BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1095.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774741.1| hypothetical protein Hsero_1317 [Herbaspiril...   236   1e-60
ref|ZP_03699408.1| conserved hypothetical protein [Lutiella nitr...    87   1e-15
ref|YP_003979535.1| hypothetical protein AXYL_03500 [Achromobact...    86   3e-15
ref|YP_004848487.1| hypothetical protein NH8B_3311 [Pseudogulben...    84   7e-15
ref|YP_001892934.1| conserved hypothetical protein [Ralstonia pi...    83   1e-14

>ref|YP_003774741.1| hypothetical protein Hsero_1317 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62833.1| exported protein [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score =  236 bits (601), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 121/137 (88%), Positives = 131/137 (95%)

Query: 1   MDINKITAISAIVFGLAGMAAPLTHAQDMQGTVAYMNGGIGAGEQAKLREAAKDYNLRLL 60
           MDINKITAISAIVFGLAG+AAPLT AQ+MQG+VAYMNGGIGAGEQ KLREAAKDYNLRLL
Sbjct: 1   MDINKITAISAIVFGLAGLAAPLTQAQEMQGSVAYMNGGIGAGEQHKLREAAKDYNLRLL 60

Query: 61  FSEAKDGAYVSNVKLDVADLHGKSVFSLATAGPMTNLKLPKGEYEITAVYNGVKKTTKVS 120
           FSEAKDGA+VSNVKL V+DLHGKSVF+L +AGPMTNLKLP GEYE+TA+YNGVKKT+KVS
Sbjct: 61  FSEAKDGAFVSNVKLTVSDLHGKSVFTLPSAGPMTNLKLPSGEYEVTAIYNGVKKTSKVS 120

Query: 121 VGEKPVSLSFNWAHQDN 137
           VGEKP SLSFNWAHQDN
Sbjct: 121 VGEKPASLSFNWAHQDN 137


>ref|ZP_03699408.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
 gb|EEG07588.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
          Length = 137

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 65/103 (63%)

Query: 30  QGTVAYMNGGIGAGEQAKLREAAKDYNLRLLFSEAKDGAYVSNVKLDVADLHGKSVFSLA 89
           QG V++++GGIG  E A + EA +DYNL+LLF+    G Y+S+V + V + HG +V    
Sbjct: 35  QGEVSFVSGGIGDDELAAMHEARRDYNLQLLFAAKGSGEYLSSVAVVVKNAHGDTVLDTV 94

Query: 90  TAGPMTNLKLPKGEYEITAVYNGVKKTTKVSVGEKPVSLSFNW 132
             GP+   KLP+G+Y+++A Y    ++ KV +G    SLSF W
Sbjct: 95  ADGPLLYAKLPRGQYQVSARYQEQAQSRKVRLGGGATSLSFYW 137


>ref|YP_003979535.1| hypothetical protein AXYL_03500 [Achromobacter xylosoxidans A8]
 gb|ADP16820.1| hypothetical protein AXYL_03500 [Achromobacter xylosoxidans A8]
          Length = 144

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/127 (40%), Positives = 72/127 (56%), Gaps = 8/127 (6%)

Query: 3   INKITAISAIVFGLAGMAAPLTHAQ------DMQGTVAYMNGGIGAGEQAKLREAAKDYN 56
           I + T  +A+  G    A  L+ AQ        QG+V Y++GGIG  E   ++ AAKDY 
Sbjct: 5   IERCTMAAAMALGSMAFAGILSTAQAGLPPVQQQGSVQYVSGGIGLDESEAMKAAAKDYP 64

Query: 57  LRLLFSEAKDGA--YVSNVKLDVADLHGKSVFSLATAGPMTNLKLPKGEYEITAVYNGVK 114
           L L F+  +DG   YV+NV + + D HGKSV  +   GP   +KLP G Y+I+A YNG  
Sbjct: 65  LALTFAAQRDGKADYVANVAVTITDAHGKSVLQVTAEGPYMLVKLPAGNYKISATYNGQA 124

Query: 115 KTTKVSV 121
           +  +VSV
Sbjct: 125 QQREVSV 131


>ref|YP_004848487.1| hypothetical protein NH8B_3311 [Pseudogulbenkiania sp. NH8B]
 dbj|BAK78073.1| hypothetical protein NH8B_3311 [Pseudogulbenkiania sp. NH8B]
          Length = 137

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/103 (40%), Positives = 63/103 (61%)

Query: 30  QGTVAYMNGGIGAGEQAKLREAAKDYNLRLLFSEAKDGAYVSNVKLDVADLHGKSVFSLA 89
           QG  ++++GGIG  E A + EA +DYNL+LLF+    G Y+S+V + V + HG +V    
Sbjct: 35  QGEASFVSGGIGDDELAAMHEARRDYNLQLLFAAKGSGEYLSSVAVVVKNAHGDTVLDTV 94

Query: 90  TAGPMTNLKLPKGEYEITAVYNGVKKTTKVSVGEKPVSLSFNW 132
             GP+   KLP+G+Y+++A Y    +  KV +G    SLSF W
Sbjct: 95  ADGPLLYAKLPRGQYQVSARYQEQVQNRKVRLGGGATSLSFYW 137


>ref|YP_001892934.1| conserved hypothetical protein [Ralstonia pickettii 12J]
 ref|YP_002984459.1| hypothetical protein Rpic12D_4546 [Ralstonia pickettii 12D]
 gb|ACD29507.1| conserved hypothetical protein [Ralstonia pickettii 12J]
 gb|ACS65787.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 167

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 60/97 (61%)

Query: 30  QGTVAYMNGGIGAGEQAKLREAAKDYNLRLLFSEAKDGAYVSNVKLDVADLHGKSVFSLA 89
           Q  +AY++GG+G+ E+  +R  A+ +N+RL    A+    +S+V + VAD  GK    + 
Sbjct: 39  QNEIAYVSGGVGSDERDAMRAMARRFNVRLNVVSARTSEALSDVDVSVADDRGKLRLRVR 98

Query: 90  TAGPMTNLKLPKGEYEITAVYNGVKKTTKVSVGEKPV 126
           T GP+  ++LP+G Y+ITA Y G  +T  VS G +PV
Sbjct: 99  TEGPLLYMRLPRGHYQITAAYRGAMQTVNVSAGAQPV 135