BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1075.p         (56 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001050505.1| CsbD family protein [Shewanella baltica OS15...    64   7e-09
ref|YP_003774627.1| hypothetical protein Hsero_1202 [Herbaspiril...    57   1e-06

>ref|YP_001050505.1| CsbD family protein [Shewanella baltica OS155]
 gb|ABN61636.1| CsbD family protein [Shewanella baltica OS155]
          Length = 109

 Score = 63.9 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 43/56 (76%)

Query: 1   MNKDQIKGSLKEVAGKVQEKTGELTGNTSQQVKGAAKQVEGNVQKTYGDAKEAAKD 56
           MNKD I+GS+K+ AGK Q+K GE+ GN  QQVKG  KQ++G  QKT G+ KEAAKD
Sbjct: 49  MNKDLIEGSIKDAAGKAQQKIGEIVGNPKQQVKGVQKQIKGKTQKTMGNVKEAAKD 104


>ref|YP_003774627.1| hypothetical protein Hsero_1202 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62719.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 56

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/56 (89%), Positives = 54/56 (96%)

Query: 1  MNKDQIKGSLKEVAGKVQEKTGELTGNTSQQVKGAAKQVEGNVQKTYGDAKEAAKD 56
          MNKDQ+KGSLKE AGKVQEKTGELTGN SQ++KGAA+QVEGNVQKTYGDAKEAAKD
Sbjct: 1  MNKDQVKGSLKEAAGKVQEKTGELTGNKSQELKGAARQVEGNVQKTYGDAKEAAKD 56