BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1080.p (509 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774632.1| nitrate transporter periplasmic protein [Her... 768 0.0 ref|YP_004754621.1| nitrate ABC transporter nitrate-binding prot... 722 0.0 ref|ZP_08274284.1| Nitrate ABC transporter, nitrate-binding prot... 686 0.0 ref|YP_001352170.1| nitrate transport system substrate-binding p... 669 0.0 ref|YP_001098775.1| putative nitrate transporter NrtA [Herminiim... 669 0.0 >ref|YP_003774632.1| nitrate transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62724.1| ABC-type nitrate transporter, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 414 Score = 768 bits (1982), Expect = 0.0, Method: Composition-based stats. Identities = 380/411 (92%), Positives = 395/411 (96%), Gaps = 1/411 (0%) Query: 98 ADRVDGKRRTLLQGGALAAGSGMLGMLPGGAWAAGSDKPEKEEVKIGFIPLTDCASVVMA 157 ++VDGKRRTL+QG LAA +G LG+ GAWAAGSDKPEKEEVKIGFIPLTDCASVVMA Sbjct: 4 GEQVDGKRRTLIQGAGLAA-TGALGLAGRGAWAAGSDKPEKEEVKIGFIPLTDCASVVMA 62 Query: 158 SVLGFDKKYGIKIVPSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAVL 217 SVLG DKKYGIKI+PSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAVL Sbjct: 63 SVLGLDKKYGIKIIPSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAVL 122 Query: 218 MGLNHNGQAITLSKKLADKGAVDGASLYKLMQTDKREYTFAQTFPTGTHAMWLYYWLAAN 277 MGLNHNGQAITLS+KLADKGAVDGASLYKLMQTDKREYTFAQTFPTGTHAMWLYYWLAAN Sbjct: 123 MGLNHNGQAITLSRKLADKGAVDGASLYKLMQTDKREYTFAQTFPTGTHAMWLYYWLAAN 182 Query: 278 GINPMKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITAITTQDIWKDHP 337 GINPMKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITA TTQDIWKDHP Sbjct: 183 GINPMKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITATTTQDIWKDHP 242 Query: 338 EKVLGTSLEFVQKYPNTCRAMMAAILEASKWIDASLANKNKMAEVIADKSYVNTSKDVID 397 EKVLG+SLEFV+KYPNTCRAMMAAILEASKWIDASL NKN+MAEVIADKSYVNTSKDVID Sbjct: 243 EKVLGSSLEFVKKYPNTCRAMMAAILEASKWIDASLTNKNRMAEVIADKSYVNTSKDVID 302 Query: 398 QRILGRYQNGLGKTWDDPNYMKFYDEGQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAVA 457 QRILGRYQNGLGKTWDDPNYMKFY++GQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAVA Sbjct: 303 QRILGRYQNGLGKTWDDPNYMKFYEDGQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAVA 362 Query: 458 KSVNQIDLYKDAAAMTKTPLPKEVMRSSKLMDGTVWDGKNPAAYAASFKIK 508 K+VNQIDLYK AAAMT TPLPK+ MRSS+LMDG VWDGKNPAAYA SFKIK Sbjct: 363 KAVNQIDLYKQAAAMTGTPLPKDSMRSSRLMDGVVWDGKNPAAYAQSFKIK 