BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1105.p (428 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774765.1| phenylpropionate dioxygenase large terminal ... 887 0.0 ref|YP_002779759.1| aromatic hydrocarbon dioxygenase large subun... 673 0.0 ref|ZP_07299926.1| ring hydroxylating dioxygenase, alpha subunit... 665 0.0 ref|YP_702805.1| large subunit of ring-hydroxylating dioxygenase... 662 0.0 gb|ADI12817.1| large subunit of ring-hydroxylating dioxygenase [... 650 0.0 >ref|YP_003774765.1| phenylpropionate dioxygenase large terminal subunit [Herbaspirillum seropedicae SmR1] gb|ADJ62857.1| phenylpropionate dioxygenase large terminal subunit protein [Herbaspirillum seropedicae SmR1] Length = 428 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 423/428 (98%), Positives = 427/428 (99%) Query: 1 MNAPLRFHPRKTDSSYADLVQDAVVDPSLYTDPAIFEAEMDKIFYKTWIWVAHESEIKNP 60 MNAPLRFHPRKTDSSYADLVQDAVVDPSLYTDPA+FEAEMDKIFYKTWIWVAHESEIKNP Sbjct: 1 MNAPLRFHPRKTDSSYADLVQDAVVDPSLYTDPALFEAEMDKIFYKTWIWVAHESEIKNP 60 Query: 61 GDFKTAQIGRQPVIVVRDKTGKINVLENRCRHRGATVCEKHKGNATGFTCPYHSWSYGLD 120 GDFKTAQIGRQPVIVVRDKTGKINVLENRCRHRGATVCEKHKGNATGFTCPYHSWSYGLD Sbjct: 61 GDFKTAQIGRQPVIVVRDKTGKINVLENRCRHRGATVCEKHKGNATGFTCPYHSWSYGLD 120 Query: 121 GKLRGLPYPEGYEDVIEKADLPLQSLRAESYNGMIFASFNQEIEPLSDFLGHAKKWIDLF 180 GKLRGLPYPEGYEDVIEKADLPLQSLR ESY+GMIFASFNQEIEPLSDFLGHAKKWIDLF Sbjct: 121 GKLRGLPYPEGYEDVIEKADLPLQSLRCESYHGMIFASFNQEIEPLSDFLGHAKKWIDLF 180 Query: 181 MKQGAGFPVKVQGEHKFSFKGNWKIQLENTTDGYHFPVVHKTFLSSVDEETSEMLSFMTD 240 MKQGAGFP+KVQGEHKFSFKGNWKIQLENTTDGYHFPVVHKTFLSSVDEETSEMLSFMTD Sbjct: 181 MKQGAGFPIKVQGEHKFSFKGNWKIQLENTTDGYHFPVVHKTFLSSVDEETSEMLSFMTD 240 Query: 241 DQSITRSLGNGHSVMIMVPEHVDLDVDDGSEQLQERFAHVTEELSKTMPPEQVRRIVRSL 300 DQSITRSLGNGHSVMIMVPEHVDLDVDDGSEQLQERFAHVTEELSKTMPPEQVRRIVRSL Sbjct: 241 DQSITRSLGNGHSVMIMVPEHVDLDVDDGSEQLQERFAHVTEELSKTMPPEQVRRIVRSL 300 Query: 301 HGAGFNLNLFPNVAMSMSFFRVLHPVSVGETQIRHVALGMDGGPEIANRERLRIHEHFQG 360 HGAGFNLNLFPNVAMSMSFFRVLHPVSVGETQIRHVALGMDGGPEIANRERLRIHEHFQG Sbjct: 301 HGAGFNLNLFPNVAMSMSFFRVLHPVSVGETQIRHVALGMDGGPEIANRERLRIHEHFQG 360 Query: 361 PFGFGSPDDAEAWERVQAGSHAGRNAPILVNRGLNREWVDDNGDKVSHSTDETGMREAYA 420 PFGFGSPDDAEAWERVQAGSHAGR+APILVNRGLNREWVDDNGDKVSHSTDETGMREAYA Sbjct: 361 PFGFGSPDDAEAWERVQAGSHAGRDAPILVNRGLNREWVDDNGDKVSHSTDETGMREAYA 420 Query: 421 MWKKMMEK 428 MWKKMMEK Sbjct: 