = 316

 Score =  332 bits (852), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 169/305 (55%), Positives = 218/305 (71%), Gaps = 2/305 (0%)

Query: 1   MATFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEG 60
           M + +++DLNLLRVFQAI +ERSLT AG RL LSQPA+SY+LGRLR +FDDPLFIRT+ G
Sbjct: 12  MNSLDHVDLNLLRVFQAIVEERSLTRAGERLALSQPAISYSLGRLRTLFDDPLFIRTRAG 71

Query: 61  MQPTPAALELSKPINRALQAVQDALRYTERFDPAASTRVFRASMTDVAEMMFLPQLCELL 120
           MQPTP ALELS  ++RAL  V++ALRY E FDPA STR FR S++D  E+ +LP +CE L
Sbjct: 72  MQPTPIALELSTIVSRALDTVREALRYAEHFDPAVSTRTFRLSLSDAGELAYLPPICEAL 131

Query: 121 TAQAPQTRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKAVTCHELLFRETYVCMMRKRP 180
             QAP+ RL++E +P   +E+ALR  +LDFA GNLP L A T H+ LF ETYVCM RKR 
Sbjct: 132 HRQAPRVRLRIEPLPVEEMEDALRASRLDFAIGNLPTLTARTRHQALFEETYVCMTRKRR 191

Query: 181 ALPAREQLQLDEFLALSHVLVESAESSHHQVENSFRNLGVQRKISLSIPHFTVLPRILGK 240
            LP  ++L L  FL  SHV + S E SHH +++ FR  GV R I+L +PHF  LP +L  
Sbjct: 192 GLPRTKELSLKAFLDASHVQITSVEHSHHALDDEFRAQGVGRHIALELPHFVALPSVLAV 251

Query: 241 SDLVATVPARIAKLFHSEHPDVFLSYELPVELPAVDITLHWHPAFDADAGNTWLRQIVID 300
           +DL AT+P R+A +F+ +    F  YELPV LP   +T+HWH  FD D GN WLR ++ D
Sbjct: 252 TDLFATLPRRLAHIFNRDGG--FQIYELPVTLPIAAVTMHWHEHFDQDEGNVWLRNLMAD 309

Query: 301 MLQSY 305
           +++ +
Sbjct: 310 IVRRF 314


>ref|YP_558914.1| LysR family transcriptional regulator [Burkholderia xenovorans
           LB400]
 gb|ABE30862.1| transcriptional regulator, LysR family [Burkholderia xenovorans
           LB400]
          Length = 317

 Score =  330 bits (847), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 168/305 (55%), Positives = 215/305 (70%), Gaps = 2/305 (0%)

Query: 1   MATFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEG 60
           M + + +DLNLLRVFQAI +ERSLT AG RL LSQPA+SY+LGRLR +FDDPLFIRT+ G
Sbjct: 12  MNSLDQVDLNLLRVFQAIVEERSLTRAGERLALSQPAISYSLGRLRTLFDDPLFIRTRAG 71

Query: 61  MQPTPAALELSKPINRALQAVQDALRYTERFDPAASTRVFRASMTDVAEMMFLPQLCELL 120
           MQPTP ALELS  + RAL  V++ALRY E FDPA STR FR S++D  E+ +LP +CE L
Sbjct: 72  MQPTPIALELSAIVARALDTVREALRYAEHFDPAVSTRTFRVSLSDAGELAYLPPICEAL 131

Query: 121 TAQAPQTRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKAVTCHELLFRETYVCMMRKRP 180
             QAP+ RL++E +P   +E+ALR  +LDFA GNLP L A T H+ LF ETYVCM RKR 
Sbjct: 132 HQQAPRVRLRIEPLPVEEIEDALRASRLDFAIGNLPTLTARTRHQALFEETYVCMTRKRR 191

Query: 181 ALPAREQLQLDEFLALSHVLVESAESSHHQVENSFRNLGVQRKISLSIPHFTVLPRILGK 240
            LP  ++L L  FL  SHV + S E SH  +++ FR  GV R I+L +PHF  LP +L  
Sbjct: 192 GLPRAKELSLKAFLDASHVQITSVEHSHRALDDEFRTQGVGRHIALELPHFVALPSVLAV 251

Query: 241 SDLVATVPARIAKLFHSEHPDVFLSYELPVELPAVDITLHWHPAFDADAGNTWLRQIVID 300
           +DL AT+P R+A++F+      F  YELPV LP   +T+HWH  FD D GN WLR ++ D
Sbjct: 252 TDLFATLPRRLAQIFN--RGGNFQIYELPVTLPIAAVTMHWHEHFDQDEGNVWLRNLMAD 309

Query: 301 MLQSY 305
           +++ +
Sbjct: 310 IVRHF 314


>ref|ZP_06842102.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
 gb|EFG70327.1| transcriptional regulator, LysR family [Burkholderia sp. Ch1-1]
          Length = 306

