BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1094.p (579 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002546709.1| oxidoreductase [Agrobacterium radiobacter K8... 657 0.0 gb|EGH51897.1| glucose-methanol-choline oxidoreductase [Pseudomo... 617 e-174 ref|ZP_08184265.1| choline dehydrogenase-like flavoprotein [Xant... 613 e-173 ref|ZP_06968636.1| glucose-methanol-choline oxidoreductase [Kted... 598 e-169 ref|YP_004182024.1| glucose-methanol-choline oxidoreductase [Ter... 597 e-168 >ref|YP_002546709.1| oxidoreductase [Agrobacterium radiobacter K84] gb|ACM31245.1| oxidoreductase [Agrobacterium radiobacter K84] Length = 595 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 318/566 (56%), Positives = 407/566 (71%) Query: 11 LAHGDRINALEQALMHGKIDRRHFMKLAAALGLGTSAIESMAQQAEAIATNQAERASTLQ 70 A GDR+N LE AL HGK+ RR FM+LA A G +A +MAQ A Q A L+ Sbjct: 28 FARGDRLNTLEAALYHGKVGRRQFMQLAMAAGASLTAARTMAQDGGDAAITQLYNAHNLK 87 Query: 71 DQYDYIVVGAGSSGCVIASRLSENPDLSVLLLEAGGSDDAPSILDPGVWFTNLGTEREWG 130 YDYIVVG+GS G V+A RL+ D VLLLEAG +D ++L+PG+W TN+ +ER+WG Sbjct: 88 KAYDYIVVGSGSGGAVVAGRLATETDAEVLLLEAGSTDQLNAVLNPGLWPTNIRSERDWG 147 Query: 131 DKSLPQRHLHQRTLSLAMGRAIGGGSSINVMAYARGHKSDYDHWAAEAGDAAWNYDHVLA 190 + P ++ R L L MG+ +GGGSS+N M +ARGH++D+D WA+E GD +W+Y VL Sbjct: 148 YTADPADSVNGRALILPMGKVVGGGSSVNAMVWARGHRNDFDFWASETGDDSWSYASVLE 207 Query: 191 IYKRIEDWQGAPDPAYRGQGGNVWVQPAKDPNPIAPAMKRAAAAIGIPSFEDHNGAMMEG 250 IYKRIEDWQG PD RG GG +W++PA+DPNPIAPA AA ++GIP+FED NG MMEG Sbjct: 208 IYKRIEDWQGKPDTKRRGDGGRLWIEPARDPNPIAPAFLSAAESVGIPTFEDMNGEMMEG 267 Query: 251 PGGCAIANTSIKDGRRRNMASHYLHPVMQRKNLTVLTRAEVQRLTLSGKRATGVELNWQG 310 GG AIAN I+DGRR N+A YL+ ++R NLT+LT AEV LT+ G R TG+ + G Sbjct: 268 AGGAAIANLRIRDGRRINLAHDYLYAALKRPNLTLLTGAEVLSLTVIGSRVTGLTFSRNG 327 Query: 311 RQRRIGARREVILSAGALNSPKLLMLSGIGDETMLRRAGVPVRHTLAGVGRNFMDHILLG 370 + A+ ++LSAGA+N+PKLLMLSGIGD+T L + G+ L GVGRNF DH+L+ Sbjct: 328 VTHAVEAKTRMLLSAGAINTPKLLMLSGIGDDTELSKHGIKTAVKLPGVGRNFQDHVLVA 387 Query: 371 GCLWEYNTPEAPRNNLAECTFFWKSDSKLASPDLQPFQIEIPFTSEATAKQYQVPQAAWS 430 GCLWEY P NN+AE T FWKSD L +PDLQPFQIE+PF SE T+ QY P +W+ Sbjct: 388 GCLWEYKVPLPSANNVAEATLFWKSDGSLDTPDLQPFQIEVPFASEVTSPQYNPPAGSWT 447 Query: 431 IAPGLVQPKSRGHLELQSADPRDRLKIHANFLSDPADVKALVRAVELCREIGNQAELRAY 490 IAPGLV+PKSRG + L SADPR +I A F+SDPAD+KA++R +ELCREIGN ++ + Sbjct: 448 IAPGLVRPKSRGRVYLSSADPRAMARIDARFMSDPADLKAILRGIELCREIGNSEAMKPF 507 Query: 491 AKREVMPGPLSPKQMESFVRDAALTYWHETGTCKMGRDQMAVVDSQLRVYGIDGLRVADG 550 KRE+MPG L M +F RDAA TY+HE+ TCKMGRD+++VVD +L V G++GL +AD Sbjct: 508 VKREIMPGALDKTAMANFARDAAGTYFHESCTCKMGRDELSVVDGRLSVRGVEGLSIADA 567 Query: 551 SIMPRVTTGNTMAPCMIIGERMAEIL 576 S+MPRV+TGNTMA +IIGERMA+IL Sbjct: 568 SVMPRVSTGNTMASTVIIGERMADIL 593 >gb|EGH51897.1| glucose-methanol-choline oxidoreductase [Pseudomonas syringae Cit 7] Length = 539 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 296/525 (56%), Positives = 381/525 (72%) Query: 52 AQQAEAIATNQAERASTLQDQYDYIVVGAGSSGCVIASRLSENPDLSVLLLEAGGSDDAP 111 A A + NQ ++L+ YDYIV G+G+SG V+A RL+ENPD+SVLLLEAGG+DD P Sbjct: 11 ADFARRVEDNQRRLKASLKGAYDYIVCGSGTSGSVVARRLAENPDVSVLLLEAGGTDDVP 70 Query: 112 SILDPGVWFTNLGTEREWGDKSLPQRHLHQRTLSLAMGRAIGGGSSINVMAYARGHKSDY 171 S+ D +WFTNLG+ER+W ++ P HL+ R + L+MG+ +GGGSSINVM +ARGH SD+ Sbjct: 71 SVTDASIWFTNLGSERDWQFQAQPNPHLNNRAIPLSMGKVLGGGSSINVMVWARGHSSDW 130 Query: 172 DHWAAEAGDAAWNYDHVLAIYKRIEDWQGAPDPAYRGQGGNVWVQPAKDPNPIAPAMKRA 231 DH+A+E+GD AWNY LA Y+RIE+WQG PD RG GG V+VQPA DPNPIAPAM A Sbjct: 131 DHFASESGDPAWNYQSTLATYRRIENWQGTPDALRRGTGGLVFVQPAPDPNPIAPAMLGA 190 Query: 232 AAAIGIPSFEDHNGAMMEGPGGCAIANTSIKDGRRRNMASHYLHPVMQRKNLTVLTRAEV 291 A +G+P F+D NGAMMEG GG A+ N +++GRRR++ Y++P+M + NLTVL V Sbjct: 191 VAELGMPVFDDQNGAMMEGAGGAALVNMCLENGRRRSIFRSYVYPLMAQPNLTVLAHTHV 250 Query: 292 QRLTLSGKRATGVELNWQGRQRRIGARREVILSAGALNSPKLLMLSGIGDETMLRRAGVP 351 R+ L GKRA GVE+ +GR AR EV+LS GA+N+PK+LMLSGIGD L R G+ Sbjct: 251 LRVLLEGKRAVGVEVIHEGRIMSFRAREEVVLSLGAINTPKVLMLSGIGDAQQLVRHGIA 310 Query: 352 VRHTLAGVGRNFMDHILLGGCLWEYNTPEAPRNNLAECTFFWKSDSKLASPDLQPFQIEI 411 L GVG+N+ DHI++ GC+WEY A RNN E TFFWKSD L PD+Q F E+ Sbjct: 311 PLENLPGVGQNYQDHIMVSGCIWEYEQAHAARNNAGESTFFWKSDPALDVPDIQTFLAEM 370 Query: 412 PFTSEATAKQYQVPQAAWSIAPGLVQPKSRGHLELQSADPRDRLKIHANFLSDPADVKAL 471 P S + P +AWS+ PGLV+PKSRG + L RD L+I + L++P D++AL Sbjct: 371 PIASFEAQATFNPPASAWSLLPGLVRPKSRGSITLSGGGHRDALRIDSGALAEPEDLQAL 430 Query: 472 VRAVELCREIGNQAELRAYAKREVMPGPLSPKQMESFVRDAALTYWHETGTCKMGRDQMA 531 VRAVE CREIGN + LR + +REVMPG ++ K +ESFVR+ A T WH++GT +MG D+++ Sbjct: 431 VRAVEFCREIGNSSTLRPFVRREVMPGKMNRKDLESFVRNTASTVWHQSGTARMGIDELS 