BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1089.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002907856.1| GntR family transcriptional regulator [Burkh... 211 8e-53 ref|YP_002547278.1| transcriptional regulator GntR family [Agrob... 201 6e-50 ref|YP_001418811.1| GntR domain-containing protein [Xanthobacter... 188 5e-46 ref|YP_003929962.1| L-lactate dehydrogenase operon regulatory pr... 166 2e-39 ref|ZP_08206981.1| transcriptional regulator GntR family [Novosp... 165 6e-39 >ref|YP_002907856.1| GntR family transcriptional regulator [Burkholderia glumae BGR1] gb|ACR30621.1| GntR family transcriptional regulator [Burkholderia glumae BGR1] Length = 243 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 135/231 (58%), Positives = 172/231 (74%), Gaps = 3/231 (1%) Query: 13 LIARQALAPGQKLPSERTLAAEFGVSRSSLREAIGVLVSRGVLVARHGGGTFMADDEQAA 72 LI + L PG ++P+ER LAA+ GVSRSSLREAI L+SRG LV+RHG GTF+A + A Sbjct: 2 LIDSRHLKPGDRVPAERDLAADLGVSRSSLREAIHQLISRGRLVSRHGQGTFVAAPDAA- 60 Query: 73 LTDPIAEALQPLAPLARSDAGYWKDVAEIRFSLEGDAAYFAALRASDDDKRRLQQAYLAV 132 +P+ AL P+APLARS+ GYW DV EIR SLEG+AA+FAALRA+ DDK L AY A Sbjct: 61 --EPLRAALLPIAPLARSETGYWADVMEIRRSLEGEAAFFAALRANADDKMLLTAAYRAA 118 Query: 133 STAPLDDLAAQARTDAAFHLAIAQASRNVVLRQVMSGLLRLLEISIADTLRQLYRLPDIV 192 + AP D A+ DAAFH++IA+AS NVVL QVMSGLL LLE+SI+++LR+LY LP I+ Sbjct: 119 ANAPSGDPVIHAKADAAFHMSIARASHNVVLHQVMSGLLGLLEVSISESLRKLYGLPGII 178 Query: 193 AQLDQQHRQILDAILAGRAEEARQHANAHLDFVQQRLLDIEEAPARARRAA 243 LD QH+QI ++IL GR +EAR+ A AHL +V+ RL I++ AR RRA+ Sbjct: 179 ELLDGQHQQIFESILGGRVDEARRAAAAHLSYVESRLRLIDDISARERRAS 229 >ref|YP_002547278.1| transcriptional regulator GntR family [Agrobacterium vitis S4] gb|ACM38562.1| transcriptional regulator GntR family [Agrobacterium vitis S4] Length = 251 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 128/238 (53%), Positives = 173/238 (72%), Gaps = 3/238 (1%) Query: 6 LVDRLASLIARQALAPGQKLPSERTLAAEFGVSRSSLREAIGVLVSRGVLVARHGGGTFM 65 L R+ ++IA + L+PG +LP ER+LAAE VSRS LREAI L+SRG++V+R GGGTF+ Sbjct: 3 LTGRIEAMIAERKLSPGDRLPPERSLAAELDVSRSRLREAIQQLISRGIVVSRRGGGTFV 62 Query: 66 ADDEQAALTDPIAEALQPLAPLARSDAGYWKDVAEIRFSLEGDAAYFAALRASDDDKRRL 125 A ++ A + AL+PL P+ + +AGYW+DV EIR SL+ DAAY+AALRA+D DK R+ Sbjct: 63 AIEDAAR---SLERALEPLLPMVQGEAGYWRDVMEIRKSLDTDAAYYAALRATDLDKERM 119 Query: 126 QQAYLAVSTAPLDDLAAQARTDAAFHLAIAQASRNVVLRQVMSGLLRLLEISIADTLRQL 185 A+ A+S A + +QAR DAAFH+AIA+AS NVVLRQ+++GL LL+ SIA +L Q Sbjct: 120 TVAFAAMSAAEGGNPQSQARADAAFHMAIAEASHNVVLRQIVAGLSELLQQSIAQSLMQF 179 Query: 186 YRLPDIVAQLDQQHRQILDAILAGRAEEARQHANAHLDFVQQRLLDIEEAPARARRAA 243 YR PD+ L++QH ILD ILAGR +EAR+ A HL FV++ L IE+ AR +RA+ Sbjct: 180 YRQPDLGPALERQHGLILDTILAGRPDEARKAAADHLAFVEENLRVIEDNRAREQRAS 237 >ref|YP_001418811.1| GntR domain-containing protein [Xanthobacter autotrophicus Py2] gb|ABS69154.1| GntR domain protein [Xanthobacter autotrophicus Py2] Length = 252 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 128/237 (54%), Positives = 162/237 (68%), Gaps = 3/237 (1%) Query: 6 LVDRLASLIARQALAPGQKLPSERTLAAEFGVSRSSLREAIGVLVSRGVLVARHGGGTFM 