BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1104.p (169 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774764.1| phenylpropionate dioxygenase small subunit [... 313 8e-84 ref|ZP_02881937.1| aromatic-ring-hydroxylating dioxygenase beta ... 185 2e-45 ref|YP_003909112.1| aromatic-ring-hydroxylating dioxygenase subu... 184 5e-45 ref|YP_003608574.1| aromatic-ring-hydroxylating dioxygenase subu... 183 9e-45 ref|YP_004360148.1| Ring hydroxylating beta subunit family prote... 178 2e-43 >ref|YP_003774764.1| phenylpropionate dioxygenase small subunit [Herbaspirillum seropedicae SmR1] gb|ADJ62856.1| phenylpropionate dioxygenase small subunit protein [Herbaspirillum seropedicae SmR1] Length = 166 Score = 313 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 156/166 (93%), Positives = 162/166 (97%) Query: 4 MNQHDTLQGIPAPMARAIAFIWKEAELLDKKDYAAWQALWTEDGYYVVPIDPDTTDYAAS 63 M+Q DTLQG+PAPMARAIAFIWKEAELLD+KDYAAWQ LW+EDGYYVVPIDP+TTDYAA+ Sbjct: 1 MSQQDTLQGLPAPMARAIAFIWKEAELLDRKDYAAWQDLWSEDGYYVVPIDPETTDYAAT 60 Query: 64 LNYAYDNAHMRKIRIERLTSGHAMSAVDAAATVRTVSRFVPVHLSEELVEITSAQVLVGY 123 LNYAYDNAHMRKIRIERLTSGHAMSAVDAAATVRTVSRF PVHLSEELVEI SAQVLVGY Sbjct: 61 LNYAYDNAHMRKIRIERLTSGHAMSAVDAAATVRTVSRFAPVHLSEELVEINSAQVLVGY 120 Query: 124 KRQQHTMFVANVTHRLRFTPQGPKIEQKVIRLINSMDSLNALGFLL 169 KRQQHTMFVANVTHRLRFTPQGPKIEQKVIRLINSMDSLNALGFLL Sbjct: 121 KRQQHTMFVANVTHRLRFTPQGPKIEQKVIRLINSMDSLNALGFLL 166 >ref|ZP_02881937.1| aromatic-ring-hydroxylating dioxygenase beta subunit [Burkholderia graminis C4D1M] gb|EDT12182.1| aromatic-ring-hydroxylating dioxygenase beta subunit [Burkholderia graminis C4D1M] Length = 166 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 87/152 (57%), Positives = 120/152 (78%) Query: 18 ARAIAFIWKEAELLDKKDYAAWQALWTEDGYYVVPIDPDTTDYAASLNYAYDNAHMRKIR 77 ARAI FIW+EAELLD++DY AW +W G YVVPIDPDTTDYA++LNYA+D+ HMR++R Sbjct: 15 ARAIEFIWREAELLDRRDYHAWLQMWDPKGVYVVPIDPDTTDYASTLNYAFDDQHMRELR 74 Query: 78 IERLTSGHAMSAVDAAATVRTVSRFVPVHLSEELVEITSAQVLVGYKRQQHTMFVANVTH 137 ++R+TSG++ SA DAA TVRTVSRF S +L+E+ S+Q+++ YKR T+F A++TH Sbjct: 75 VQRMTSGYSASASDAARTVRTVSRFTRSSESADLIEVKSSQIIIAYKRGVSTIFAADLTH 134 Query: 138 RLRFTPQGPKIEQKVIRLINSMDSLNALGFLL 169 ++ P++ +KVIRLINS ++LNA+GFLL Sbjct: 135 KISMADGEPRLVEKVIRLINSTEALNAIGFLL 166 >ref|YP_003909112.1| aromatic-ring-hydroxylating dioxygenase subunit beta [Burkholderia sp. CCGE1003] gb|ADN59821.1| aromatic-ring-hydroxylating dioxygenase