BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1088.p (880 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001418812.1| hypothetical protein Xaut_3931 [Xanthobacter... 375 e-101 ref|YP_002547798.1| membrane protein [Agrobacterium vitis S4] >g... 304 4e-80 ref|ZP_08645477.1| membrane protein [Acetobacter tropicalis NBRC... 202 3e-49 ref|YP_191985.1| hypothetical protein GOX1588 [Gluconobacter oxy... 157 1e-35 ref|ZP_08697971.1| membrane protein [Acetobacter aceti NBRC 14818] 152 3e-34 >ref|YP_001418812.1| hypothetical protein Xaut_3931 [Xanthobacter autotrophicus Py2] gb|ABS69155.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2] Length = 629 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 293/605 (48%), Positives = 358/605 (59%), Gaps = 13/605 (2%) Query: 279 AHARRIARRLELRSFPLLQEQFNAGEGVRAGVAIALPLAAAMLSGQRWLAWAVFAAFWTC 338 A RR AR +ELRSF L E F EG+RA +A+A+PLA + SG+ WA+F A+W+C Sbjct: 29 ATLRRAARWMELRSFGLTPEHFTFAEGLRAALAVAVPLALVLASGRYQYGWAIFGAYWSC 88 Query: 339 LCDAPGPHAQRRRLLGGFAVAGTAVAFFGAWSASWGPHAALLTAPLMVLGVVTLTAAVES 398 LCD PGPH RR LL F + GT VAF G+W AS+G AAL+ APL+V+ L + Sbjct: 89 LCDTPGPHRLRRALLALFVILGTPVAFLGSWLASFGTVAALVAAPLIVVLSALLPVRLAH 148 Query: 399 GTLLGTLLAVVAVVAAGFPHGAAMAALQAASFCAGAAWAWLLINLAWRLDDQAALRQAAR 458 LL L+ V VVA GFPH AA A A SF AG+ WA+LL+N+ WR+D RQ + Sbjct: 149 AGLLSALVGGVGVVAVGFPHPAAQAGELALSFMAGSCWAYLLVNVLWRVDAWRPARQMSV 208 Query: 459 AALLRMMDMSLALLAAPPGQHRDQHWHREHGEHRRATRLALERLRTMLQRHAGTPMAEAD 518 A R+ DM ++A G HRD WH H EHRRA R ALERLR ++ R+ P A+ Sbjct: 209 AVFTRLGDMLADMVATGDGPHRDGAWHPAHSEHRRAVRFALERLRALIARYEREPEADLR 268 Query: 519 AWERRLEACEMLFHTLIALEHAAIQQLASPGERRRAARVAIAVLLHAHAVLETSPAKAN- 577 + EA E LF IALEH I + ER AA + +L A + P + Sbjct: 269 PFLLLQEAAEQLFSAAIALEHDFILREGPARERMAAADAMLEAVLACRATVAEGPRGGDI 328 Query: 578 --RPRSARPHAAAADP--LIAGCLRALEQADRLLQARQAAHAGPCSLPSSPAPAVPPRNR 633 R A A P L AGCL A +QA L+ A Q A LP P Sbjct: 329 LARQMDALGQLRATLPEGLAAGCLLATQQAAGLVAAAQTGAAVASLLP-------PVVGD 381 Query: 634 LRAGLLRGVQQGGRQAAGVAAVFYAAEAFHLGYPYWATMAVVVVLQGAARQTWTRCLERI 693 R ++QG RQAA V V Y A F GYPYWATMAVV+V+QGAAR WTR LERI Sbjct: 382 GRIRWQDALKQGVRQAAAVVVVLYVAIVFQFGYPYWATMAVVMVMQGAARVAWTRGLERI 441 Query: 694 LGSLLGGLLALTLLQLVPAHGLLLPLVAVLLAGLAIALRLVNYTVFVVFLTMLFICVTDM 753 GSLLGGL AL LL + A L VAVLLAG++IALR VNY VFVVFLTMLFI VT++ Sbjct: 442 