BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1085.p         (172 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004696361.1| hypothetical protein Nit79A3_3228 [Nitrosomo...    74   8e-12
ref|ZP_02905206.1| hypothetical protein BamMEX5DRAFT_0560 [Burkh...    66   2e-09
ref|ZP_06860399.1| hypothetical protein CbatJ_02205 [Citromicrob...    62   3e-08
ref|YP_004295638.1| hypothetical protein NAL212_2686 [Nitrosomon...    59   3e-07
ref|YP_113111.1| hypothetical protein MCA0595 [Methylococcus cap...    57   1e-06

>ref|YP_004696361.1| hypothetical protein Nit79A3_3228 [Nitrosomonas sp. Is79A3]
 gb|AEJ02962.1| hypothetical protein Nit79A3_3228 [Nitrosomonas sp. Is79A3]
          Length = 171

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 1   MKIRILVLLLGLPSFPALAAPLSQSLCKPGEKIIYSCQTARKKTASLCASADYPDKRSRL 60
           MK+   V L GL +  AL    ++SLC   E++I+SC    KKT S+CAS D+   +  L
Sbjct: 1   MKLNAFVCLCGLLTLTALPVWAAESLCDTHEQVIFSCSLG-KKTVSVCASNDFSASKGYL 59

Query: 61  QYRFGTASKIEMQFPETPQ--PAEGRFFRSYTMYSGGYESHVHFSTDSYDYFYY 112
           QYRFG    +E+ FP+  +  PA         M++GG   ++ F    + Y  Y
Sbjct: 60  QYRFGQKGALELAFPDLTEAAPASQSIQARTLMFAGGGGGYLRFINGLHHYIVY 113


>ref|ZP_02905206.1| hypothetical protein BamMEX5DRAFT_0560 [Burkholderia ambifaria
           MEX-5]
 gb|EDT43673.1| hypothetical protein BamMEX5DRAFT_0560 [Burkholderia ambifaria
           MEX-5]
          Length = 216

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 25  SLCKPGEKIIYSCQTARKKTASLCASADYPDKRSRLQYRFGTASKIEMQFPETPQPAEGR 84
           +LC+P E+I +SC    +K  SLCAS +       +QYR+G    I++QFP  P P  G 
Sbjct: 82  TLCQPHEEIYFSCSLG-EKMVSLCASGNVSPDNGYVQYRYGKPDHIDLQFPNKPHPPRGY 140

Query: 85  FFRSYTMYSGGYESHVHFSTDSYDYFYY 112
           F  S          HV F +  YDY  Y
Sbjct: 141 FGISDISIGSANFVHVKFRSGRYDYVIY 168


>ref|ZP_06860399.1| hypothetical protein CbatJ_02205 [Citromicrobium bathyomarinum
           JL354]
          Length = 203

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 12/135 (8%)

Query: 19  AAPLSQSLCKPGEKIIYSCQTARKKTASLCASADYPDKRSRLQYRFGTASKIEMQFPETP 78
           AA +++  C   E+ ++SC TA KK  ++C   +   +++  QYRFG+  K E+      
Sbjct: 58  AAAVTKVACASDEQELFSC-TAGKKRIAVCGVTNAQGQKTA-QYRFGSPGKAEIVLDG-- 113

Query: 79  QPAEGRFFRSYTMYSGGYESHVHFSTDSYDYFYYDRMIRTGFKGQ-NLPKDSSGLVVRER 137
               GRF  + T YSGG ES + F+     Y  Y R IRTGF  + N P+ + G+ V  R
Sbjct: 114 ----GRF--ANTAYSGGGESQIQFANGGVRYIVYSRTIRTGFDEEGNKPEFTDGVWV-VR 166

Query: 138 SSGKEQHRACYPDAV 152
                  R C  D V
Sbjct: 167 GDENLADRQCTADVV 181


>ref|YP_004295638.1| hypothetical protein NAL212_2686 [Nitrosomonas sp. AL212]
 gb|ADZ27476.1| hypothetical protein NAL212_2686 [Nitrosomonas sp. AL212]
          Length = 172

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 9   LLGLPSFPALAAPLSQSLCKPGEKIIYSCQTARKKTASLCASADYPDKRSRLQYRFGTAS 68
           L+GL  F A     ++S C+  E++I+SC    KKT S+CAS D+      LQYRFG   
Sbjct: 11  LIGLLFFSAWVDA-AESHCQMQEQVIFSCSLG-KKTVSVCASKDFSVHSGYLQYRFGPLG 68

Query: 69  KIEMQFPE-TPQPAEGRFFRSYT-MYSGGYESHVHFSTDSYDYFYY 112
             E  FP  +      +F R+ T M++GG   ++ F    Y Y  Y
Sbjct: 69  MPERIFPAVSASDPVAQFIRARTWMFAGGGGGYLRFINGQYHYLVY 114


>ref|YP_113111.1| hypothetical protein MCA0595 [Methylococcus capsulatus str. Bath]
 gb|AAU93152.1| hypothetical protein MCA0595 [Methylococcus capsulatus str. Bath]
          Length = 162

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 65/141 (46%), Gaps = 6/141 (4%)

Query: 1   MKIRILVLLLGLPSFPALAAPLSQSLCKPGEKIIYSCQTARKKTASLCASADYPDKRSRL 60
           MK  + +L LGL    + AAP   S C   EK ++SC    +KT S+CAS +       +
Sbjct: 1   MKRIVALLALGLVPAVSHAAP---SHCTAEEKTVFSCSVG-EKTVSVCASKELSPTAGSI 56

Query: 61  QYRFGTASKIEMQFPETPQPAEGRFFRSYTMYSGGYESHVHFSTDSYDYFYYDRMIRTGF 120
           QYRFG     E++ PE           +  MYSGG  + + FS   YDY  Y    R G+
Sbjct: 57  QYRFGPEGHPEIRLPEPAAHPAAAAKGATLMYSGGGGAFLRFSKGQYDYVVYTGSGR-GW 115

Query: 121 KGQNLPKDSSG-LVVRERSSG 140
           K   +  D  G L+   R  G
Sbjct: 116 KKDGVVVDKGGKLIANFRCKG 136