BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1084.p         (124 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774636.1| membrane protein [Herbaspirillum seropedicae...   152   2e-35
ref|YP_786404.1| membrane protein [Bordetella avium 197N] >gi|11...   122   2e-26
ref|YP_004415558.1| hypothetical protein PT7_0394 [Pusillimonas ...   105   2e-21
ref|YP_003979336.1| hypothetical protein AXYL_03301 [Achromobact...   105   3e-21
dbj|BAK53925.1| hypothetical protein [Chitiniphilus shinanonensis]    103   8e-21

>ref|YP_003774636.1| membrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62728.1| membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 126

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 98/109 (89%), Positives = 102/109 (93%)

Query: 1   MKERTLIAAGALNMFVAVGCGAFGAHGLKKTISEEMLAIWHTAVTYQVMHALGMIAVALL 60
           MKERTLIA GALNMF+AVGCGAFGAHGLKK ISEEMLAIWHTAVTYQVMHALGMIAVALL
Sbjct: 1   MKERTLIALGALNMFIAVGCGAFGAHGLKKMISEEMLAIWHTAVTYQVMHALGMIAVALL 60

Query: 61  MPRMAGAALHWAGRLMLAGIVIFSGSLYLLALTGTRILGAITPFGGAAF 109
           MPR+ GAAL WAG LMLAGIV+FSGSLYLLALTGTR+LGAITPFGG  F
Sbjct: 61  MPRLGGAALRWAGVLMLAGIVVFSGSLYLLALTGTRMLGAITPFGGVGF 109


>ref|YP_786404.1| membrane protein [Bordetella avium 197N]
 emb|CAJ49496.1| putative membrane protein [Bordetella avium 197N]
          Length = 125

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/123 (62%), Positives = 93/123 (75%)

Query: 1   MKERTLIAAGALNMFVAVGCGAFGAHGLKKTISEEMLAIWHTAVTYQVMHALGMIAVALL 60
           M +R  I   ALNM +AVG GAFGAHGLK+ +  +MLA+W T V YQ++HALG+ AVA L
Sbjct: 1   MPDRPFIILAALNMIIAVGAGAFGAHGLKRVLDADMLAVWQTGVLYQLVHALGLFAVAWL 60

Query: 61  MPRMAGAALHWAGRLMLAGIVIFSGSLYLLALTGTRILGAITPFGGAAFLAAWLLVAWAA 120
             R  GA L  AG LM AGIV+FSGSLYLLA+TGTR+LGAITP GG AFL +W L+AWA 
Sbjct: 61  TTRYNGALLPLAGWLMFAGIVLFSGSLYLLAVTGTRLLGAITPLGGVAFLLSWALIAWAV 120

Query: 121 LKN 123
           ++N
Sbjct: 121 IRN 123


>ref|YP_004415558.1| hypothetical protein PT7_0394 [Pusillimonas sp. T7-7]
 gb|AEC18934.1| hypothetical protein PT7_0394 [Pusillimonas sp. T7-7]
          Length = 123

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/123 (56%), Positives = 88/123 (71%)

Query: 1   MKERTLIAAGALNMFVAVGCGAFGAHGLKKTISEEMLAIWHTAVTYQVMHALGMIAVALL 60
           M +R LI   AL + V VG GAFGAHGLK+ I+ +ML++W TAV YQ++H LGM+ +A L
Sbjct: 1   MTDRQLIIVAALTLLVGVGAGAFGAHGLKRMITPDMLSVWQTAVLYQLIHGLGMLVIAAL 60

Query: 61  MPRMAGAALHWAGRLMLAGIVIFSGSLYLLALTGTRILGAITPFGGAAFLAAWLLVAWAA 120
             R A   L  +G +M AGI+IFSGSLY L LT T+ LGAITP GGAAFL AW +VA AA
Sbjct: 61  GSRFASPLLSLSGSVMFAGILIFSGSLYALVLTNTKWLGAITPIGGAAFLIAWAMVAVAA 120

Query: 121 LKN 123
            ++
Sbjct: 121 YRS 123


>ref|YP_003979336.1| hypothetical protein AXYL_03301 [Achromobacter xylosoxidans A8]
 gb|ADP16621.1| hypothetical protein AXYL_03301 [Achromobacter xylosoxidans A8]
          Length = 125

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 69/122 (56%), Positives = 88/122 (72%)

Query: 1   MKERTLIAAGALNMFVAVGCGAFGAHGLKKTISEEMLAIWHTAVTYQVMHALGMIAVALL 60
           M +R L    ALN+ VAVG GAFGAHGLK+ ++ E+L++W T V Y ++HALG+  VALL
Sbjct: 1   MTDRQLTILAALNLMVAVGAGAFGAHGLKRMLTPELLSVWQTGVLYHLIHALGLFVVALL 60

Query: 61  MPRMAGAALHWAGRLMLAGIVIFSGSLYLLALTGTRILGAITPFGGAAFLAAWLLVAWAA 120
             R     L  AG +M  GIV+FSGSLY+L+LTGT  LGA+TPFGG AFLA+W +VA AA
Sbjct: 61  GARYGSPLLSAAGVVMFVGIVLFSGSLYVLSLTGTHWLGAVTPFGGVAFLASWAMVALAA 120

Query: 121 LK 122
            +
Sbjct: 121 YR 122


>dbj|BAK53925.1| hypothetical protein [Chitiniphilus shinanonensis]
          Length = 123

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 75/106 (70%), Positives = 89/106 (83%)

Query: 1   MKERTLIAAGALNMFVAVGCGAFGAHGLKKTISEEMLAIWHTAVTYQVMHALGMIAVALL 60
           M +R L+AA A+N+F+AV  GAFGAHGLK  +SE MLAIWHTAVTYQ++HALG+  VALL
Sbjct: 1   MNDRQLVAAAAINLFIAVAAGAFGAHGLKAVLSEPMLAIWHTAVTYQMVHALGLFVVALL 60

Query: 61  MPRMAGAALHWAGRLMLAGIVIFSGSLYLLALTGTRILGAITPFGG 106
           +PR+ G  L W+G LMLAGIV+FSGSLYLLALTG R+LGAITP GG
Sbjct: 61  LPRLPGRLLAWSGGLMLAGIVLFSGSLYLLALTGVRVLGAITPLGG 106