413 >ref|YP_004754621.1| nitrate ABC transporter nitrate-binding protein [Collimonas fungivorans Ter331] gb|AEK63798.1| Nitrate ABC transporter, nitrate-binding protein [Collimonas fungivorans Ter331] Length = 432 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 358/411 (87%), Positives = 383/411 (93%), Gaps = 2/411 (0%) Query: 101 VDGKRRTLLQGGALAAGSGMLGM--LPGGAWAAGSDKPEKEEVKIGFIPLTDCASVVMAS 158 VDGKRR LLQ LAAG+ MLG+ GAWAAGSDKPEK E+KIGFIPLTDCASVVMAS Sbjct: 22 VDGKRRQLLQTATLAAGASMLGLSSTATGAWAAGSDKPEKTEIKIGFIPLTDCASVVMAS 81 Query: 159 VLGFDKKYGIKIVPSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAVLM 218 +LGFDKKYGIKIV SKEASWAGVRDKL NGELDAAHVL GLIYGVQ+GIGGQKKDMA+LM Sbjct: 82 LLGFDKKYGIKIVLSKEASWAGVRDKLANGELDAAHVLSGLIYGVQMGIGGQKKDMAILM 141 Query: 219 GLNHNGQAITLSKKLADKGAVDGASLYKLMQTDKREYTFAQTFPTGTHAMWLYYWLAANG 278 GLN+NGQAITLSKKLADKGAVDG SL KLM +DKREYTFAQTFPTGTHAMWLYYWLAANG Sbjct: 142 GLNNNGQAITLSKKLADKGAVDGPSLAKLMASDKREYTFAQTFPTGTHAMWLYYWLAANG 201 Query: 279 INPMKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITAITTQDIWKDHPE 338 +NP+KDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITAITTQ+IWKDHPE Sbjct: 202 VNPLKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITAITTQEIWKDHPE 261 Query: 339 KVLGTSLEFVQKYPNTCRAMMAAILEASKWIDASLANKNKMAEVIADKSYVNTSKDVIDQ 398 KVLGT+ EF K PNTCRA++AA+LEA KWIDASLANKNKMAE IADKSYVNTSKDVIDQ Sbjct: 262 KVLGTTAEFAAKNPNTCRALIAAVLEAGKWIDASLANKNKMAEAIADKSYVNTSKDVIDQ 321 Query: 399 RILGRYQNGLGKTWDDPNYMKFYDEGQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAVAK 458 RI+GRYQNGLGKTWDDPNYMKFY++G VNFP+LSDGMWFMTQHRRWGLLK+DPDYLAVAK Sbjct: 322 RIMGRYQNGLGKTWDDPNYMKFYNDGLVNFPYLSDGMWFMTQHRRWGLLKTDPDYLAVAK 381 Query: 459 SVNQIDLYKDAAAMTKTPLPKEVMRSSKLMDGTVWDGKNPAAYAASFKIKA 509 SV+QI LYKDAAAMT TP+PK+ +R+SKLMDGTVWDGKNPAAYAASFKI A Sbjct: 382 SVSQIALYKDAAAMTNTPVPKDALRTSKLMDGTVWDGKNPAAYAASFKIHA 432 >ref|ZP_08274284.1| Nitrate ABC transporter, nitrate-binding protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF32257.1| Nitrate ABC transporter, nitrate-binding protein [Oxalobacteraceae bacterium IMCC9480] Length = 416 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 338/408 (82%), Positives = 371/408 (90%) Query: 102 DGKRRTLLQGGALAAGSGMLGMLPGGAWAAGSDKPEKEEVKIGFIPLTDCASVVMASVLG 161 D RR++++ GALA G+ G WAAGSDKPEKEEVK+GFIPLTDCASVVMASVLG Sbjct: 9 DLTRRSVIKAGALAGAGIFGGLATQGVWAAGSDKPEKEEVKVGFIPLTDCASVVMASVLG 68 Query: 