490 Query: 532 VVDSQLRVYGIDGLRVADGSIMPRVTTGNTMAPCMIIGERMAEIL 576 VVD+QLRVYGID LRVAD SIMPRVTTGNTMAPC+IIGER+ +L Sbjct: 491 VVDAQLRVYGIDNLRVADASIMPRVTTGNTMAPCVIIGERLGSLL 535 >ref|ZP_08184265.1| choline dehydrogenase-like flavoprotein [Xanthomonas gardneri ATCC 19865] ref|ZP_08185744.1| choline dehydrogenase-like flavoprotein [Xanthomonas gardneri ATCC 19865] gb|EGD16609.1| choline dehydrogenase-like flavoprotein [Xanthomonas gardneri ATCC 19865] gb|EGD18101.1| choline dehydrogenase-like flavoprotein [Xanthomonas gardneri ATCC 19865] Length = 537 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 300/525 (57%), Positives = 385/525 (73%) Query: 52 AQQAEAIATNQAERASTLQDQYDYIVVGAGSSGCVIASRLSENPDLSVLLLEAGGSDDAP 111 A+ + + NQ + L +YDYI+ G+G+SG V+A RL++NPD++VLLLEAGGSDD Sbjct: 11 AEFSRRVDDNQRHLRNNLAAEYDYIICGSGTSGSVVARRLAQNPDITVLLLEAGGSDDVA 70 Query: 112 SILDPGVWFTNLGTEREWGDKSLPQRHLHQRTLSLAMGRAIGGGSSINVMAYARGHKSDY 171 S+ D VWFTNLG+ER+W ++ P HL+ R + L+MG+ +GGGSSINVM +ARGH+SD+ Sbjct: 71 SVSDASVWFTNLGSERDWQFQAQPNPHLNDRAIPLSMGKVLGGGSSINVMVWARGHRSDW 130 Query: 172 DHWAAEAGDAAWNYDHVLAIYKRIEDWQGAPDPAYRGQGGNVWVQPAKDPNPIAPAMKRA 231 D++A+E+GDAAWNY LA Y+RIEDW+G PD RG GG V VQPA DPNP+APAM A Sbjct: 131 DYFASESGDAAWNYAATLATYRRIEDWRGEPDAERRGTGGLVLVQPAPDPNPVAPAMLSA 190 Query: 232 AAAIGIPSFEDHNGAMMEGPGGCAIANTSIKDGRRRNMASHYLHPVMQRKNLTVLTRAEV 291 AA +GIP+F+D NGA+ME G AIAN I++G RR++ Y++P+M + NLTVLT A V Sbjct: 191 AAHLGIPTFDDQNGALMEAGSGAAIANLCIENGHRRSIFRRYVYPLMAQPNLTVLTHAHV 250 Query: 292 QRLTLSGKRATGVELNWQGRQRRIGARREVILSAGALNSPKLLMLSGIGDETMLRRAGVP 351 R+ L GKRA GVE+ G+ RI AR+EV+LSAGAL++PK+LM SGIG+ L G+ Sbjct: 251 LRVVLEGKRAVGVEVLHAGKVGRIKARQEVVLSAGALHTPKILMHSGIGEAGHLLEHGIE 310 Query: 352 VRHTLAGVGRNFMDHILLGGCLWEYNTPEAPRNNLAECTFFWKSDSKLASPDLQPFQIEI 411 V L GVG+N+ DH+++ GC+WEY APRNN E TFF KS + +PDLQ F EI Sbjct: 311 VVQDLPGVGQNYQDHMMVSGCIWEYEQAYAPRNNAGESTFFCKSHPDMDTPDLQTFLAEI 370 Query: 412 PFTSEATAKQYQVPQAAWSIAPGLVQPKSRGHLELQSADPRDRLKIHANFLSDPADVKAL 471 P S + P AAWS+ PGLV+PKSRG + L +DP D LKI LS P DV+AL Sbjct: 371 PIASAEAQAMFNPPAAAWSLLPGLVRPKSRGSITLSGSDPMDPLKIDTGALSAPEDVQAL 430 Query: 472 VRAVELCREIGNQAELRAYAKREVMPGPLSPKQMESFVRDAALTYWHETGTCKMGRDQMA 531 VR VE+CR+IGN A +R + KREVMPG L K +E+FVR+ A T WH++ T KMGRD M+ Sbjct: 431 VRGVEICRDIGNSASMRPFVKREVMPGALHGKGLENFVRNTASTVWHQSCTAKMGRDAMS 