BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1103.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774763.1| flavodoxin reductases (ferredoxin-NADPH redu... 582 e-164 ref|YP_002233274.1| putative oxidoreductase [Burkholderia cenoce... 348 7e-94 ref|YP_001777540.1| ferredoxin [Burkholderia cenocepacia MC0-3] ... 344 1e-92 ref|YP_001810210.1| ferredoxin [Burkholderia ambifaria MC40-6] >... 341 8e-92 ref|ZP_02907768.1| ferredoxin [Burkholderia ambifaria MEX-5] >gi... 340 1e-91 >ref|YP_003774763.1| flavodoxin reductases (ferredoxin-NADPH reductases) family 1 protein [Herbaspirillum seropedicae SmR1] gb|ADJ62855.1| flavodoxin reductases (ferredoxin-NADPH reductases) family 1 protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 300/318 (94%), Positives = 305/318 (95%) Query: 1 MKLIVDTVTDETGDIRSFRLVRADGAPLPAYEPGAHIDVTGPTGIMRQYSLCGPLEDRCG 60 MKLIVDT+TDETGDIRSFRLVRADGAPLPAYEPGAHIDVTGPTGIMRQYSLCGPLEDRCG Sbjct: 1 MKLIVDTLTDETGDIRSFRLVRADGAPLPAYEPGAHIDVTGPTGIMRQYSLCGPLEDRCG 60 Query: 61 YTIAVKREPASRGGSAALHDAVKPGMELEVGTPRNLFALDAGAQEHLLFGAGIGVTPLLA 120 YTIAVKRE ASRGGSAALHD VK GMELEVGTPRNLFALDA A EHLLFGAGIGVTPLLA Sbjct: 61 YTIAVKRESASRGGSAALHDVVKAGMELEVGTPRNLFALDASAPEHLLFGAGIGVTPLLA 120 Query: 121 MAYRLWAEQKPFTLHYFVRAREHAAFADLLENAPFAAQVRFHYAVMPAQMDHYLTACLEA 180 MAYRLWAE+K FTLHYFVRAREHAAFADLLENAPFAA VRFHYAVMPAQM+HYLT CLEA Sbjct: 121 MAYRLWAEEKRFTLHYFVRAREHAAFADLLENAPFAAHVRFHYAVMPAQMEHYLTVCLEA 180 Query: 181 GSKEAHVYTCGPAPFMDAVVKCAAANRSEEAIHLEHFQAAPAASEAVGGDGVFEVQLASS 240 GSKEAHVYTCGPAPFMDAVVKCA+A RSEEAIHLEHFQAAPAA A GGDG FEV+LASS Sbjct: 181 GSKEAHVYTCGPAPFMDAVVKCASATRSEEAIHLEHFQAAPAAPAAAGGDGAFEVKLASS 240 Query: 241 GKVVQIPVGIPIVDILAREGIVIDTSCREGICGTCVVPLLEGEPDHRDNCLSKKEKAAND 300 GKVVQIPVGIPIVDILAREGIVIDTSCREGICGTCVVPLLEGEPDHRDNCLSKKEKAAND Sbjct: 241 GKVVQIPVGIPIVDILAREGIVIDTSCREGICGTCVVPLLEGEPDHRDNCLSKKEKAAND 300 Query: 301 QICTCVSRARSGMLVLDL 318 QICTCVSRARSGMLVLDL Sbjct: 301 QICTCVSRARSGMLVLDL 318 >ref|YP_002233274.1| putative oxidoreductase [Burkholderia cenocepacia J2315] emb|CAR54509.1| putative oxidoreductase [Burkholderia cenocepacia J2315] Length = 329 Score = 348 bits (893), Expect = 7e-94, Method: Composition-based stats. Identities = 184/320 (57%), Positives = 218/320 (68%), Gaps = 6/320 (1%) Query: 5 VDTVTDETGDIRSFRLVRADGAPLPAYEPGAHIDVTGPTGIMRQYSLCGPLEDRCGYTIA 64 +D + D DIR FR+ R DG P AYEPGAHIDVT P+GI RQYSLCG ++R Y A Sbjct: 10 IDALIDAAQDIRCFRVSRVDGQPFDAYEPGAHIDVTAPSGITRQYSLCGNPDERGSYLFA 69 Query: 65 