BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1081.p (300 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754620.1| nitrate ABC transporter permease [Collimonas... 389 e-106 ref|YP_003774633.1| nitrate transporter permease [Herbaspirillum... 388 e-106 ref|ZP_08274285.1| Nitrate ABC transporter, permease protein [Ox... 387 e-105 ref|YP_001352171.1| ABC-type nitrate transport system, permease ... 372 e-101 ref|YP_004156321.1| nitrate ABC transporter inner membrane subun... 368 e-100 >ref|YP_004754620.1| nitrate ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK63797.1| Nitrate ABC transporter, permease protein [Collimonas fungivorans Ter331] Length = 302 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 243/302 (80%), Positives = 262/302 (86%), Gaps = 2/302 (0%) Query: 1 MSAVMDTMMNDKPAPATAE--VAIPAAVAVPKVKKTKAARRNLPFAGWLMKILPPVTGLA 58 MSA+MDT N AT + A AV + + K R WLM+I+ P+ GLA Sbjct: 1 MSAIMDTAANANRQAATMDNNPAEAPAVTIAPLPLPKTGNRRSSMPSWLMQIIAPLLGLA 60 Query: 59 FLVLVWQIIALKTASFPTPLVTLQEAIKLFSDPFYRTGPNDQGIGWNVLASLQRVGMGFG 118 FLVLVWQIIA+ + FPTPL+TLQEA+KLF+DPFYRT PNDQGIGWN+LASLQRVG+GFG Sbjct: 61 FLVLVWQIIAMNNSQFPTPLLTLQEALKLFADPFYRTSPNDQGIGWNILASLQRVGVGFG 120 Query: 119 LAALVGIPLGFAIGRVEFLSRMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIWSIFIC 178 LAALVGIPLGF IGR FLS MFGPIISLL+PVSPLAWLPIGLLVFKSANPAAIWSIFIC Sbjct: 121 LAALVGIPLGFMIGRFRFLSSMFGPIISLLKPVSPLAWLPIGLLVFKSANPAAIWSIFIC 180 Query: 179 SIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSIGTAWL 238 SIWPMIINTAVGVQRVPQDYMNVARVLNLSEWK++TKILFPSVLPYMLTGVRL+IGTAWL Sbjct: 181 SIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKIITKILFPSVLPYMLTGVRLAIGTAWL 240 Query: 239 VIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLVLEQLLVALAKAFTYEQV 298 VIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGL+LEQLLVALAKAFTYEQV Sbjct: 241 VIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLLLEQLLVALAKAFTYEQV 300 Query: 299 NN 300 N Sbjct: 301 AN 302 >ref|YP_003774633.1| nitrate transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62725.1| ABC-type nitrate transporter, permease component protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 248/307 (80%), Positives = 267/307 (86%), Gaps = 7/307 (2%) Query: 1 MSAVMDTMMNDKPAPATAEVAIPAAVAVPKVKKT-------KAARRNLPFAGWLMKILPP 53 MSAV++++M + PA + P A + + + A++ L G M++ PP Sbjct: 1 MSAVVESIMGENAKPAGPAGSHPPAAVNSQAPASPPAAIPARRAKKRLASGGLFMRVAPP 60 Query: 54 VTGLAFLVLVWQIIALKTASFPTPLVTLQEAIKLFSDPFYRTGPNDQGIGWNVLASLQRV 113 + GLA LVLVWQIIALKT+SFPTP VTL+EA +F+DPFYR PNDQGIGWNVLASLQRV Sbjct: 61 LLGLALLVLVWQIIALKTSSFPTPWVTLKEAGVMFADPFYRNSPNDQGIGWNVLASLQRV 120 Query: 114 GMGFGLAALVGIPLGFAIGRVEFLSRMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIW 173 G GFGLAALVGIPLGFAIGRVEFL+RMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIW Sbjct: 121 GTGFGLAALVGIPLGFAIGRVEFLARMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIW 180 Query: 174 SIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSI 233 SIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSI Sbjct: 181 SIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSI 240 Query: 234 GTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLVLEQLLVALAKAF 293 GTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLVLEQLLVALAKAF Sbjct: 241 GTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLVLEQLLVALAKAF 300 Query: 294 TYEQVNN 300 TYEQVNN Sbjct: 301 TYEQVNN 307 >ref|ZP_08274285.1| Nitrate ABC transporter, permease protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF32258.1| Nitrate ABC transporter, permease protein [Oxalobacteraceae bacterium IMCC9480] Length = 307 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 235/303 (77%), Positives = 261/303 (86%), Gaps = 7/303 (2%) Query: 1 MSAVMDTM--MNDKPAPATAEVAIPAAVAVPKVKKTKA-----ARRNLPFAGWLMKILPP 53 