BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1101.p         (213 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774761.1| two component response regulator protein [He...   404   e-111
gb|EGD02782.1| two component LuxR family transcriptional regulat...   242   3e-62
ref|YP_001585050.1| two component LuxR family transcriptional re...   241   5e-62
ref|ZP_03583791.1| C4-dicarboxylate transport transcriptional re...   241   7e-62
ref|YP_001947837.1| LuxR family two component transcriptional re...   240   1e-61

>ref|YP_003774761.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62853.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 214

 Score =  404 bits (1039), Expect = e-111,   Method: Composition-based stats.
 Identities = 206/213 (96%), Positives = 209/213 (98%)

Query: 1   METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFDGPEAFLKAYDANSLSCLILDVRMP 60
           METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECF+GPEAFLKAYDANSLSCLILDVRMP
Sbjct: 2   METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFEGPEAFLKAYDANSLSCLILDVRMP 61

Query: 61  EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120
           EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT
Sbjct: 62  EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 121

Query: 121 LKNVAGNMHARERRQQLKARLKTLTAREREILEKVIMGQSSKLIARDLNISVKTVDVHRA 180
           LK+VAGNM AR RRQQLKARLKTLTAREREILEKVIMGQSSKLIAR+LNISVKTVDVHRA
Sbjct: 122 LKHVAGNMQARTRRQQLKARLKTLTAREREILEKVIMGQSSKLIARELNISVKTVDVHRA 181

Query: 181 SVKDKLGCQSTATLVRDVLMDFGSDFLGLPTAA 213
           SVKDKLGCQSTATLVRDVLMDFGSDFL LP AA
Sbjct: 182 SVKDKLGCQSTATLVRDVLMDFGSDFLRLPKAA 214


>gb|EGD02782.1| two component LuxR family transcriptional regulator [Burkholderia
           sp. TJI49]
          Length = 210

 Score =  242 bits (617), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 128/206 (62%), Positives = 156/206 (75%), Gaps = 2/206 (0%)

Query: 1   METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFDGPEAFLKAYDANSLSCLILDVRMP 60
           M +  P+VYIVDDD  +RTSLAWLL SV I +E F     FL  +DAN  +CL+LDVRMP
Sbjct: 1   MTSPAPIVYIVDDDSGMRTSLAWLLESVGIVSEGFANAADFLARFDANLPACLVLDVRMP 60

Query: 61  EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120
           E SGF +Q  L   GA +PVIFVSGHGDIPMSVRAL NGA+DF+EKPYNSQQMLER+Q  
Sbjct: 61  EKSGFDVQAELNARGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRA 120

Query: 121 LKNVAGNMHARERR-QQLKARLKTLTAREREILEKVIMGQSSKLIARDLNISVKTVDVHR 179
           L+ +A   HA +RR ++L+ RL  LTARE+E+L  V+ G+ SK IA DL+ISVKTVDVHR
Sbjct: 121 LR-LAQQRHAVDRRHRELRQRLDALTAREKEVLRGVVDGKGSKQIASDLSISVKTVDVHR 179

Query: 180 ASVKDKLGCQSTATLVRDVLMDFGSD 205
           AS+K+KLG  S A LVRDV++ +G D
Sbjct: 180 ASIKEKLGATSIAALVRDVMVVWGGD 205


>ref|YP_001585050.1| two component LuxR family transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 gb|ABX18758.1| two component transcriptional regulator, LuxR family [Burkholderia
           multivorans ATCC 17616]
          Length = 241

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 124/205 (60%), Positives = 153/205 (74%)

Query: 1   METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFDGPEAFLKAYDANSLSCLILDVRMP 60
           M +  P+VYIVDDD  +RTSLAWLL SV I +E F     FL  +DAN  +CL+LDVRMP
Sbjct: 32  MTSPAPIVYIVDDDGGMRTSLAWLLESVGIASEGFANAADFLARFDANLPACLVLDVRMP 91

