BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1100.p (515 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774760.1| methyl-accepting chemotaxis transducer trans... 672 0.0 ref|YP_003776428.1| methyl-accepting chemotaxis transducer trans... 424 e-116 ref|YP_002553209.1| methyl-accepting chemotaxis sensory transduc... 397 e-108 ref|ZP_04765383.1| methyl-accepting chemotaxis sensory transduce... 386 e-105 ref|YP_002551663.1| methyl-accepting chemotaxis sensory transduc... 385 e-104 >ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62852.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 672 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 461/515 (89%), Positives = 487/515 (94%) Query: 1 MIKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAQQTQQMMDVPLKTERLVSQWNTL 60 MIK+IRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVA QTQQMMDVPLKTERLVSQWNTL Sbjct: 1 MIKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTL 60 Query: 61 LLIAIQRTTTVVKSRDPELEAFLAKEAAASSKESAQTLKDVEQLLTSEEEKKLFAAINAA 120 LLIAIQRTTTVVKS DPELEAFLAKEAAASSKESAQTLKDVEQLL SEEEKK+FAAIN A Sbjct: 61 LLIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVA 120 Query: 121 RKQFLAIRDQIYAAKKEGDAAKVDQLYQQQYVGIANNTQGAMRSLLDFERARIDEISADI 180 RKQFL IRDQIYAAKK+GDAA+V++LYQ+QYVGIA +TQ AMR+LLDFERARID+ISA I Sbjct: 121 RKQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQI 180 Query: 181 QKDAASSQWQIFALEAVILACGIAFALLLTRSITRPVHAALAISQRVAAGDLTSRAQPMG 240 Q+DA+SSQ QI LE VIL CGIAFA+LLTRSITRPVH ALAISQRVAAGDLTSRAQ MG Sbjct: 181 QQDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQAMG 240 Query: 241 QDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEET 300 +DELGQLVASLQGMSERLHGVVSTVR GADSIA+ASGEIANGNLDLSARTEEQAGALE+T Sbjct: 241 RDELGQLVASLQGMSERLHGVVSTVRHGADSIAMASGEIANGNLDLSARTEEQAGALEQT 300 Query: 301 AASIEQLTSSVRTNSENAHQANDLVKSAASIAGQGGQVMQELIDTMGNINSSSRKIVDII 360 AASIE+LTSSVRTNS+NAHQAN+LV +AAS+AGQGG VM +LI TM IN SSRKIVDII Sbjct: 301 AASIEELTSSVRTNSDNAHQANELVSTAASVAGQGGAVMDQLISTMATINDSSRKIVDII 360 Query: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSASAAKEIKQLIDDSV 420 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSA+AAKEIKQLIDDSV Sbjct: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSV 420 Query: 421 SKVDAGSELVERAGKTMQEVVGSVQGAHALVGDISTASREQAEGIHQVNQAVSQMDGVTQ 480 KV AGS LVE+AGKTMQEVVGSVQGAH LVG+ISTASR+QAEGIHQVNQAV QMDGVTQ Sbjct: 421 GKVSAGSTLVEQAGKTMQEVVGSVQGAHTLVGEISTASRQQAEGIHQVNQAVGQMDGVTQ 480 Query: 481 QNAALVEQAAAAAKSLEDQAAQLKRAVAFFSLQAA 515 QNAALVEQAAAAAKSLEDQAAQLKRAVAFFSLQAA Sbjct: 481 QNAALVEQAAAAAKSLEDQAAQLKRAVAFFSLQAA 515 >ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 288/512 (56%), Positives = 372/512 (72%) Query: 1 MIKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAQQTQQMMDVPLKTERLVSQWNTL 60 +I N+ IG RL GFA++L FS+++A +G+WRL VAQ T++MM PLKTERL++ W T Sbjct: 3 IIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTN 62 Query: 61 LLIAIQRTTTVVKSRDPELEAFLAKEAAASSKESAQTLKDVEQLLTSEEEKKLFAAINAA 120 L+ I+RT + KS DP L + A E AASSK S + K VE LL++ EEK LF I Sbjct: 63 LVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGEL 122 Query: 121 RKQFLAIRDQIYAAKKEGDAAKVDQLYQQQYVGIANNTQGAMRSLLDFERARIDEISADI 180 RK +L+ RD+I AK G+ + ++ Q +V A Q MR L+DF+R +D+ + +I Sbjct: 123 RKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREI 182 Query: 181 QKDAASSQWQIFALEAVILACGIAFALLLTRSITRPVHAALAISQRVAAGDLTSRAQPMG 240 AA S+ I LE +IL GI FA LT IT+P+H A+ +S+ VA GDL+S Sbjct: 183 DAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTS 242 Query: 241 QDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEET 300 +DE GQL+ SL+ M++ L G+VS VR G D+I+ AS EIA GNLDLS+RTE+QA +L ET Sbjct: 243 RDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLAET 302 Query: 301 AASIEQLTSSVRTNSENAHQANDLVKSAASIAGQGGQVMQELIDTMGNINSSSRKIVDII 360 A+++E+L S+VR N++NA QA+ L SA+++A QGG V+ +++DTMG IN+SSRKIVDII Sbjct: 303 ASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDII 362 Query: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSASAAKEIKQLIDDSV 420 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSASAAKEIK+LI+DSV Sbjct: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSV 422 Query: 421 SKVDAGSELVERAGKTMQEVVGSVQGAHALVGDISTASREQAEGIHQVNQAVSQMDGVTQ 480 KVD GS LVE+AG TMQEVV SV+ +V +IS AS EQ GI Q+N A++QMD VTQ Sbjct: 423 GKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQ 482 Query: 481 QNAALVEQAAAAAKSLEDQAAQLKRAVAFFSL 512 QNAALVE+AAAAA S++ QA +L + V+ F L Sbjct: 483 QNAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 >ref|YP_002553209.1| methyl-accepting chemotaxis sensory transducer [Acidovorax ebreus TPSY] gb|ACM33209.1| methyl-accepting chemotaxis sensory transducer [Acidovorax ebreus TPSY] Length = 523 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 273/514 (53%), Positives = 367/514 (71%) Query: 2 IKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAQQTQQMMDVPLKTERLVSQWNTLL 61 ++N RIG+RL AGF ++++F+M++ VG+W+L+ VA T+Q++ VPL+ ERLV+ W ++ Sbjct: 1 MENFRIGTRLTAGFGLLILFAMLMLTVGVWQLQGVAGSTRQILSVPLQKERLVTDWYGVI 60 Query: 62 LIAIQRTTTVVKSRDPELEAFLAKEAAASSKESAQTLKDVEQLLTSEEEKKLFAAINAAR 121 +IQR T V +S D L A E AASSKE+ + +L++ EE+ LF ++ R Sbjct: 61 RASIQRATAVARSSDDSLTELFAAENAASSKETNERQAQFVKLISGSEEQALFDTLSGHR 120 Query: 122 KQFLAIRDQIYAAKKEGDAAKVDQLYQQQYVGIANNTQGAMRSLLDFERARIDEISADIQ 181 + ++ RD I AAKK G A +V L+++Q+V + ++ +L DF+RA ID DI Sbjct: 121 QAYIQARDSIIAAKKGGQAEQVTTLFERQFVPASRGYLESLAALRDFQRASIDRTGQDID 