FGSLLGGLAALCLLLVSDAPPTLAG-VAVLLAGVSIALRSVNYAVFVVFLTMLFIIVTEL 500 Query: 754 LQPGVGIASARALDNLIGSAAALLAALALWPDLGASPRQRIADGLKANRAYLEAVVTHQA 813 +QPG GI SAR LDN +GS A+LA L LWPD G + IADGL NRAY++AV + Sbjct: 501 VQPGAGIGSARILDNTVGSLTAVLAVLLLWPDFGPPVTRLIADGLNTNRAYIDAVRAGRD 560 Query: 814 PAALRRLQRQAGLASIEAETALHELGGLRRQRDALSADEVASLRSLRELAGQASVQWHRQ 873 + +R AGL+SI AE ALH LGGL R+ LS ++ A+LR LR LAG+A+ WHR+ Sbjct: 561 EGTIAAARRAAGLSSIAAEVALHALGGLLRRWQRLSHEDAAALRELRMLAGEAAAAWHRR 620 Query: 874 NGRAD 878 D Sbjct: 621 LAAGD 625 >ref|YP_002547798.1| membrane protein [Agrobacterium vitis S4] gb|ACM39082.1| membrane protein [Agrobacterium vitis S4] Length = 600 Score = 304 bits (779), Expect = 4e-80, Method: Composition-based stats. Identities = 243/613 (39%), Positives = 323/613 (52%), Gaps = 30/613 (4%) Query: 272 SSARPLAAHARRIARRLELRSFPLLQEQFNAGEGVRAGVAIALPLAAAMLSGQRWLAWAV 331 ++ RP RRIAR LELR+ L E + +G+R+ + +P+ + +GQ W++ Sbjct: 7 TARRPSGHWVRRIARWLELRAIGLTPEHLDIIDGLRSAFIVGVPVLI-VAAGQNQFGWSI 65 Query: 332 FAAFWTCLCDAPGPHAQRRRLLGGFAVAGTAVAFFGAWSASWGPHAALLTAPLMVLGVVT 391 FAAFWTCL D G +RR+L FA+ G+ AF +W A +G A L ++V Sbjct: 66 FAAFWTCLADTGGEKRFQRRMLATFALLGSLTAFLASWLAGFGSIAGLAAGSILVGLTAL 125 Query: 392 LTAAVESGTLLGTLLAVVAVVAAGFPHGAAMAALQAASFCAGAAWAWLLINLAWRLDDQA 451 L L+ TLL VV VVAAG+PH A AAL A SF AG+AWA L++ + W D Sbjct: 126 LPLRWPVVPLVATLLGVVGVVAAGYPHTAPQAALLACSFLAGSAWAALVLTVLWPTDAWR 185 Query: 452 ALRQAARAALLRMMDMSLAL--LAAPPGQHRDQHWHREHGEHRRATRLALERLRTMLQRH 509 R+A A R+ DM+L L ++ P Q W + +HRRA R A+ER R+ L R Sbjct: 186 PARRAISAVYARLADMTLELDTISQPAAM---QAWTFKSSQHRRAVRNAMERARSHLAR- 241 Query: 510 AGTPMAEAD--AWERRLEACEMLFHTLIALEH-------AAIQQLASPGERRRAARVAIA 560 A P ++D A L A + +FH L+AL+H A I QL + R A Sbjct: 242 AARPSEQSDKTALHIALLAADDIFHALLALDHLRSSERQADIGQLCAEVIRPSLIAAAQN 301 Query: 561 VLLHAHAVLETSPAKANRPRSARPHAAAADPLIAGCLRALEQADRLLQARQAAHAGPCSL 620 + LH V E NR + +AG +R++ A LQ + A + Sbjct: 302 LSLHTEPVTELQ----NRLSVLEKSVSDRRDAVAGAVRSIATA---LQWKTAPDVAETAG 354 Query: 621 PSSPAPAVPPRNRLRAGLLRGVQQGGRQAAGVAAVFYAAEAFHLGYPYWATMAVVVVLQG 680 P A + R R LRG R A GV V A L YPYWA MAVVVVLQ Sbjct: 355 PEQAASDKMAQARQRQHFLRGAV---RSAVGVTVVTVVAHLLALNYPYWAAMAVVVVLQP 411 Query: 681 AARQTWTRCLERILGSLLGGLLALTLLQLVPAHGLLLPLVAVLLAGLAIALRLVNYTVFV 740 R +W+R LERI+GS++G LAL LL +PA GLL ++ + LA IALR V+YT+FV Sbjct: 412 DRRMSWSRALERIVGSVVGSALALALLTSIPASGLLTAII-IPLAAATIALRSVSYTLFV 