490 Query: 532 VVDSQLRVYGIDGLRVADGSIMPRVTTGNTMAPCMIIGERMAEIL 576 VVD+QLRVYGIDGLR+AD SIMPRVTTGNTMAPC+IIGER+ ++L Sbjct: 491 VVDAQLRVYGIDGLRIADASIMPRVTTGNTMAPCVIIGERLGKLL 535 >ref|ZP_06968636.1| glucose-methanol-choline oxidoreductase [Ktedonobacter racemifer DSM 44963] gb|EFH86176.1| glucose-methanol-choline oxidoreductase [Ktedonobacter racemifer DSM 44963] Length = 570 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 306/536 (57%), Positives = 391/536 (72%), Gaps = 4/536 (0%) Query: 45 TSAIESMAQQAEAIAT---NQAERASTLQDQYDYIVVGAGSSGCVIASRLSENPDLSVLL 101 TS ES Q E A NQ++ S L+ QYD+IV G+GSSG V+ASRL+ENPD+SVLL Sbjct: 30 TSHFESSIQAEEFAARVRLNQSKLRSQLKSQYDFIVCGSGSSGSVVASRLAENPDVSVLL 89 Query: 102 LEAGGSDDAPSILDPGVWFTNLGTEREWGDKSLPQRHLHQRTLSLAMGRAIGGGSSINVM 161 LEAGG+D+AP ++D W NLG+ER+W ++ P ++ R++ L+MG+ +GGGSSINVM Sbjct: 90 LEAGGNDEAPEVMDADKWPFNLGSERDWSFQAQPSSLVNGRSVPLSMGKVLGGGSSINVM 149 Query: 162 AYARGHKSDYDHWAAEAGDAAWNYDHVLAIYKRIEDWQGAPDPAYRGQGGNVWVQPAKDP 221 +ARGHKSD+D +A+EAGD AWNY+ VL IY+RIEDW GAPDP YRG GG V+V+PA DP Sbjct: 150 VWARGHKSDWDFFASEAGDPAWNYESVLQIYRRIEDWHGAPDPQYRGTGGPVFVEPAPDP 209 Query: 222 NPIAPAMKRAAAAIGIPSFEDHNGAMMEGPGGCAIANTSIKDGRRRNMASHYLHPVMQRK 281 NPIAPAM A +IGIP FE+ NG MMEG GG +I + + G+R+++ Y +P+M R Sbjct: 210 NPIAPAMLEGAQSIGIPIFENQNGRMMEGDGGASIIDVRARGGKRQSVFRSYTYPLMDRP 269 Query: 282 NLTVLTRAEVQRLTLSGKRATGVELNWQGRQRRIGARREVILSAGALNSPKLLMLSGIGD 341 NLTVLT A V RLT GKRATGVE+ + G+ RI A EV+LS GA+ +PK+LM SGIGD Sbjct: 270 NLTVLTHALVTRLTFEGKRATGVEIAYNGKIHRISAGTEVVLSLGAIQTPKVLMQSGIGD 329 Query: 342 ETMLRRAGVPVRHTLAGVGRNFMDHILLGGCLWEYNTPEAPRNNLAECTFFWKSDSKLAS 401 + L+R G+PV L GVG+NF DH C+WEY PRN +AE TFFWKS + L S Sbjct: 330 QAELQRFGIPVIQHLPGVGQNFQDHPAF-DCVWEYEEALPPRNTMAEATFFWKSAADLES 388 Query: 402 PDLQPFQIEIPFTSEATAKQYQVPQAAWSIAPGLVQPKSRGHLELQSADPRDRLKIHANF 461 PD+Q E+P +S + ++ +P W++ G+V+PKSRG+L L DP D ++I ANF Sbjct: 389 PDIQTCLAEVPKSSAENSARFGMPAHGWTLFGGIVRPKSRGYLRLTGPDPSDPVEIEANF 448 Query: 462 LSDPADVKALVRAVELCREIGNQAELRAYAKREVMPGPLSPKQMESFVRDAALTYWHETG 521 LS P D+KA + VELCREIGN A LR +++REVMPG L ++E F+RDA +TYWHET Sbjct: 449 LSHPDDLKAAIACVELCREIGNSAALRPFSRREVMPGNLKEAELERFIRDATMTYWHETC 508 Query: 522 TCKMGRDQMAVVDSQLRVYGIDGLRVADGSIMPRVTTGNTMAPCMIIGERMAEILK 577 T KMGRD M+VVDS LRVYGI LR+ADGSIMPRVTTGNT