BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1078.p         (115 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774630.1| hypothetical protein Hsero_1205 [Herbaspiril...    92   3e-17
ref|YP_004754118.1| hypothetical protein CFU_3471 [Collimonas fu...    56   2e-06

>ref|YP_003774630.1| hypothetical protein Hsero_1205 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62722.1| hypothetical protein Hsero_1205 [Herbaspirillum seropedicae SmR1]
          Length = 110

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 67/103 (65%), Positives = 76/103 (73%), Gaps = 1/103 (0%)

Query: 6   MNNKLLASSLLGALAALALH-VGTVHAADQKLVNGDPARWYQADDSPKARLRNLNQETAA 64
           MN KLLA  LL  LA L L     VHAAD    + DPARWYQADD+PKARLRNLNQETAA
Sbjct: 1   MNKKLLAPVLLSCLATLGLSSTAAVHAADTPQASPDPARWYQADDTPKARLRNLNQETAA 60

Query: 65  AYGQALQDCKALRGKAARACRQQAGAARKDDAARAQRIYQDYK 107
           AY +AL  CK+L+GK A ACR +A  ARKDD ARA+RI+ DY+
Sbjct: 61  AYAEALAACKSLKGKKAAACRHEAQQARKDDTARAKRIHDDYE 103


>ref|YP_004754118.1| hypothetical protein CFU_3471 [Collimonas fungivorans Ter331]
 gb|AEK63295.1| hypothetical protein CFU_3471 [Collimonas fungivorans Ter331]
          Length = 100

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 3/97 (3%)

Query: 6   MNNKLLASSLLGALAALALHVGTVHAADQKLVNGDPARWYQADDSPKARLRNLNQETAAA 65
           M  K L  SL  A  A ALH     AA++ +   DP RW   D +P+AR + + +E   A
Sbjct: 3   MQLKPLWLSLFIAANAFALHAS---AAEENVQYKDPPRWRVEDRTPQARFQTMKKENTNA 59

Query: 66  YGQALQDCKALRGKAARACRQQAGAARKDDAARAQRI 102
           Y QAL DC+A+RG+AA  CR+ A      D  RA+ +
Sbjct: 60  YAQALNDCRAMRGRAAGDCRKDARMNFDRDMQRAREM 96