BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1096.p         (160 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774742.1| hypothetical protein Hsero_1318 [Herbaspiril...   161   2e-38
ref|YP_258818.1| hypothetical protein PFL_1692 [Pseudomonas fluo...    89   3e-16
ref|YP_347322.1| hypothetical protein Pfl01_1590 [Pseudomonas fl...    88   4e-16
ref|YP_002871431.1| hypothetical protein PFLU1795 [Pseudomonas f...    82   2e-14
ref|YP_001888666.1| hypothetical protein Bphyt_4932 [Burkholderi...    80   8e-14

>ref|YP_003774742.1| hypothetical protein Hsero_1318 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62834.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 90/109 (82%), Positives = 100/109 (91%)

Query: 33  MINTTLPRLLRGALIPALLASYLIGSSAMAQTPPQVGIRGSIVSVGKDQLVVKTNKGAEQ 92
           M+   LP++ RGALIPALLAS+L+   A+AQTP  VGIRG+IVSVGKDQLVVK+NKGAEQ
Sbjct: 1   MMKKLLPQVFRGALIPALLASHLLVPVALAQTPALVGIRGTIVSVGKDQLVVKSNKGAEQ 60

Query: 93  NVALDKDTRVAAISIADINDIKPGSYIGAAGIPQPDGSQKALEVHVFPP 141
           NVALDKDTRVAAISIA+I+DIKPGSYIGAAGIPQPDGSQKALEVHVFPP
Sbjct: 61  NVALDKDTRVAAISIANISDIKPGSYIGAAGIPQPDGSQKALEVHVFPP 109


>ref|YP_258818.1| hypothetical protein PFL_1692 [Pseudomonas fluorescens Pf-5]
 gb|AAY90987.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 209

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/111 (47%), Positives = 74/111 (66%), Gaps = 5/111 (4%)

Query: 34  INTTLPRLLRGALIPALLASYLIGSS-AMAQTPP--QVGIRGSIVSVGKDQLVVKTNKGA 90
           +N +LP LL    +  L  ++L+GS+ A+AQ  P  ++G+RG I  VG D + V  N G 
Sbjct: 1   MNRSLPGLL--CNLQCLALAFLLGSTTALAQDAPGMRIGVRGEITGVGGDVVRVHVNSGE 58

Query: 91  EQNVALDKDTRVAAISIADINDIKPGSYIGAAGIPQPDGSQKALEVHVFPP 141
             +V L   T+V A+++A+I DIKPGSYIG+A +P  DG+ KALEVHVFPP
Sbjct: 59  NVSVELTPQTQVRAVTLANIEDIKPGSYIGSAAMPMADGTLKALEVHVFPP 109


>ref|YP_347322.1| hypothetical protein Pfl01_1590 [Pseudomonas fluorescens Pf0-1]
 gb|ABA73333.1| putative exported protein [Pseudomonas fluorescens Pf0-1]
          Length = 206

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 72/105 (68%), Gaps = 5/105 (4%)

Query: 40  RLLRGALIPALLASYLIGSSAM--AQTPP-QVGIRGSIVSVGKDQLVVKTNKGAEQNVAL 96
           +LLR     AL++  L+G++A+  A+ P  ++G+RG I  VG D L +  N G    V L
Sbjct: 4   QLLRHTTTIALIS--LLGATAVQAAEAPGMRMGVRGEITGVGPDSLKIHVNTGENVVVQL 61

Query: 97  DKDTRVAAISIADINDIKPGSYIGAAGIPQPDGSQKALEVHVFPP 141
             DT+V A+++A+I DIKPGSYIG+A IPQ DG+ KALEVHVFPP
Sbjct: 62  TPDTKVRAVTLANIEDIKPGSYIGSAAIPQEDGTLKALEVHVFPP 106


>ref|YP_002871431.1| hypothetical protein PFLU1795 [Pseudomonas fluorescens SBW25]
 emb|CAY48042.1| putative exported protein [Pseudomonas fluorescens SBW25]
          Length = 204

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/100 (46%), Positives = 65/100 (65%)

Query: 42  LRGALIPALLASYLIGSSAMAQTPPQVGIRGSIVSVGKDQLVVKTNKGAEQNVALDKDTR 101
           L   L+ + LA+ +    A A   P+VG+RG+I ++  D + VK N G +  V L   T+
Sbjct: 5   LNKMLLASTLAAAMAVGLAQAADAPRVGVRGAITAMEGDAMHVKVNSGEDVIVHLTPATQ 64

Query: 102 VAAISIADINDIKPGSYIGAAGIPQPDGSQKALEVHVFPP 141
           V A+++A I++IKPGSYIG+A +P  DGS  ALEVHVFPP
Sbjct: 65  VRAVTLAKIDEIKPGSYIGSAAMPNADGSLTALEVHVFPP 104


>ref|YP_001888666.1| hypothetical protein Bphyt_4932 [Burkholderia phytofirmans PsJN]
 gb|ACD19296.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 210

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/72 (54%), Positives = 52/72 (72%)

Query: 69  GIRGSIVSVGKDQLVVKTNKGAEQNVALDKDTRVAAISIADINDIKPGSYIGAAGIPQPD 128
           G+RG++ S+  DQL + T  G + +V L KDT +  + +A+INDIKP SY+G A IPQ D
Sbjct: 38  GVRGTVTSLSGDQLKIHTRDGKDVDVKLAKDTPIRGVVLANINDIKPDSYVGTAAIPQAD 97

Query: 129 GSQKALEVHVFP 140
           G+ KALEVHVFP
Sbjct: 98  GTLKALEVHVFP 109