180 Query: 182 KDAASSQWQIFALEAVILACGIAFALLLTRSITRPVHAALAISQRVAAGDLTSRAQPMGQ 241 A +S W + + V+L GI A +LT SIT P+ A+ +Q VAAGDLT G+ Sbjct: 181 SSATASSWLMGGIGLVVLVAGIGVAWILTHSITAPLARAVQATQVVAAGDLTHAVHSSGR 240 Query: 242 DELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEETA 301 DE QL+ +LQ M++RL +V VR GADSIA AS EIA GN+DLS RTE+QA +LEETA Sbjct: 241 DEGAQLLQALQAMTDRLRTIVGEVRQGADSIAGASAEIAAGNMDLSRRTEQQASSLEETA 300 Query: 302 ASIEQLTSSVRTNSENAHQANDLVKSAASIAGQGGQVMQELIDTMGNINSSSRKIVDIIG 361 AS+E+LTS+VR N++NAHQAN L ++AA A QGGQVM +++ TM I++SSRKIVDIIG Sbjct: 301 ASLEELTSTVRQNADNAHQANQLARTAADQAQQGGQVMDDVMQTMRAIDASSRKIVDIIG 360 Query: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSASAAKEIKQLIDDSVS 421 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA RS+ AAKEIK LI SV Sbjct: 361 VIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSSEAAKEIKDLIGRSVD 420 Query: 422 KVDAGSELVERAGKTMQEVVGSVQGAHALVGDISTASREQAEGIHQVNQAVSQMDGVTQQ 481 V+AG++LV +AG ++Q+++ SV ALVG+IS ASREQ+ GI QVN AV+ MD TQQ Sbjct: 421 TVEAGNQLVAKAGTSIQDIIRSVDQVSALVGEISAASREQSSGIEQVNIAVAHMDQATQQ 480 Query: 482 NAALVEQAAAAAKSLEDQAAQLKRAVAFFSLQAA 515 NAALVE+A AA +SL+ QAAQ+ +AV F + ++ Sbjct: 481 NAALVEEATAATQSLQGQAAQVAQAVGVFRVDSS 514 >ref|ZP_04765383.1| methyl-accepting chemotaxis sensory transducer [Acidovorax delafieldii 2AN] gb|EER57813.1| methyl-accepting chemotaxis sensory transducer [Acidovorax delafieldii 2AN] Length = 527 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 268/511 (52%), Positives = 356/511 (69%) Query: 2 IKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAQQTQQMMDVPLKTERLVSQWNTLL 61 +KN++IG+RLG GFA+VL +++ G+WRL+TVAQ T M PL ER++S W + Sbjct: 1 MKNLKIGTRLGGGFALVLALMVLMTLFGLWRLQTVAQATNDMTQQPLAMERMISDWYRYV 60 Query: 62 LIAIQRTTTVVKSRDPELEAFLAKEAAASSKESAQTLKDVEQLLTSEEEKKLFAAINAAR 121 +RTT +VKS DP L F A++AA S++ES + +E LL++ EK+L+ I AR Sbjct: 61 YSGARRTTAIVKSTDPSLAGFFAEDAAMSTRESGKLQDRIEPLLSNPAEKELWVTIKKAR 120 Query: 122 KQFLAIRDQIYAAKKEGDAAKVDQLYQQQYVGIANNTQGAMRSLLDFERARIDEISADIQ 181 +L+ RDQ AK +G + ++ Q Y+ A ++ LLD +RA ID + DIQ Sbjct: 121 VTYLSSRDQAVKAKADGQLEEAERTLTQVYLPAAEKYMALIQQLLDLQRASIDATAKDIQ 180 Query: 182 KDAASSQWQIFALEAVILACGIAFALLLTRSITRPVHAALAISQRVAAGDLTSRAQPMGQ 241 A S+ + L + +A G A LT ITRP+ A+ +++ VA DLT+ + + Sbjct: 181 GVYAESRMWLMLLCVLAVAVGGVCAWWLTHGITRPLSEAVRVARAVADNDLTTTVEVHSR 240 Query: 242 DELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEETA 301 DE GQL+ +LQ M+ L VV VR G + IA AS +I GN DLS+RTE+QA +LEETA Sbjct: 241 DETGQLMEALQHMNTSLAQVVGRVRAGTEGIATASNQIDAGNQDLSSRTEQQASSLEETA 300 Query: 302 ASIEQLTSSVRTNSENAHQANDLVKSAASIAGQGGQVMQELIDTMGNINSSSRKIVDIIG 361 AS+E+LTS+VR N++NA QAN L SA+ +A QGGQV+ ++DTM IN+SSRKI DIIG Sbjct: 301 