APC++IGER AEI++ Sbjct: 509 TAKMGRDAMSVVDSHLRVYGITNLRIADGSIMPRVTTGNTQAPCIVIGERAAEIIQ 564 >ref|YP_004182024.1| glucose-methanol-choline oxidoreductase [Terriglobus saanensis SP1PR4] gb|ADV82030.1| glucose-methanol-choline oxidoreductase [Terriglobus saanensis SP1PR4] Length = 545 Score = 597 bits (1539), Expect = e-168, Method: Composition-based stats. Identities = 302/533 (56%), Positives = 379/533 (71%), Gaps = 1/533 (0%) Query: 46 SAIESMAQQAEAIATNQAERASTLQDQYDYIVVGAGSSGCVIASRLSENPDLSVLLLEAG 105 +A S A E + +NQ + + L+ YD+IV G+GSSG V+A RL+EN VLLLEAG Sbjct: 10 AANASDAAFVEKVRSNQLKLSQDLRASYDFIVCGSGSSGAVVARRLAENTAARVLLLEAG 69 Query: 106 GSDDAPSILDPGVWFTNLGTEREWGDKSLPQRHLHQRTLSLAMGRAIGGGSSINVMAYAR 165 GSDD P+I +P +WFTNLG+ER+WG ++ P L R +SL MG+ +GGGSSIN+MA+AR Sbjct: 70 GSDDLPNITEPHLWFTNLGSERDWGFQARPNPDLKDRVVSLNMGKVLGGGSSINLMAWAR 129 Query: 166 GHKSDYDHWAAEAGDAAWNYDHVLAIYKRIEDWQGAPDPAYRGQGGNVWVQPAKDPNPIA 225 GHK+D+D++A EA D AWNY VL IY+R+EDW G PDP +RG GG V+V DPNPIA Sbjct: 130 GHKNDWDYFAQEAADPAWNYASVLEIYRRVEDWHGTPDPQHRGSGGPVFVGQGPDPNPIA 189 Query: 226 PAMKRAAAAIGIPSFEDHNGAMMEGPGGCAIANTSIKDGRRRNMASHYLHPVMQRKNLTV 285 PAM AA +GIP+F + NG MMEG GG +I + I DGRR ++ Y P M R NLTV Sbjct: 190 PAMLEAARLLGIPTFANQNGEMMEGEGGGSITDVRIHDGRRLSVFRSYTFPYMDRPNLTV 249 Query: 286 LTRAEVQRLTLSGKRATGVELNWQGRQRRIGARREVILSAGALNSPKLLMLSGIGDETML 345 LT A V RL GK+ +GVE+ + RI A EV+LS GA+N+PK+LM SGIGDE L Sbjct: 250 LTDALVTRLIFDGKKVSGVEVAIGNQVHRIAADSEVVLSLGAINTPKVLMQSGIGDEAEL 309 Query: 346 RRAGVPVRHTLAGVGRNFMDHILLGGCLWEYNTPEAPRNNLAECTFFWKSDSKLASPDLQ 405 +R G+PV L GVG+NF DH ++ C+WEY P APR+N +E T FWKSD L +PDLQ Sbjct: 310 KRLGIPVVQHLPGVGQNFQDHCMVASCMWEYEEPLAPRSNASEATLFWKSDPNLDTPDLQ 369 Query: 406 PFQIEIPFTSEATAKQYQVPQAAWSIAPGLVQPKSRGHLELQSADPRDRLKIHANFLSDP 465 QIE+PFTS TAK P AW I PGLV+PKSRG L L +P D ++I AN LS P Sbjct: 370 IAQIEVPFTSPETAK-LNPPAGAWGICPGLVRPKSRGRLHLTGPNPHDPIEIEANTLSHP 428 Query: 466 ADVKALVRAVELCREIGNQAELRAYAKREVMPGPLSPKQMESFVRDAALTYWHETGTCKM 525 D++A++R VEL REIGN A LRA+ KREVMPG L +E F+R ++YWH+T T KM Sbjct: 429 DDLEAMLRCVELSREIGNSAPLRAFVKREVMPGKLKGAALEDFIRSGIVSYWHQTCTAKM 488 Query: 526 GRDQMAVVDSQLRVYGIDGLRVADGSIMPRVTTGNTMAPCMIIGERMAEILKQ 578 GRD+M+VVD L+VYGI+ LR+ADGSIMPRVT GNTMAPC++IGER EILK+ Sbjct: 489 GRDEMSVVDGNLKVYGIEKLRIADGSIMPRVTAGNTMAPCVVIGERAGEILKK 541