VKREPASRGGSAALHDAVKPGMELEVGTPRNLFALDAGAQEHLLFGAGIGVTPLLAMAYR 124 VK+E SRGGS +LHD V G EL +GTPRNLF L A EH+L AGIG+TPLL+MAY Sbjct: 70 VKKEARSRGGSRSLHDDVSVGAELSIGTPRNLFRLTDDASEHVLVAAGIGITPLLSMAYA 129 Query: 125 LWAEQKPFTLHYFVRAREHAAFADLLENAPFAAQVRFHYAVMPAQMDHYLTACLEAGSKE 184 L + LHYF R+R+HAAF D L PFAA V FHY V P + L C+E+ Sbjct: 130 LHKRGARYRLHYFARSRDHAAFVDELSAGPFAAHVTFHYGVEPDALAAELGRCMESIDPT 189 Query: 185 AHVYTCGPAPFMDAVVKCAAANRSEEAIHLEHFQAAPAASEA------VGGDGVFEVQLA 238 AHVYTCGP PFMDAVV AA E+AIHLE F A P A++A G G FEV+L Sbjct: 190 AHVYTCGPGPFMDAVVAAAATRIPEDAIHLERFAAEPVAADAGNAEAGSGPAGGFEVRLH 249 Query: 239 SSGKVVQIPVGIPIVDILAREGIVIDTSCREGICGTCVVPLLEGEPDHRDNCLSKKEKAA 298 SG+ V++ IVD LA GI +DTSC EG+CGTC+VP+L+GEPDHRD+CLSK E+A+ Sbjct: 250 RSGQSVRVAPDTSIVDALATIGIEVDTSCGEGVCGTCMVPVLDGEPDHRDHCLSKAERAS 309 Query: 299 NDQICTCVSRARSGMLVLDL 318 N IC CVSRARS +LVLDL Sbjct: 310 NTVICCCVSRARSAVLVLDL 329 >ref|YP_001777540.1| ferredoxin [Burkholderia cenocepacia MC0-3] gb|ACA93050.1| ferredoxin [Burkholderia cenocepacia MC0-3] Length = 325 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 180/317 (56%), Positives = 219/317 (69%), Gaps = 4/317 (1%) Query: 5 VDTVTDETGDIRSFRLVRADGAPLPAYEPGAHIDVTGPTGIMRQYSLCGPLEDRCGYTIA 64 +D + D DIR FR+ R DG P AYEPGAHIDVT P+G+ RQYSLCG ++R Y A Sbjct: 10 IDALIDAAQDIRCFRVSRVDGQPFDAYEPGAHIDVTAPSGVTRQYSLCGNPDERGSYLFA 69 Query: 65 VKREPASRGGSAALHDAVKPGMELEVGTPRNLFALDAGAQEHLLFGAGIGVTPLLAMAYR 124 VK+E SRGGS +LHD V G EL +GTPRNLF L A EH+L AGIG+TPLL+MAY Sbjct: 70 VKKEAQSRGGSRSLHDDVSVGAELSIGTPRNLFHLTDDASEHVLIAAGIGITPLLSMAYA 129 Query: 125 LWAEQKPFTLHYFVRAREHAAFADLLENAPFAAQVRFHYAVMPAQMDHYLTACLEAGSKE 184 L + LHYF R+R HAAF D L PFA+ V FHY V P + L C+E+ + Sbjct: 130 LHKRGARYRLHYFARSRAHAAFVDALSAEPFASHVTFHYGVEPDALAAELGRCIESIDLK 189 Query: 185 AHVYTCGPAPFMDAVVKCAAANRSEEAIHLEHFQAAPAAS---EAVGGDGVFEVQLASSG 241 AHVYTCGP PFMDAVV AA E+AIHLE F A P+A+ +A +G FEV+L SG Sbjct: 190 AHVYTCGPGPFMDAVVAAAAERIPEDAIHLERFAAEPSATVTADAAPAEG-FEVRLQRSG 248 Query: 242 KVVQIPVGIPIVDILAREGIVIDTSCREGICGTCVVPLLEGEPDHRDNCLSKKEKAANDQ 301 + V++ IVD LA GI +DTSC EG+CGTC+VP+++GEPDHRD+CLSK E+A+N Sbjct: 249 QSVRVAPDTSIVDALATIGIEVDTSCGEGVCGTCMVPVIDGEPDHRDHCLSKAERASNTV 308 Query: 302 ICTCVSRARSGMLVLDL 318 IC CVSRARS +LVLDL Sbjct: 309 ICCCVSRARSAVLVLDL 325 >ref|YP_001810210.1| ferredoxin [Burkholderia ambifaria MC40-6] gb|ACB65994.1| ferredoxin [Burkholderia ambifaria MC40-6] Length = 326 Score = 341 bits (875), Expect = 8e-92, Method: Composition-based stats. Identities = 183/317 (57%), Positives = 218/317 (68%), Gaps = 3/317 (0%) Query: 5 VDTVTDETGDIRSFRLVRADGAPLPAYEPGAHIDVTGPTGIMRQYSLCGPLEDRCGYTIA 64 +D + D DIR FR+ R DG P AYEPGAHIDVT P+G+ RQYSLCG ++R Y A Sbjct: 10 IDALIDAAQDIRCFRVSRVDGQPFDAYEPGAHIDVTAPSGVTRQYSLCGRPDERGSYLFA 69 Query: 65 VKREPASRGGSAALHDAVKPGMELEVGTPRNLFALDAGAQEHLLFGAGIGVTPLLAMAYR 124 VK+E SRGGS +LHD V G EL +G PRNLF L A EH+L AGIG+TPLL+MAY Sbjct: 70 VKKEARSRGGSRSLHDDVCVGAELSIGAPRNLFRLTDNASEHVLIAAGIGITPLLSMAYA 129 Query: 125 LWAEQKPFTLHYFVRAREHAAFADLLENAPFAAQVRFHYAVMPAQMDHYLTACLEAGSKE 184 L + LHYF R+REHAAF D L APFAA V FHY + P + L C+EA Sbjct: 130 LEQRGARYRLHYFARSREHAAFVDELSAAPFAAHVTFHYGIEPDTLAAELGRCVEAIDAH 189 Query: 185 AHVYTCGPAPFMDAVVKCAAANRSEEAIHLEHFQAAPAASEAVGGDGV---FEVQLASSG 241 AHVYTCGP PFMDAVV AA E+AIHLE F A PAA++A FEV+L SG Sbjct: 190 AHVYTCGPGPFMDAVVSAAATRIPEDAIHLERFAAEPAAADAATDATPAEGFEVRLQRSG 249 Query: 242 KVVQIPVGIPIVDILAREGIVIDTSCREGICGTCVVPLLEGEPDHRDNCLSKKEKAANDQ 301 + V++ IVD LAR GI +DTSC EG+CGTC+VP+L+GEPDHRD+CLS+ E+A+N Sbjct: 250 QSVRVAPDTSIVDALARIGIEVDTSCGEGVCGTCMVPVLDGEPDHRDHCLSQAERASNTV 309 Query: 302 ICTCVSRARSGMLVLDL 318 IC CVSRARS +LVLDL Sbjct: 310 ICCCVSRARSAVLVLDL 326 >ref|ZP_02907768.1| ferredoxin [Burkholderia ambifaria MEX-5] gb|EDT41096.1| ferredoxin [Burkholderia ambifaria MEX-5] Length = 326 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 184/317 (58%), Positives = 218/317 (68%), Gaps = 3/317 (0%) Query: 5 VDTVTDETGDIRSFRLVRADGAPLPAYEPGAHIDVTGPTGIMRQYSLCGPLEDRCGYTIA 64 +D + D DIR FR+ R DG P AYEPGAHIDVT P+G+ RQYSLCG ++R Y A Sbjct: 10 IDALIDAAQDIRCFRVSRVDGQPFDAYEPGAHIDVTAPSGVTRQYSLCGRPDERGSYLFA 69 Query: 65 VKREPASRGGSAALHDAVKPGMELEVGTPRNLFALDAGAQEHLLFGAGIGVTPLLAMAYR 124 VK+E SRGGS +LHD V G EL +G PRNLF L A EH+L AGIG+TPLL+MAY Sbjct: 70 VKKEARSRGGSRSLHDDVCVGAELSIGAPRNLFRLTDDASEHVLVAAGIGITPLLSMAYA 129 Query: 125 LWAEQKPFTLHYFVRAREHAAFADLLENAPFAAQVRFHYAVMPAQMDHYLTACLEAGSKE 184 L + LHYF R+REHAAF D L APFAA V FHY + P + L C+EA Sbjct: 130 LEQRGARYRLHYFARSREHAAFVDELSAAPFAAHVTFHYGIEPDALAAELGRCVEAIDAH 189 Query: 185 AHVYTCGPAPFMDAVVKCAAANRSEEAIHLEHFQAAPAASEAVGGDGV---FEVQLASSG 241 AHVYTCGP PFMDAVV AA E+AIHLE F A PAA++A FEV+L SG Sbjct: 190 AHVYTCGPGPFMDAVVAAAATRIPEDAIHLERFAAEPAAADAATDAAPAEGFEVRLQRSG 249 Query: 242 KVVQIPVGIPIVDILAREGIVIDTSCREGICGTCVVPLLEGEPDHRDNCLSKKEKAANDQ 301 + V++ IVD LAR GI +DTSC EG+CGTC+VP+L+GEPDHRD+CLSK E+A+N Sbjct: 250 QSVRVAPDTSIVDALARIGIEVDTSCGEGVCGTCMVPVLDGEPDHRDHCLSKAERASNTV 309 Query: 302 ICTCVSRARSGMLVLDL 318 IC CVSRARS +LVLDL Sbjct: 310 ICCCVSRARSAVLVLDL 326