470 Query: 741 VFLTMLFICVTDMLQPGVGIASARALDNLIGSAAALLAALALWPDLGASPRQRIADGLKA 800 LTMLF+ DML PG GIASAR LDN+IGS AA++ +WPD S + A L A Sbjct: 471 TVLTMLFVLTMDMLHPGAGIASARMLDNIIGSLAAIIVTFLVWPDKAPSLSELAARALDA 530 Query: 801 NRAYLEAVVTHQAPAALRRLQRQAGLASIEAETALHELGGLRRQRDALSADEVASLRSLR 860 NRAY +A A A + +R AG+AS EAE A H R A +V +L R Sbjct: 531 NRAYRDAAERGDA-AQIALTRRAAGIASTEAEIAFHAPD--RYLGKTPPATDVETLAKAR 587 Query: 861 ELAGQASVQWHRQ 873 +LAG+A+V WH + Sbjct: 588 QLAGEAAVLWHSR 600 >ref|ZP_08645477.1| membrane protein [Acetobacter tropicalis NBRC 101654] dbj|GAA08781.1| membrane protein [Acetobacter tropicalis NBRC 101654] Length = 678 Score = 202 bits (513), Expect = 3e-49, Method: Composition-based stats. Identities = 195/609 (32%), Positives = 284/609 (46%), Gaps = 29/609 (4%) Query: 284 IARRLELRSFPLLQEQFNAGEGVRAGVAIALPLAAAMLSGQRWLAWAVFAAFWTCLCDAP 343 +A L +R+ + EQ EG+RAGVA+ + A+ G +AW+ FAAFWTCL D Sbjct: 28 LAHWLGVRAIAIAPEQIAIREGLRAGVAVGTVMILALHLGMPLMAWSAFAAFWTCLVDPG 87 Query: 344 GPHAQRRRLLGGFAVAGTAVAFFGAWSASWGPHAALLTAPL--MVLGVVTLTAAVESGTL 401 G R + + FA AGT + + +A +G A + L + G+ + A+ T Sbjct: 88 GLLRPRLKTMLTFAAAGTVITGVISAAAGYGTLPAFIGVGLCSFLCGLARMKGAI--ATQ 145 Query: 402 LGTLLAVVAVVAAGFPHGAAMAALQAASFCAGAAWAWLLINLAWRLDDQAALRQAARAAL 461 + L A+V VVA +P A + F GAAWA + LAW +D A RQA A Sbjct: 146 ISVLAAIVGVVAVCYPQTPIGALHLSGLFILGAAWATCICMLAWPVDPYAPQRQACAAIF 205 Query: 462 LRMMDMSLALLA-APPGQHRDQHWHREHGEHRRATRLALERLRTMLQRHAGTPMAE--AD 518 M+ LL A P + +RR R +E+ R ++ + + + Sbjct: 206 REQARMTRRLLEFAQPAEPESLMHQNAISAYRRDIRSRIEQTRAKIEVLSASTLTSRTRK 265 Query: 519 AWERRLEACEMLFHTLIALEHAAIQQLASPG--ERRRAARVAIAVLLHAHAVLETSP--- 573 +EA + +F ++A EHA + +P RR +A + +L T P Sbjct: 266 TLLPAVEAADRIFIAVMAFEHAMLSGSPAPTPLARRTIRLLATTLQRVGREILSTKPRPE 325 Query: 574 AKANRPRSARPHAAAADPLIAGCLRALEQADRLLQARQAAHAGPCSLPSSPAPAVPPRNR 633 A + R + D L A R A L QAA P + P P Sbjct: 326 ALQRQIRFLKLVGEREDDLFAKGARLCANA---LSDLQAAWQTPAAAPQQARPVAASAPA 382 Query: 634 LRAGLLR-GVQQGGRQAAGVAAVFYAAEAFHLGYPYWATMAVVVVLQGAARQTWTRCLER 692 A R ++ R + V + + L Y YWA MAVVVV Q T R +ER Sbjct: 383 RPAPPNRLFLRHAARLSVAVMVAYAISLKLDLSYAYWAMMAVVVVTQPQVNTTLPRTIER 442 Query: 693 ILGSLLGGLLALTLLQLVPAHGLLLPLVAVLLAGLAIALRLVNYTVFVVFLTMLFICVTD 752 + GS+ GGLLA + L+P G+L L+ LA IALR VNYT+ V+F+T LF+ VTD Sbjct: 443 VAGSIAGGLLAAIMGVLLPMWGIL--LLVFPLAAATIALRSVNYTLCVMFMTQLFVLVTD 