ASMEELTSTVRQNADNARQANQLASSASQVAMQGGQVVAHVVDTMSAINASSRKIADIIG 360 Query: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSASAAKEIKQLIDDSVS 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAK+IK LID+SV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDIKTLIDNSVG 420 Query: 422 KVDAGSELVERAGKTMQEVVGSVQGAHALVGDISTASREQAEGIHQVNQAVSQMDGVTQQ 481 KVD G++ V AGKTM +V SV+ ++ +I+ AS+EQ+ GI QV+QA+SQMD VTQQ Sbjct: 421 KVDEGTQQVAEAGKTMDAIVDSVKRVTDIMAEIAAASQEQSSGIDQVHQAISQMDQVTQQ 480 Query: 482 NAALVEQAAAAAKSLEDQAAQLKRAVAFFSL 512 NAALVE+AAAA SL+ QAAQL +AV+ F + Sbjct: 481 NAALVEEAAAATGSLKAQAAQLAQAVSVFRI 511 >ref|YP_002551663.1| methyl-accepting chemotaxis sensory transducer [Acidovorax ebreus TPSY] gb|ACM31663.1| methyl-accepting chemotaxis sensory transducer [Acidovorax ebreus TPSY] Length = 581 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 279/513 (54%), Positives = 358/513 (69%) Query: 2 IKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAQQTQQMMDVPLKTERLVSQWNTLL 61 +KN+ IG+RLG GFA+VL+ ++ A G+WRL+TVAQ T +M PL ER++S W + Sbjct: 1 MKNLSIGTRLGGGFALVLLLMALMTAFGVWRLQTVAQATNEMTQQPLAVERMISDWYRYV 60 Query: 62 LIAIQRTTTVVKSRDPELEAFLAKEAAASSKESAQTLKDVEQLLTSEEEKKLFAAINAAR 121 A +RT+ +VKS DP L F A + A S++ESA+ K +E LLTSEEEK L+A I AR Sbjct: 61 YSAARRTSAIVKSTDPSLGQFFAADTATSTRESAELQKRIETLLTSEEEKALWADIQKAR 120 Query: 122 KQFLAIRDQIYAAKKEGDAAKVDQLYQQQYVGIANNTQGAMRSLLDFERARIDEISADIQ 181 +L+ RDQ AK EG + ++L Q Y+ + ++ LLD +R+RID + I Sbjct: 121 VTYLSSRDQAVKAKAEGQLEEAERLLTQVYLPATDQYVALIQRLLDMQRSRIDATAQGIN 180 Query: 182 KDAASSQWQIFALEAVILACGIAFALLLTRSITRPVHAALAISQRVAAGDLTSRAQPMGQ 241 S+ + L + L G A LTR ITRP+ A+ +++ VAA DLTSR Q + Sbjct: 181 VTYGQSRLWLIVLGVLGLGAGALCAWWLTRGITRPLAQAVQVARAVAANDLTSRVQVDSR 240 Query: 242 DELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEETA 301 DE GQL+ +LQ M+ L VV+ VR G D IA AS ++ GN DLS+RTEEQA +L+ETA Sbjct: 241 DETGQLLQALQEMNASLSQVVARVRSGTDGIATASSQLDAGNQDLSSRTEEQASSLQETA 300 Query: 302 ASIEQLTSSVRTNSENAHQANDLVKSAASIAGQGGQVMQELIDTMGNINSSSRKIVDIIG 361 AS+EQLTS+VR N++NA QAN L SAA A QGGQV+ ++ TMG IN+SSRKI DIIG Sbjct: 301 ASMEQLTSTVRQNADNARQANQLASSAAQTATQGGQVVAGVVQTMGAINASSRKISDIIG 360 Query: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSASAAKEIKQLIDDSVS 421 VID IAFQTNILALNAAVEAARAGEQGRGFAVVA EVRALAQRSA+AAK+IK LI DSV+ Sbjct: 361 VIDSIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRALAQRSAAAAKDIKGLIGDSVA 420 Query: 422 KVDAGSELVERAGKTMQEVVGSVQGAHALVGDISTASREQAEGIHQVNQAVSQMDGVTQQ 481 KV+ GS VE AG+TM +V SVQ LV +I+ AS+EQ+ GI QV+QA++QMD VTQQ Sbjct: 421 KVEEGSHQVEEAGRTMDAIVQSVQRVSDLVAEITAASQEQSAGIEQVHQAITQMDQVTQQ 480 Query: 482 NAALVEQAAAAAKSLEDQAAQLKRAVAFFSLQA 514 NAALVE+A AA SL+ QA QL +AV+ F ++ Sbjct: 481 NAALVEEATAATGSLKAQAGQLAQAVSVFRVEG 513