65 L D + +LIA L G +LPSER LAA+FGVSRS LREAI L SRG+L AR GGGTF+ Sbjct: 4 LSDEIEALIAEGGLQTGARLPSERKLAADFGVSRSRLREAIQQLTSRGILTARQGGGTFV 63 Query: 66 ADDEQAALTDPIAEALQPLAPLARSDAGYWKDVAEIRFSLEGDAAYFAALRASDDDKRRL 125 A + D +AL PL+ LAR + GYW+DV EIR SL+GD AY AALRA D+D+ RL Sbjct: 64 AATLSPSSLD---KALSPLSSLARMEPGYWQDVMEIRKSLDGDTAYCAALRAGDEDRARL 120 Query: 126 QQAYLAVSTAPLDDLAAQARTDAAFHLAIAQASRNVVLRQVMSGLLRLLEISIADTLRQL 185 A+ + A D A QA DAAFH+A+A+AS N VLRQVM+GL +L+ SI+ +L +L Sbjct: 121 TAAFERLLKAEGADEATQAGADAAFHMAVAEASHNAVLRQVMAGLFDVLQHSISASLEKL 180 Query: 186 YRLPDIVAQLDQQHRQILDAILAGRAEEARQHANAHLDFVQQRLLDIEEAPARARRA 242 YRLP L+ QHR I +A++ GRA++AR A HLDFV+ L IE+A AR RR+ Sbjct: 181 YRLPRTAHALEDQHRLIFEAVVEGRADDARDAALRHLDFVEDSLRLIEDAAARERRS 237 >ref|YP_003929962.1| L-lactate dehydrogenase operon regulatory protein [Pantoea vagans C9-1] gb|ADO08513.1| Putative L-lactate dehydrogenase operon regulatory protein [Pantoea vagans C9-1] Length = 257 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 116/243 (47%), Positives = 148/243 (60%), Gaps = 8/243 (3%) Query: 2 TASPLVDRLASLIARQALAPGQKLPSERTLAAEFGVSRSSLREAIGVLVSRGVLVARHGG 61 TA PLV RL + I L PG +LP+ER L+AE GVSRSSLREAI L+S G+L++R GG Sbjct: 4 TADPLVTRLRAYITEHQLEPGMRLPAERQLSAELGVSRSSLREAIQQLISSGMLISRRGG 63 Query: 62 GTFMADDEQAALTDPIAEALQPLAPLARSDAGYWKDVAEIRFSLEGDAAYFAALRASDDD 121 GT++ I E P+ L R D Y D+ E R ++E A+ AALRA+D D Sbjct: 64 GTWIRQQLAPWSEQRIVE---PIRQLLRDDPDYRYDILEARHAIEASTAWHAALRATDAD 120 Query: 122 KRRLQQAY---LAVSTAPLDDLAAQARTDAAFHLAIAQASRNVVLRQVMSGLLRLLEISI 178 K +LQ A+ L + + DLAAQA D FHLAIA+AS NVVL Q M G LL+ S+ Sbjct: 121 KEKLQYAFDATLKLKESDDPDLAAQA--DVRFHLAIAEASHNVVLLQTMRGFFELLQSSV 178 Query: 179 ADTLRQLYRLPDIVAQLDQQHRQILDAILAGRAEEARQHANAHLDFVQQRLLDIEEAPAR 238 + +++Y P I A+L +QHR +LDAILAG A+ ARQ A HL FV L + E AR Sbjct: 179 MQSRQRMYTQPAIFARLTEQHRGLLDAILAGDADAARQAAMQHLGFVHTTLKSLHEDEAR 238 Query: 239 ARR 241 R Sbjct: 239 QAR 241 >ref|ZP_08206981.1| transcriptional regulator GntR family [Novosphingobium nitrogenifigens DSM 19370] gb|EGD60914.1| transcriptional regulator GntR family [Novosphingobium nitrogenifigens DSM 19370] Length = 255 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 130/229 (56%), Positives = 154/229 (67%), Gaps = 4/229 (1%) Query: 6 LVDRLASLIARQALAPGQKLPSERTLAAEFGVSRSSLREAIGVLVSRGVLVARHGGGTFM 65 L ++ LIA + L G +LP+ER LA EFGVSRS LRE I LVS+G LV+R GGG F+ Sbjct: 8 LQGKIRDLIASRGLGAGDRLPAERALAVEFGVSRSRLREDIQQLVSQGHLVSRRGGGHFV 67 Query: 66 ADDEQAALTDPIAEALQPLAPLARSDAGYWKDVAEIRFSLEGDAAYFAALRASDDDKRRL 125 A E +P+ AL PLA LARS+AGYW DV EIR SLEGD A AALRAS++DK RL Sbjct: 68 AVPEPG---EPVRAALLPLASLARSEAGYWHDVMEIRLSLEGDTAAHAALRASEEDKARL 124 Query: 126 QQAYLAVSTAPLDDLAAQARTDAAFHLAIAQASRNVVLRQVMSGLLRLLEISIADTLRQL 185 + A A D AA A DAAFHL +AQA+ NVVL QVM GL LLE SI+++L +L Sbjct: 125 TKLADAFHAA-SADPAALAHADAAFHLGVAQAAHNVVLVQVMDGLQSLLEASISESLLRL 183 Query: 186 YRLPDIVAQLDQQHRQILDAILAGRAEEARQHANAHLDFVQQRLLDIEE 234 Y LP ++ +LD QHR ILDAIL G AE AR A HL FV RL +EE Sbjct: 184 YHLPGMIDELDAQHRAILDAILGGEAETARAAATRHLAFVTDRLRMVEE 232