500 Query: 753 MLQPGVG--IASARALDNLIGSAAALLAALALWPDLGASPRQR-IADGLKANRAYLEAVV 809 ++ P +G +A AR+++N+IGS L A L LWP+ + P I KAN Y A+ Sbjct: 501 LVSPALGWDVALARSINNIIGSLVGLAACLLLWPERRSPPLATLITAAFKANMQY-AALA 559 Query: 810 THQAP---AALRRLQRQAGLASIEAETALHE--LGGLRRQRDALSADEVASLRSLRELAG 864 T+ P + + +R+AG S +AE + + GLRR + E+ L LR++AG Sbjct: 560 TNPQPVDWSTIEHARRKAGTTSTQAEIQYQQVRVEGLRRAEYLNRSGEILFL--LRKMAG 617 Query: 865 QASVQWHRQ 873 ASV W Q Sbjct: 618 AASVWWLEQ 626 >ref|YP_191985.1| hypothetical protein GOX1588 [Gluconobacter oxydans 621H] gb|AAW61329.1| Hypothetical protein GOX1588 [Gluconobacter oxydans 621H] Length = 663 Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats. Identities = 196/610 (32%), Positives = 274/610 (44%), Gaps = 34/610 (5%) Query: 273 SARPLAAHARR---IARRLELRSFPLLQEQFNAGEGVRAGVAIALPLAAAMLSGQRWLAW 329 S+RP R + + L S P+ EQ EG RA VA + L A+ Q LAW Sbjct: 11 SSRPALNRGRPFDFLTQFLARHSVPVSPEQIAPAEGSRAAVATVVALLPAIYEHQAVLAW 70 Query: 330 AVFAAFWTCLCDAPGPHAQRRRLLGGFAVAGTAVAFFGAWSASWGPHAALLTAPLMVLGV 389 A FAAFW+CL + G ++ R+LG F VAG + + A + L L L V Sbjct: 71 AAFAAFWSCLIEPGGTAREQLRILGLFTVAGAILGGVTSLIAVYPLWGVLPWLVLTGLLV 130 Query: 390 VTLTAAVESGTLLGTLLAVVAVVAAGFP-HGAAMAALQAASFCAGAAWAWLLINLAWRLD 448 A S LL LL V + GFP HG A + +F G WA LL + W L Sbjct: 131 GMARALTPSMALLCVLLGCVMLAGTGFPAHGLQDALVIGGAFGGGGLWATLLCLVIWPLH 190 Query: 449 DQAALRQAARAALLRMMDMSLALLAAPPGQHRDQHWHREHGEHRRATRLALERLRTM-LQ 507 A R+A R++ + +AA Q HR+ R A+ER R M LQ Sbjct: 191 PYAPARRAV-GGCYRLLSVMAGEIAAGRLQET---------VHRQNVRTAIERARGMALQ 240 Query: 508 RHAG-TPMAEADAWERRLEACEMLFHTLIALEHAAIQQLASPGERRRAARVAIAVLLHAH 566 AG L E LF ++A+EH E R A L Sbjct: 241 IDAGHASYGMRGRLIASLAGAERLFTAMLAVEHLV--------ETRGLDFEARGTLAAFS 292 Query: 567 AVLETSPAKANRPRSARPHAAAADPLIAGCLRALEQADRLLQARQAAHAGPCSLPSSPAP 626 A+ + + A P H A+ +AG + A L A A G + + Sbjct: 293 ALCQHASDAALDPAPDLGHLASEGLALAGSIPATAGPIGELVATSARTLGTLAEGLAQKE 352 Query: 627 AVPPRNRLRAGLLRGV----QQGGRQAAGVAAVFYAAEAFHLGYPYWATMAVVVVLQGAA 682 +P L + R Q R G+ A + L Y +WA +AV++V+Q + Sbjct: 353 RLPFDAELPRHVARLTPAIWQHTLRLVVGLLATYMTTWWLGLDYGFWALVAVLLVIQPSG 412 Query: 683 RQTWTRCLERILGSLLGGLLALTLLQLVPAHGLLLPLVAVLLAGLAIALRLVNYTVFVVF 742 + T R LER+LG++ GG+LAL L +P +L VAV + G AIA+R VNYT+ VVF Sbjct: 413 QTTLVRALERVLGTVGGGVLALLLTPFLPGSAQMLAAVAVFVIG-AIAMRAVNYTMLVVF 471 Query: 743 LTMLFICVTDMLQPGVGIASARALDNLIGSAAALLAALALWPD-LGASPRQRIADGLKAN 