beta subunit [Burkholderia sp. CCGE1003] Length = 166 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 88/152 (57%), Positives = 119/152 (78%) Query: 18 ARAIAFIWKEAELLDKKDYAAWQALWTEDGYYVVPIDPDTTDYAASLNYAYDNAHMRKIR 77 ARAI FIW EAELLD++DY AW LW G YVVPIDP+TTDYAA+LNYA+D+ HMR++R Sbjct: 15 ARAIEFIWHEAELLDRRDYHAWLDLWDSKGMYVVPIDPNTTDYAATLNYAFDDHHMRELR 74 Query: 78 IERLTSGHAMSAVDAAATVRTVSRFVPVHLSEELVEITSAQVLVGYKRQQHTMFVANVTH 137 ++R+TSG++ SA DAA TVRTVSRF S ++VE+ S+Q+++ YKR T+F A++TH Sbjct: 75 VQRMTSGYSASASDAARTVRTVSRFTRSSDSADIVEVNSSQIIIAYKRGVSTIFAADLTH 134 Query: 138 RLRFTPQGPKIEQKVIRLINSMDSLNALGFLL 169 ++ P++ +KVIRLINS ++LNA+GFLL Sbjct: 135 KISMKNGEPRLVEKVIRLINSTEALNAIGFLL 166 >ref|YP_003608574.1| aromatic-ring-hydroxylating dioxygenase subunit beta [Burkholderia sp. CCGE1002] gb|ADG19063.1| aromatic-ring-hydroxylating dioxygenase beta subunit [Burkholderia sp. CCGE1002] Length = 166 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 87/152 (57%), Positives = 120/152 (78%) Query: 18 ARAIAFIWKEAELLDKKDYAAWQALWTEDGYYVVPIDPDTTDYAASLNYAYDNAHMRKIR 77 ARAI FIW+EAELLD++DY W LW GYYVVPIDP+TTDYAA+LNYAYD+ HMR++R Sbjct: 15 ARAIEFIWREAELLDRRDYREWLELWDPAGYYVVPIDPNTTDYAATLNYAYDDQHMRELR 74 Query: 78 IERLTSGHAMSAVDAAATVRTVSRFVPVHLSEELVEITSAQVLVGYKRQQHTMFVANVTH 137 ++R+TSG++ SA DAA TVRTVSRF + ++VE+ S+Q+++ YKR T+F A++TH Sbjct: 75 VQRMTSGYSASASDAARTVRTVSRFTLASDAADVVEVKSSQIIIAYKRGTPTIFAADLTH 134 Query: 138 RLRFTPQGPKIEQKVIRLINSMDSLNALGFLL 169 ++ P++ +KVIRLI+S D+L+A+GFLL Sbjct: 135 KISMASGEPRLVEKVIRLIDSTDALSAIGFLL 166 >ref|YP_004360148.1| Ring hydroxylating beta subunit family protein [Burkholderia gladioli BSR3] gb|AEA60192.1| Ring hydroxylating beta subunit family protein [Burkholderia gladioli BSR3] Length = 166 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 90/166 (54%), Positives = 124/166 (74%), Gaps = 1/166 (0%) Query: 4 MNQHDTLQGIPAPMARAIAFIWKEAELLDKKDYAAWQALWTEDGYYVVPIDPDTTDYAAS 63 MN +DTL RA+ FIW+EAELLD++DY W LW G+YVVPIDP TD+AA+ Sbjct: 2 MNDYDTLIS-DDTFLRAVRFIWREAELLDRRDYREWLTLWEPAGHYVVPIDPAATDFAAT 60 Query: 64 LNYAYDNAHMRKIRIERLTSGHAMSAVDAAATVRTVSRFVPVHLSEELVEITSAQVLVGY 123 LNYAYD+ MR+ R++R+TSG+++SA DAA TVRTVSRF+P ++ E +EI S+QV++ Y Sbjct: 61 LNYAYDDHAMREKRVDRMTSGYSVSASDAARTVRTVSRFMPGAVTAEGIEIRSSQVVIAY 120 Query: 124 KRQQHTMFVANVTHRLRFTPQGPKIEQKVIRLINSMDSLNALGFLL 169 KR T+F A++TH L + P++ QKV+RLI+S ++LNA+GFLL Sbjct: 121 KRAVITIFAADLTHTLNLDGETPRLVQKVVRLIDSTEALNAIGFLL 166