421 MWKKMMEK 428 >ref|YP_002779759.1| aromatic hydrocarbon dioxygenase large subunit [Rhodococcus opacus B4] dbj|BAH50814.1| putative aromatic hydrocarbon dioxygenase large subunit [Rhodococcus opacus B4] Length = 432 Score = 673 bits (1736), Expect = 0.0, Method: Composition-based stats. Identities = 307/415 (73%), Positives = 355/415 (85%) Query: 12 TDSSYADLVQDAVVDPSLYTDPAIFEAEMDKIFYKTWIWVAHESEIKNPGDFKTAQIGRQ 71 T + +ADL D V SLYTDP +FEAE++KIFY+TW+WVAHESEI G +K A IGRQ Sbjct: 14 TKTDFADLATDDCVAGSLYTDPDMFEAELEKIFYRTWVWVAHESEIPEAGSYKMATIGRQ 73 Query: 72 PVIVVRDKTGKINVLENRCRHRGATVCEKHKGNATGFTCPYHSWSYGLDGKLRGLPYPEG 131 PVIV RD+ G NVL NRCRHRGA+VCE KG A GFTCPYHSWSY LDG+LRG+PYP+G Sbjct: 74 PVIVNRDRKGNFNVLLNRCRHRGASVCEVPKGKANGFTCPYHSWSYALDGRLRGIPYPDG 133 Query: 132 YEDVIEKADLPLQSLRAESYNGMIFASFNQEIEPLSDFLGHAKKWIDLFMKQGAGFPVKV 191 Y++ ++K DLPLQSLR ESY GMIFASFN ++EPL DFLG AK WIDLFMKQGAG+P+K Sbjct: 134 YDEDLDKKDLPLQSLRVESYAGMIFASFNPDVEPLDDFLGDAKVWIDLFMKQGAGYPIKT 193 Query: 192 QGEHKFSFKGNWKIQLENTTDGYHFPVVHKTFLSSVDEETSEMLSFMTDDQSITRSLGNG 251 QGEH F F+GNWKIQLENTTDGYHFP+VH++++SSVD ET++MLSFMTDD ++T +LGNG Sbjct: 194 QGEHCFRFRGNWKIQLENTTDGYHFPIVHRSWMSSVDAETADMLSFMTDDNAVTHALGNG 253 Query: 252 HSVMIMVPEHVDLDVDDGSEQLQERFAHVTEELSKTMPPEQVRRIVRSLHGAGFNLNLFP 311 HSV IMVPEHVDLD DDGSE++Q RF H+ EELSKTMP +QVRRIVRS+HGAGFNLN+FP Sbjct: 254 HSVAIMVPEHVDLDHDDGSEKIQARFDHIVEELSKTMPADQVRRIVRSMHGAGFNLNIFP 313 Query: 312 NVAMSMSFFRVLHPVSVGETQIRHVALGMDGGPEIANRERLRIHEHFQGPFGFGSPDDAE 371 NVAMSMSFFRVL P++V ET+IRH+ALGMDGGPEI NRERLRIHEHFQGPFGFGSPDD+E Sbjct: 314 NVAMSMSFFRVLRPIAVDETEIRHIALGMDGGPEIVNRERLRIHEHFQGPFGFGSPDDSE 373 Query: 372 AWERVQAGSHAGRNAPILVNRGLNREWVDDNGDKVSHSTDETGMREAYAMWKKMM 426 AW+RVQ GS PI+VNRGLNRE +D NG + SH TDETGMREAYAMWK+MM Sbjct: 374 AWDRVQRGSRGAPGMPIMVNRGLNREALDSNGHRTSHVTDETGMREAYAMWKRMM 428 >ref|ZP_07299926.1| ring hydroxylating dioxygenase, alpha subunit/Rieske (2Fe-2S) protein [Streptomyces hygroscopicus ATCC 53653] gb|EFL28295.1| ring hydroxylating dioxygenase, alpha subunit/Rieske (2Fe-2S) protein [Streptomyces himastatinicus ATCC 53653] Length = 431 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 305/410 (74%), Positives = 357/410 (87%), Gaps = 1/410 (0%) Query: 17 ADLVQDAVVDPSLYTDPAIFEAEMDKIFYKTWIWVAHESEIKNPGDFKTAQIGRQPVIVV 76 A LVQ+ VD SLYTDP +FE EMD+IF +TW+WVAHESEI N GDF+T+ +GRQPVIV Sbjct: 19 