801 ++ FI VT+M+ P G+A R LDN +GS LL A + P G + + N Sbjct: 472 ISAQFIVVTEMIMPSQGVAWMRMLDNTLGSVIGLLCAFIVCPQRRGQDMDGLLQTAVVGN 531 Query: 802 RAYLEAVVTHQAPAALRRLQRQAGLASIEAETA---LHELGGLRRQRDALSADEVASLRS 858 YL AV+ + P R+QRQAG+ + AE A L LGG+ + + A LR+ Sbjct: 532 LRYLAAVLKREDPVMTDRIQRQAGIDTTRAEFARGSLPVLGGVSAVGERATQAH-ALLRA 590 Query: 859 LRELAGQASV 868 LR L+G+A++ Sbjct: 591 LRRLSGEATL 600 >ref|ZP_08697971.1| membrane protein [Acetobacter aceti NBRC 14818] Length = 575 Score = 152 bits (384), Expect = 3e-34, Method: Composition-based stats. Identities = 165/527 (31%), Positives = 230/527 (43%), Gaps = 42/527 (7%) Query: 284 IARRLELRSFPLLQEQFNAGEGVRAGVAIALPLAAAMLSGQRWLAWAVFAAFWTCLCDAP 343 I L +R+ + EQ EG+RAGVA+ + A +AW+ FAAFWTCL D Sbjct: 60 ITHWLGVRAISITPEQIGVREGLRAGVAVGSVMLLAWYLDAPLMAWSAFAAFWTCLVDPG 119 Query: 344 GPHAQRRRLLGGFAVAGTAVAFFGAWSASWG--PHAALLTAPLMVLGVVTLTAAVESGTL 401 G R L F +GT + + ++ +G P L + + G+ V T Sbjct: 120 GLIRLRLATLLKFGSSGTLITGLLSVASGYGLVPVFIALGICIFICGLARQRGPV--ATQ 177 Query: 402 LGTLLAVVAVVAAGFPHGAAMAALQAASFCAGAAWAWLLINLAWRLDDQAALRQAARAAL 461 + L A+VAVVA +P A F G+ WA L+ AW +D RQA A Sbjct: 178 ISVLAAIVAVVAVCYPQTPLGGVHLAGMFVGGSVWAALICIFAWPVDPYVPQRQACAAIF 237 Query: 462 LRMMDM--SLALLAAPPGQHRDQHWHREHGEHRRATRLALERLRTMLQRHAGTPMAEADA 519 +M L LL+ D +H E +RR R +E+ R ++ M AD Sbjct: 238 REQANMISRLLLLSERNALDHDALYH-EISSYRRDIRNRIEQARKRVE------MLSADV 290 Query: 520 WERR--------LEACEMLFHTLIALEHAAIQQLASPGERRRAARVAIAVLLHAHAVLET 571 R +EA + +F + EHAA P RR A +A + A + Sbjct: 291 LNSRTHGTLLRTVEAGDRIFVAAMGFEHAAFTAPLPPIARRTAGLIAATLRRAAREIASP 350 Query: 572 SPAKANRPRSA---RPHAAAADPLIAGCLRALEQADRLLQARQAAHAGPCSLPSSPAPAV 628 P R R L A C A LQ A + +SP+ + Sbjct: 351 QPRPECLTRQIHFLRTVGPRDGDLFARCAHLCADALTDLQQTWQTPAEDGQITASPSQS- 409 Query: 629 PPRNRLRAGLLRGVQQGGRQAAGVAAVFYAAEAFHLGYPYWATMAVVVVLQGAARQTWTR 688 +N A +R R + V + A L Y YWA MAVVVV+Q + T R Sbjct: 410 KAQNWPTAIFVR---HAARLSVAVLIAYAIALWLDLPYAYWAMMAVVVVIQPSVNVTLPR 466 Query: 689 CLERILGSLLGGLLALTLLQLVPAHGLLLPLVAVL-----LAGLAIALRLVNYTVFVVFL 743 LER+ GS+ GGLLA + G+ LP+ VL LA + IALR VNYT+ V+F+ Sbjct: 467 ALERVAGSVAGGLLAAVM-------GVTLPMPVVLLLIFPLAAVTIALRGVNYTLCVMFM 519 Query: 744 TMLFICVTDMLQP--GVGIASARALDNLIGSAAALLAALALWPDLGA 788 T LF+ VTD++ G +A +RA +N IGS L A + LWP+ A Sbjct: 520 TQLFVLVTDLVSTTHGWDVALSRAANNTIGSLVGLAACVLLWPEAKA 566