162 FDKKYGIKIVPSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAVLMGLN 221 FDKKYGIKIVP+KE+SWA VRDKL NGELDAAH LYGLIYGV LG GG KKDMAVLM +N Sbjct: 69 FDKKYGIKIVPTKESSWASVRDKLANGELDAAHALYGLIYGVHLGNGGAKKDMAVLMTIN 128 Query: 222 HNGQAITLSKKLADKGAVDGASLYKLMQTDKREYTFAQTFPTGTHAMWLYYWLAANGINP 281 NGQAITLSKKLADKGAVDGASL KLMQT+KREYTFAQTFPTGTHAMWLYYWLAANGI+P Sbjct: 129 QNGQAITLSKKLADKGAVDGASLAKLMQTEKREYTFAQTFPTGTHAMWLYYWLAANGIDP 188 Query: 282 MKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITAITTQDIWKDHPEKVL 341 MKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITAITTQDIWKDHPEKVL Sbjct: 189 MKDAKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITAITTQDIWKDHPEKVL 248 Query: 342 GTSLEFVQKYPNTCRAMMAAILEASKWIDASLANKNKMAEVIADKSYVNTSKDVIDQRIL 401 GT+ E+V+KYPNT RA+ AA+L+AS+WIDASL+NKNKMA+ IA+KSYVNTS DVI+QRIL Sbjct: 249 GTTAEWVKKYPNTARALTAAVLDASRWIDASLSNKNKMADTIAEKSYVNTSVDVINQRIL 308 Query: 402 GRYQNGLGKTWDDPNYMKFYDEGQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAVAKSVN 461 GRYQNGLGKTWDDPN M F+ +G VNFP+LSDGMWF+TQH+RWGLLK+D DYLAVAK++N Sbjct: 309 GRYQNGLGKTWDDPNCMHFFQDGAVNFPYLSDGMWFLTQHKRWGLLKADVDYLAVAKAIN 368 Query: 462 QIDLYKDAAAMTKTPLPKEVMRSSKLMDGTVWDGKNPAAYAASFKIKA 509 QID+YKDAAAM K +PK+ MRSSKLMDGTVWDGKNP AYAASFKIKA Sbjct: 369 QIDVYKDAAAMAKVSVPKDTMRSSKLMDGTVWDGKNPQAYAASFKIKA 416 >ref|YP_001352170.1| nitrate transport system substrate-binding protein [Janthinobacterium sp. Marseille] gb|ABR88274.1| nitrate transport system substrate-binding protein [Janthinobacterium sp. Marseille] Length = 407 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 326/405 (80%), Positives = 358/405 (88%) Query: 105 RRTLLQGGALAAGSGMLGMLPGGAWAAGSDKPEKEEVKIGFIPLTDCASVVMASVLGFDK 164 RRT+L+ GA + G+ G WAAGSDKPEKEEVKIGFIPLTDCASVVMASV+GFDK Sbjct: 3 RRTILKAGATITATAFSGLATQGVWAAGSDKPEKEEVKIGFIPLTDCASVVMASVMGFDK 62 Query: 165 KYGIKIVPSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAVLMGLNHNG 224 KYGIKIVP+KEASWAGVRDKL NGELDAAHVLYGL+YGV GIGG KKDMAVLMGLN+NG Sbjct: 63 KYGIKIVPTKEASWAGVRDKLVNGELDAAHVLYGLVYGVHEGIGGAKKDMAVLMGLNNNG 122 Query: 225 QAITLSKKLADKGAVDGASLYKLMQTDKREYTFAQTFPTGTHAMWLYYWLAANGINPMKD 284 QAITLSKKLA+ GA+DG L KLMQ +KREYTFAQTFPTGTHAMWLYYWLA GINPMKD Sbjct: 123 QAITLSKKLAEGGAIDGPGLAKLMQMEKREYTFAQTFPTGTHAMWLYYWLATYGINPMKD 182 Query: 285 AKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITAITTQDIWKDHPEKVLGTS 344 AKVITVPPPQMVANMRVGNMDG+CVGEPW HRAIVDG+GITA