 Score =  328 bits (840), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 168/305 (55%), Positives = 215/305 (70%), Gaps = 2/305 (0%)

Query: 1   MATFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEG 60
           M + + +DLNLLRVFQAI +ERSLT AG RL LSQPA+SY+LGRLR +FDDPLFIRT+ G
Sbjct: 1   MNSLDQVDLNLLRVFQAIVEERSLTRAGERLALSQPAISYSLGRLRTLFDDPLFIRTRAG 60

Query: 61  MQPTPAALELSKPINRALQAVQDALRYTERFDPAASTRVFRASMTDVAEMMFLPQLCELL 120
           MQPTP ALELS  + RAL  V++ALRY E FDPA STR FR S++D  E+ +LP +CE L
Sbjct: 61  MQPTPIALELSAIVARALDTVREALRYAEHFDPAVSTRTFRVSLSDAGELAYLPPICEAL 120

Query: 121 TAQAPQTRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKAVTCHELLFRETYVCMMRKRP 180
             QAP+ RL++E +P   +E+ALR  +LDFA GNLP L A T H+ LF ETYVCM RKR 
Sbjct: 121 HQQAPRVRLRIEPLPVEEIEDALRASRLDFAIGNLPTLTARTRHQALFEETYVCMTRKRR 180

Query: 181 ALPAREQLQLDEFLALSHVLVESAESSHHQVENSFRNLGVQRKISLSIPHFTVLPRILGK 240
            LP  ++L L  FL  SHV + S E SH  +++ FR  GV R I+L +PHF  LP +L  
Sbjct: 181 GLPRTKELSLKAFLDASHVQITSVEHSHRALDDEFRAQGVGRHIALELPHFVALPSVLAV 240

Query: 241 SDLVATVPARIAKLFHSEHPDVFLSYELPVELPAVDITLHWHPAFDADAGNTWLRQIVID 300
           +DL AT+P R+A++F+      F  YELPV LP   +T+HWH  FD D GN WLR ++ D
Sbjct: 241 TDLFATLPRRLAQIFN--RGGNFQIYELPVTLPIAAVTMHWHEHFDQDEGNVWLRNLMAD 298

Query: 301 MLQSY 305
           +++ +
Sbjct: 299 IVRRF 303


>ref|YP_438529.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 ref|ZP_02383642.1| transcriptional regulator, LysR family protein [Burkholderia
           thailandensis Bt4]
 ref|ZP_05589845.1| LysR family transcriptional regulator [Burkholderia thailandensis
           E264]
 gb|ABC34201.1| transcriptional regulator, LysR family [Burkholderia thailandensis
           E264]
          Length = 306

 Score =  321 bits (823), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 165/305 (54%), Positives = 215/305 (70%), Gaps = 2/305 (0%)

Query: 1   MATFNNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEG 60
           M + +++DLNLLRVFQAI +ERSLT AG RL LSQPAVSY+LGRLR +FDDPLFIRT+ G
Sbjct: 1   MTSIDHLDLNLLRVFQAIVEERSLTKAGERLALSQPAVSYSLGRLRTLFDDPLFIRTRAG 60

Query: 61  MQPTPAALELSKPINRALQAVQDALRYTERFDPAASTRVFRASMTDVAEMMFLPQLCELL 120
           MQPTP ALEL+  + RAL  V++ALRY E FDPA STR FR S++D  EM +LP +C  L
Sbjct: 61  MQPTPIALELAAIVGRALDTVREALRYAETFDPAVSTRTFRVSLSDAGEMAYLPAICRAL 120

Query: 121 TAQAPQTRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKAVTCHELLFRETYVCMMRKRP 180
             +AP+ +L V  +P   +E+ALR+ +LDFA GNLPAL   T H LLF ETYVCM  +R 
Sbjct: 121 RERAPRVKLAVRPMPVDEIEDALRSSRLDFAIGNLPALMPRTRHRLLFEETYVCMTGRRR 180

Query: 181 ALPAREQLQLDEFLALSHVLVESAESSHHQVENSFRNLGVQRKISLSIPHFTVLPRILGK 240
            LP  + L L+ FL  SHV V S E SHH ++++ R  GV R I+L +PHF  LP +L  
Sbjct: 181 GLPKTDALSLERFLQASHVQVTSVEHSHHALDDALRAQGVGRNIALEVPHFVALPGVLSV 240

Query: 241 SDLVATVPARIAKLFHSEHPDVFLSYELPVELPAVDITLHWHPAFDADAGNTWLRQIVID 300
           +DL AT+P R+A++ + +  D F  Y LPV LPAV +T+HWH  FD DAG  W+R ++  
Sbjct: 241 TDLYATLPRRLAQILNRD--DAFRIYALPVPLPAVPVTMHWHEHFDEDAGIAWMRDLMAG 298

Query: 301 MLQSY 305
           +++ +
Sbjct: 299 IVEHF 303