ATLVQEDRVDISLYTDPELFELEMDRIFNRTWVWVAHESEIPNAGDFRTSMVGRQPVIVT 78 Query: 77 RDKTGKINVLENRCRHRGATVCEKHKGNATGFTCPYHSWSYGLDGKLRGLPYPEGYEDVI 136 RD+ G INVL NRCRHRGA++CE +GNA GFTCPYH+WSY LDGKLRG+PYP+GYEDV+ Sbjct: 79 RDRRGGINVLLNRCRHRGASLCEAPRGNANGFTCPYHAWSYALDGKLRGIPYPDGYEDVL 138 Query: 137 EKADLPLQSLRAESYNGMIFASFNQEIEPLSDFLGHAKKWIDLFMKQGAGFPVKVQGEHK 196 EK D PL L+ +SY GMIFASFN ++EPL+DFLG A+ W+DLFMKQGAGFPVKVQGEHK Sbjct: 139 EKKDFPLHRLKVDSYAGMIFASFNPDVEPLADFLGPARHWMDLFMKQGAGFPVKVQGEHK 198 Query: 197 FSFKGNWKIQLENTTDGYHFPVVHKTFLSSVDEETSEMLSFMTDDQSITRSLGNGHSVMI 256 F F GNWKIQLENTTDGYHFP+VH++++SSVD ET+EMLSFMTD++++T SLGNGHSVM+ Sbjct: 199 FRFNGNWKIQLENTTDGYHFPIVHRSWMSSVDSETAEMLSFMTDEKAVTHSLGNGHSVMV 258 Query: 257 MVPEHVDLDVDDGSEQLQERFAHVTEELSKTMPPEQVRRIVRSLHGAGFNLNLFPNVAMS 316 MVPEHVDLD DDG+EQLQ RF H+ EELS+ P QVRRIVRS+HGAGFNLNLFPNVAMS Sbjct: 259 MVPEHVDLDEDDGTEQLQGRFGHIVEELSRDYEPAQVRRIVRSMHGAGFNLNLFPNVAMS 318 Query: 317 MSFFRVLHPVSVGETQIRHVALGMDGGPEIANRERLRIHEHFQGPFGFGSPDDAEAWERV 376 M+FFRVL P+S ET+IRH+ALG+DGGPEI NRERLRIHEHFQGPFGFGSPDD+EAW+RV Sbjct: 319 MAFFRVLRPLSATETEIRHMALGLDGGPEIVNRERLRIHEHFQGPFGFGSPDDSEAWDRV 378 Query: 377 QAGSHAGRNAPILVNRGLNREWVDDNGDKVSHSTDETGMREAYAMWKKMM 426 Q G+ AG PI+VNRGL+RE DD+ +V+H+TDETGMREAYAMWK MM Sbjct: 379 QRGAAAGPGVPIMVNRGLSREQ-DDSKGRVAHATDETGMREAYAMWKAMM 427 >ref|YP_702805.1| large subunit of ring-hydroxylating dioxygenase [Rhodococcus jostii RHA1] gb|ABG94647.1| Large subunit of ring-hydroxylating dioxygenase [Rhodococcus jostii RHA1] Length = 424 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 302/413 (73%), Positives = 354/413 (85%) Query: 14 SSYADLVQDAVVDPSLYTDPAIFEAEMDKIFYKTWIWVAHESEIKNPGDFKTAQIGRQPV 73 +++ADL D VD SLYTDP +FE E+++IFY+TW+WVAHESEI G +K A IGRQPV Sbjct: 8 TNFADLATDDRVDGSLYTDPDMFEVELERIFYRTWVWVAHESEIPEAGSYKMATIGRQPV 67 Query: 74 IVVRDKTGKINVLENRCRHRGATVCEKHKGNATGFTCPYHSWSYGLDGKLRGLPYPEGYE 133 IV RD+ G NVL NRCRHRGA+VCE KG A GFTCPYHSWSY LDG+LRG+PYP+GY+ Sbjct: 68 IVNRDRKGNFNVLLNRCRHRGASVCEVPKGKANGFTCPYHSWSYALDGRLRGIPYPDGYD 127 Query: 134 DVIEKADLPLQSLRAESYNGMIFASFNQEIEPLSDFLGHAKKWIDLFMKQGAGFPVKVQG 193 + ++K DLPLQSLR ESY GMIFASFN ++EPL DFLG AK W+DLFMKQGAG+PVK QG Sbjct: 128 ENLDKKDLPLQSLRVESYAGMIFASFNPDVEPLDDFLGDAKVWMDLFMKQGAGYPVKTQG 187 Query: 194 EHKFSFKGNWKIQLENTTDGYHFPVVHKTFLSSVDEETSEMLSFMTDDQSITRSLGNGHS 253 EH F F+GNWKIQLENTTDGYHFP+VH++++SSVD ET++MLSFMTDD ++T +LGNGHS Sbjct: 188 EHCFRFRGNWKIQLENTTDGYHFPIVHRSWMSSVDAETADMLSFMTDDNAVTHALGNGHS 247 Query: 254 VMIMVPEHVDLDVDDGSEQLQERFAHVTEELSKTMPPEQVRRIVRSLHGAGFNLNLFPNV 313 V IMVPEHVDLD DDG+E++Q RF H+ EELSKTMP ++VRRIVRS+HGAGFNLN+FPNV Sbjct: 248 VAIMVPEHVDLDHDDGTEKIQARFDHIVEELSKTMPADKVRRIVRSMHGAGFNLNIFPNV 307 Query: 314 AMSMSFFRVLHPVSVGETQIRHVALGMDGGPEIANRERLRIHEHFQGPFGFGSPDDAEAW 373 AMSMSFFRVL P+SV ET+IRH+ALGMDGGPEI NRERLRIHEHFQGPFGFGSPDD+EAW Sbjct: 308 AMSMSFFRVLRPISVDETEIRHIALGMDGGPEIVNRERLRIHEHFQGPFGFGSPDDSEAW 367 Query: 374 ERVQAGSHAGRNAPILVNRGLNREWVDDNGDKVSHSTDETGMREAYAMWKKMM 426 +RVQ GS PI+VNRGL RE +D +G + SH TDETGMREAYAMWK+MM Sbjct: 368 DRVQRGSRGAPGMPIMVNRGLGREALDSDGHRTSHVTDETGMREAYAMWKRMM 420 >gb|ADI12817.1| large subunit of ring-hydroxylating dioxygenase [Streptomyces bingchenggensis BCW-1] Length = 421 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 297/408 (72%), Positives = 343/408 (84%) Query: 19 LVQDAVVDPSLYTDPAIFEAEMDKIFYKTWIWVAHESEIKNPGDFKTAQIGRQPVIVVRD 78 LV V +LYTDP +FE EMD+IF++TW+WVAHESEI GDFKTA +GR+PVIV RD Sbjct: 10 LVDSDRVAGTLYTDPVLFEREMDRIFHRTWVWVAHESEIAKAGDFKTAWVGRRPVIVTRD 69 Query: 79 KTGKINVLENRCRHRGATVCEKHKGNATGFTCPYHSWSYGLDGKLRGLPYPEGYEDVIEK 138 + G INVL NRCRHRGA+VCE KGN GFTCPYH+WSY LDG LRG+PYPEGYED++EK Sbjct: 70 RRGGINVLLNRCRHRGASVCESPKGNGNGFTCPYHAWSYALDGTLRGIPYPEGYEDIVEK 129 Query: 139 ADLPLQSLRAESYNGMIFASFNQEIEPLSDFLGHAKKWIDLFMKQGAGFPVKVQGEHKFS 198 DLPLQ LR +Y GM+FASF+ +IEPL DFLG A+ WID FMKQGAG+P+KVQGEHKF Sbjct: 130 KDLPLQRLRVGTYAGMVFASFDHDIEPLEDFLGGARLWIDRFMKQGAGYPIKVQGEHKFR 189 Query: 199 FKGNWKIQLENTTDGYHFPVVHKTFLSSVDEETSEMLSFMTDDQSITRSLGNGHSVMIMV 258 F+GNWKIQLENTTD YHFP+VH++++SSVD ET+ MLS MTD+ ++T +LGNGHSV + V Sbjct: 190 FQGNWKIQLENTTDWYHFPIVHRSWMSSVDAETASMLSIMTDETAVTHALGNGHSVSVSV 249 Query: 259 PEHVDLDVDDGSEQLQERFAHVTEELSKTMPPEQVRRIVRSLHGAGFNLNLFPNVAMSMS 318 H DLD+DDG+E+LQ+RF H+ EELSK +PPE+VRRIVRSLHGAGFNLNLFPNVAMSMS Sbjct: 250 AGHADLDIDDGTEKLQDRFGHIVEELSKDLPPERVRRIVRSLHGAGFNLNLFPNVAMSMS 309 Query: 319 FFRVLHPVSVGETQIRHVALGMDGGPEIANRERLRIHEHFQGPFGFGSPDDAEAWERVQA 378 FFRVL P+SV ET+IRHVALG+DGGPEI NRERLRIHEHFQGPFGFGSPDDAEAW RVQ Sbjct: 310 FFRVLRPISVAETEIRHVALGLDGGPEIVNRERLRIHEHFQGPFGFGSPDDAEAWNRVQR 369 Query: 379 GSHAGRNAPILVNRGLNREWVDDNGDKVSHSTDETGMREAYAMWKKMM 426 G G + PILVNRGL RE +D G SH+TDETGMREAYAMWK MM Sbjct: 370 GVAGGADMPILVNRGLGREEPNDLGQPTSHATDETGMREAYAMWKAMM 417