TTQDIWKDHPEKVLGT+ Sbjct: 183 AKVITVPPPQMVANMRVGNMDGYCVGEPWNHRAIVDGIGITAATTQDIWKDHPEKVLGTT 242 Query: 345 LEFVQKYPNTCRAMMAAILEASKWIDASLANKNKMAEVIADKSYVNTSKDVIDQRILGRY 404 ++V K PNT RA+ AA+LEA +WID+SL+NKNKMAEVIA KSYVNTS DVI+QRILGRY Sbjct: 243 SDWVAKNPNTARALTAAVLEAGRWIDSSLSNKNKMAEVIAAKSYVNTSVDVINQRILGRY 302 Query: 405 QNGLGKTWDDPNYMKFYDEGQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAVAKSVNQID 464 QNGLGKTWDDPNYMKFY++GQ NFP+LSDGMWFMTQH+RWGL K +PDYL AKSVN+ID Sbjct: 303 QNGLGKTWDDPNYMKFYNDGQANFPYLSDGMWFMTQHKRWGLAKGEPDYLGTAKSVNRID 362 Query: 465 LYKDAAAMTKTPLPKEVMRSSKLMDGTVWDGKNPAAYAASFKIKA 509 LYK+AA + P+PK MRSSKL+DG VWDGKNP AYA SFKIKA Sbjct: 363 LYKEAATLANVPVPKSPMRSSKLIDGVVWDGKNPKAYAESFKIKA 407 >ref|YP_001098775.1| putative nitrate transporter NrtA [Herminiimonas arsenicoxydans] emb|CAL60646.1| Nitrate transporter component [Herminiimonas arsenicoxydans] Length = 416 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 326/405 (80%), Positives = 359/405 (88%) Query: 105 RRTLLQGGALAAGSGMLGMLPGGAWAAGSDKPEKEEVKIGFIPLTDCASVVMASVLGFDK 164 RRT+L+ G S G+ G WAAGSDKPEKEEVK+GFIPLTDCASVVMASV+GFDK Sbjct: 12 RRTVLKAGTAITASAFGGLATQGVWAAGSDKPEKEEVKVGFIPLTDCASVVMASVMGFDK 71 Query: 165 KYGIKIVPSKEASWAGVRDKLTNGELDAAHVLYGLIYGVQLGIGGQKKDMAVLMGLNHNG 224 KYGIKIVP+KE+SWAGVRDKL NGELDAAHVLYGLIYGV GIGG KKDMAVLM +N+NG Sbjct: 72 KYGIKIVPTKESSWAGVRDKLVNGELDAAHVLYGLIYGVHGGIGGAKKDMAVLMSINNNG 131 Query: 225 QAITLSKKLADKGAVDGASLYKLMQTDKREYTFAQTFPTGTHAMWLYYWLAANGINPMKD 284 QAI+LSKKLADKGAV+GA L KLMQ +KREYTFAQTFPTGTHAMWLYYWLA GINPMKD Sbjct: 132 QAISLSKKLADKGAVNGAGLAKLMQMEKREYTFAQTFPTGTHAMWLYYWLATYGINPMKD 191 Query: 285 AKVITVPPPQMVANMRVGNMDGFCVGEPWGHRAIVDGVGITAITTQDIWKDHPEKVLGTS 344 AKVITVPPPQMVANMRVGNMDGFCVGEPW HRAIVDG+GITA T+QDIWKDHPEKVLGT+ Sbjct: 192 AKVITVPPPQMVANMRVGNMDGFCVGEPWNHRAIVDGIGITAATSQDIWKDHPEKVLGTT 251 Query: 345 LEFVQKYPNTCRAMMAAILEASKWIDASLANKNKMAEVIADKSYVNTSKDVIDQRILGRY 404 E+V KYPNT RAM AA+LEAS+WIDASL+NKNKMAE IA KSYVNTS DVI+QRILGRY Sbjct: 252 SEWVAKYPNTARAMTAAVLEASRWIDASLSNKNKMAETIAAKSYVNTSVDVINQRILGRY 311 Query: 405 QNGLGKTWDDPNYMKFYDEGQVNFPFLSDGMWFMTQHRRWGLLKSDPDYLAVAKSVNQID 464 +G+GKTWDDPNYMKFY++G VNFP+LSDGMWFMTQH+RWGL K +PDY+ AKS+N+ID Sbjct: 312 SDGMGKTWDDPNYMKFYNDGAVNFPYLSDGMWFMTQHKRWGLAKGEPDYMGTAKSINRID 371 Query: 465 LYKDAAAMTKTPLPKEVMRSSKLMDGTVWDGKNPAAYAASFKIKA 509 LYK+AA M P+PK VMRSSKL+DG VWDGKNP AYA SFKIKA Sbjct: 372 LYKEAATMANVPVPKNVMRSSKLIDGVVWDGKNPKAYAESFKIKA 416