Query: 61  EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120
           E SGF +Q  L   GA +PVIFVSGHGDIPMSVRAL NGA+DF+EKPYNSQQMLER+Q  
Sbjct: 92  EKSGFDVQAELNARGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRA 151

Query: 121 LKNVAGNMHARERRQQLKARLKTLTAREREILEKVIMGQSSKLIARDLNISVKTVDVHRA 180
           L+       A +R ++L+ RL  LTARE+E+L+ V+ G+ SK IA DL+ISVKTVDVHRA
Sbjct: 152 LRLAQQRHVADQRHRELRERLAALTAREKEVLQGVVDGKGSKQIASDLSISVKTVDVHRA 211

Query: 181 SVKDKLGCQSTATLVRDVLMDFGSD 205
           S+K+KLG  S A LVRDV++ +G +
Sbjct: 212 SIKEKLGATSIAALVRDVMVVWGDE 236


>ref|ZP_03583791.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD1]
 gb|EEE02234.1| C4-dicarboxylate transport transcriptional regulatory protein DctR
           [Burkholderia multivorans CGD1]
          Length = 210

 Score =  241 bits (614), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 124/205 (60%), Positives = 153/205 (74%)

Query: 1   METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFDGPEAFLKAYDANSLSCLILDVRMP 60
           M +  P+VYIVDDD  +RTSLAWLL SV I +E F     FL  +DAN  +CL+LDVRMP
Sbjct: 1   MTSPAPIVYIVDDDGGMRTSLAWLLESVGIASEGFANAADFLARFDANLPACLVLDVRMP 60

Query: 61  EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120
           E SGF +Q  L   GA +PVIFVSGHGDIPMSVRAL NGA+DF+EKPYNSQQMLER+Q  
Sbjct: 61  EKSGFDVQAELNARGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRA 120

Query: 121 LKNVAGNMHARERRQQLKARLKTLTAREREILEKVIMGQSSKLIARDLNISVKTVDVHRA 180
           L+       A +R ++L+ RL  LTARE+E+L+ V+ G+ SK IA DL+ISVKTVDVHRA
Sbjct: 121 LRLAQQRHAADQRHRELRERLAALTAREKEVLQGVVDGKGSKQIASDLSISVKTVDVHRA 180

Query: 181 SVKDKLGCQSTATLVRDVLMDFGSD 205
           S+K+KLG  S A LVRDV++ +G +
Sbjct: 181 SIKEKLGATSIAALVRDVMVVWGDE 205


>ref|YP_001947837.1| LuxR family two component transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
 dbj|BAG45301.1| LuxR family two component transcriptional regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 210

 Score =  240 bits (612), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 124/205 (60%), Positives = 153/205 (74%)

Query: 1   METNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFDGPEAFLKAYDANSLSCLILDVRMP 60
           M +  P+VYIVDDD  +RTSLAWLL SV I +E F     FL  +DAN  +CL+LDVRMP
Sbjct: 1   MTSPAPIVYIVDDDGGMRTSLAWLLESVGIASEGFANAADFLARFDANLPACLVLDVRMP 60

Query: 61  EISGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQMT 120
           E SGF +Q  L   GA +PVIFVSGHGDIPMSVRAL NGA+DF+EKPYNSQQMLER+Q  
Sbjct: 61  EKSGFDVQAELNARGATLPVIFVSGHGDIPMSVRALQNGAIDFVEKPYNSQQMLERVQRA 120

Query: 121 LKNVAGNMHARERRQQLKARLKTLTAREREILEKVIMGQSSKLIARDLNISVKTVDVHRA 180
           L+       A +R ++L+ RL  LTARE+E+L+ V+ G+ SK IA DL+ISVKTVDVHRA
Sbjct: 121 LRLAQQRHVADQRHRELRERLAALTAREKEVLQGVVDGKGSKQIASDLSISVKTVDVHRA 180

Query: 181 SVKDKLGCQSTATLVRDVLMDFGSD 205
           S+K+KLG  S A LVRDV++ +G +
Sbjct: 181 SIKEKLGATSIAALVRDVMVVWGDE 205