MSAV+DT+ +D+P P A+P + + A RR P ++M LPP Sbjct: 1 MSAVIDTLNHASDEPVPPVTANALPVTAESQRRRAVGADVPRTVRRKSPLTPYVMAGLPP 60 Query: 54 VTGLAFLVLVWQIIALKTASFPTPLVTLQEAIKLFSDPFYRTGPNDQGIGWNVLASLQRV 113 + GLA LVL+WQI+A + + FPTP+VTL EAIKLFSDPFYR GPNDQGIGWN+LASL+RV Sbjct: 61 LVGLALLVLLWQIVAARNSGFPTPMVTLTEAIKLFSDPFYRNGPNDQGIGWNILASLKRV 120 Query: 114 GMGFGLAALVGIPLGFAIGRVEFLSRMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIW 173 GMGFGLAA+VGIPLGFAIGR +F+S MFGPIISLL+PVSPLAWLPIGLLVFK+A+PAAIW Sbjct: 121 GMGFGLAAVVGIPLGFAIGRFKFMSGMFGPIISLLKPVSPLAWLPIGLLVFKAADPAAIW 180 Query: 174 SIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSI 233 SIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRL+I Sbjct: 181 SIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLAI 240 Query: 234 GTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLVLEQLLVALAKAF 293 GTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGL+LEQ LVALA+AF Sbjct: 241 GTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQALVALARAF 300 Query: 294 TYE 296 TYE Sbjct: 301 TYE 303 >ref|YP_001352171.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] gb|ABR89982.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] Length = 309 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 220/294 (74%), Positives = 252/294 (85%), Gaps = 6/294 (2%) Query: 7 TMMNDKPAPATAEVAIPAAVAVPKVKKTKAARRNLPFAGWLMKILPPVTGLAFLVLVWQI 66 +M ++ PA A VA PKVK ++R PF L+ +LPP+ G+ FL+LVW+I Sbjct: 22 SMRSEVAGPADAAVAKATPAVAPKVKAKWSSR---PF---LLAVLPPIFGMVFLILVWEI 75 Query: 67 IALKTASFPTPLVTLQEAIKLFSDPFYRTGPNDQGIGWNVLASLQRVGMGFGLAALVGIP 126 I+ K++ P+PLVT Q A LF+DPFY GPNDQGIGWN+LASL+RVGMGFG+AALVGIP Sbjct: 76 ISAKSSGIPSPLVTFQSAQALFADPFYSNGPNDQGIGWNILASLKRVGMGFGMAALVGIP 135 Query: 127 LGFAIGRVEFLSRMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIWSIFICSIWPMIIN 186 LGF IGR +FLS MF PIISLL+PVSPLAWLPIGLLVFK+A+PAAIWSIFICSIWPMIIN Sbjct: 136 LGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVFKAADPAAIWSIFICSIWPMIIN 195 Query: 187 TAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSIGTAWLVIVAAEML 246 TAVGVQRVPQDYMNVA+VL LSEWK++TKILFPSVLPYMLTGVRL+IGTAWLVIVAAEML Sbjct: 196 TAVGVQRVPQDYMNVAKVLKLSEWKIVTKILFPSVLPYMLTGVRLAIGTAWLVIVAAEML 255 Query: 247 TGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLVLEQLLVALAKAFTYEQVNN 300 TGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGL+LEQ+LV +A+AFTYE V + Sbjct: 256 TGGVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGLILEQILVGIARAFTYEDVKS 309 >ref|YP_004156321.1| nitrate ABC transporter inner membrane subunit [Variovorax paradoxus EPS] gb|ADU38210.1| nitrate ABC transporter, inner membrane subunit [Variovorax paradoxus EPS] Length = 312 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 203/281 (72%), Positives = 239/281 (85%), Gaps = 1/281 (0%) Query: 21 AIPAAVAVPKVKKTKAARRNLPFAGWLMKILPPVTGLAFLVLVWQIIALK-TASFPTPLV 79 A P PK ++ + R + + M++LPP+ G L+L+W+++A+K T FPTPL Sbjct: 32 AAPHPNPFPKGEREQKQRTPIDLRAFWMRVLPPLAGFGLLLLIWELVAMKSTTGFPTPLA 91 Query: 80 TLQEAIKLFSDPFYRTGPNDQGIGWNVLASLQRVGMGFGLAALVGIPLGFAIGRVEFLSR 139 T Q+A+ +FSDPFY GPNDQG+GWNVL+SLQRV +GFGLAALVGIP GFAIGR EFL+R Sbjct: 92 TWQQALTVFSDPFYSKGPNDQGVGWNVLSSLQRVALGFGLAALVGIPAGFAIGRFEFLAR 151 Query: 140 MFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIWSIFICSIWPMIINTAVGVQRVPQDYM 199 MF P+ISL+RPVSPLAWLPIGLLVFK ANPAAIW+IFICSIWPM+INTAVGVQRVP DYM Sbjct: 152 MFNPLISLMRPVSPLAWLPIGLLVFKGANPAAIWTIFICSIWPMVINTAVGVQRVPSDYM 211 Query: 200 NVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSIGTAWLVIVAAEMLTGGVGIGFWVWDE 259 NVA+VLNLSEWK+LTKILFP+VLPYMLTGVRL++GTAWLVIVAAEMLTGGVGIGFWVWDE Sbjct: 212 NVAKVLNLSEWKILTKILFPAVLPYMLTGVRLAVGTAWLVIVAAEMLTGGVGIGFWVWDE 271 Query: 260 WNNLNVPHIIIAIVVIGVVGLVLEQLLVALAKAFTYEQVNN 300 WNNLNV +IIIAI VIG+VGLVLE L+ LA AFT+E+V + Sbjct: 272 WNNLNVANIIIAIFVIGIVGLVLEFALIKLATAFTFEEVKS 312