BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1073.p (165 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774625.1| CheY-like response regulator receiver domain... 281 2e-74 ref|YP_004754071.1| putative response regulator receiver domain-... 128 2e-28 ref|YP_001354300.1| CheY-like domain-containing protein [Janthin... 118 3e-25 ref|YP_001100768.1| response regulator [Herminiimonas arsenicoxy... 116 1e-24 ref|ZP_08272829.1| Putative response regulator receiver domain p... 116 1e-24 >ref|YP_003774625.1| CheY-like response regulator receiver domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ62717.1| CheY-like response regulator receiver domain protein [Herbaspirillum seropedicae SmR1] Length = 169 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 148/165 (89%), Positives = 159/165 (96%), Gaps = 1/165 (0%) Query: 1 MDDNLNSRAQRDSDGTPLRIFLVEDSEDVRDLIVESLSEIAGVRLVGYAETELEALRHLQ 60 MDD LN+R QRDS+GTPLRIFLVEDSEDVRDLIVESL+EI GVRLVGYAETE++ALRHLQ Sbjct: 6 MDDTLNTRPQRDSEGTPLRIFLVEDSEDVRDLIVESLAEIGGVRLVGYAETEMDALRHLQ 65 Query: 61 QNSYDVLILDIQLKQGNGMSLLQSLARSNTRRQSEVKVVFSNHVSPTYRRVGVQCGVQHF 120 Q+SYDVLILDIQLKQGNGMSLLQ+LARSNTRRQSE+KVVFSNHVSPTYRRVGVQCGVQHF Sbjct: 66 QHSYDVLILDIQLKQGNGMSLLQALARSNTRRQSEIKVVFSNHVSPTYRRVGVQCGVQHF 125 Query: 121 FDKSSELPLLCDLLEELAQKRAGKLGRTSSSNNTPPQGPAQTGGM 165 FDKSSELPLLCDLLEELAQ+RAGK GRTSSSNN+ PQGPAQ GG+ Sbjct: 126 FDKSSELPLLCDLLEELAQQRAGKAGRTSSSNNS-PQGPAQAGGI 169 >ref|YP_004754071.1| putative response regulator receiver domain-containing protein [Collimonas fungivorans Ter331] gb|AEK63248.1| Putative response regulator receiver domain protein [Collimonas fungivorans Ter331] Length = 142 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 68/126 (53%), Positives = 91/126 (72%), Gaps = 1/126 (0%) Query: 13 SDGTPLRIFLVEDSEDVRDLIVESLSEIAGVRLVGYAETELEALRHLQQNSYDVLILDIQ 72 S TPLRIFLVEDS VR+L++++LSEI GV G+AE E +AL+ + +DVLILDI+ Sbjct: 12 SGATPLRIFLVEDSAAVRNLMIDTLSEIPGVVFAGFAEGEGDALKKIDAEPFDVLILDIE 71 Query: 73 LKQGNGMSLLQSLARSNTRRQSEVKVVFSNHVSPTYRRVGVQCGVQHFFDKSSELPLLCD 132 LK+GNGMSLL++LA ++ S +K++FSN+VS +R G + GV+ FFDKSSE L D Sbjct: 72 LKEGNGMSLLRTLAEAHKPLNS-LKIIFSNNVSNAFRNAGAKYGVRFFFDKSSEFTQLRD 130 Query: 133 LLEELA 138 LL L Sbjct: 131 LLAALG 136 >ref|YP_001354300.1| CheY-like domain-containing protein [Janthinobacterium sp. Marseille] gb|ABR91314.1| CheY-like response regulator receiver domain protein [Janthinobacterium sp. Marseille] Length = 144 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 64/131 (48%), Positives = 93/131 (70%), Gaps = 1/131 (0%) Query: 17 PLRIFLVEDSEDVRDLIVESLSEIAGVRLVGYAETELEALRHLQQNSYDVLILDIQLKQG 76 PLRIFLVEDS DVR+L++E+L+ I GV + G +E+E +AL L DVLI+DIQLK+G Sbjct: 14 PLRIFLVEDSLDVRELMIENLAMIPGVVVAGVSESEGDALNQLNALPCDVLIVDIQLKKG 73 Query: 77 NGMSLLQSLARSNTRRQSEVKVVFSNHVSPTYRRVGVQCGVQHFFDKSSELPLLCDLLEE 136 NG++LL+ ++ T+ + +K++ SN+ + +RRVG Q GV HFFDK+SE P L +L++ Sbjct: 74 NGINLLRQISE-KTKISNTLKIICSNNATEVFRRVGRQYGVNHFFDKTSEFPQLFELVKN 132 Query: 137 LAQKRAGKLGR 147 L+ R GR Sbjct: 133 LSCARLEYNGR 143 >ref|YP_001100768.1| response regulator [Herminiimonas arsenicoxydans] emb|CAL62647.1| Putative two-component response regulator CheY-like [Herminiimonas arsenicoxydans] Length = 141 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 64/128 (50%), Positives = 92/128 (71%), Gaps = 4/128 (3%) Query: 12 DSDGTPLRIFLVEDSEDVRDLIVESLSEIAGVRLVGYAETELEALRHLQQNSYDVLILDI 71 D+ PL IFLVEDS DVR+L++E+L+ I GV + G +E+E +AL L D+LI+DI Sbjct: 7 DAGCNPLHIFLVEDSLDVRELMIENLAMIPGVVVSGVSESESDALAQLDMQPCDILIVDI 66 Query: 72 QLKQGNGMSLLQSLARSNTRRQSE-VKVVFSNHVSPTYRRVGVQCGVQHFFDKSSELPLL 130 QLK+GNG++LL+ L+ RR S+ VK++ SN+ + +RRVG Q GV HFFDK+SE P L Sbjct: 67 QLKKGNGINLLRQLSE---RRTSDLVKIICSNNSTEIFRRVGRQYGVDHFFDKTSEFPQL 123 Query: 131 CDLLEELA 138 +L+ +L+ Sbjct: 124 FNLVRDLS 131 >ref|ZP_08272829.1| Putative response regulator receiver domain protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33699.1| Putative response regulator receiver domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 140 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 58/122 (47%), Positives = 92/122 (75%), Gaps = 1/122 (0%) Query: 17 PLRIFLVEDSEDVRDLIVESLSEIAGVRLVGYAETELEALRHLQQNSYDVLILDIQLKQG 76 PL++FL+EDS VR+L++ES ++I G+ L+G+A++E EA L++ D+LILDIQL+QG Sbjct: 8 PLQVFLIEDSSLVRELVIESFADIPGITLIGHADSEDEAFDQLERQRCDILILDIQLRQG 67 Query: 77 NGMSLLQSLARSNTRRQSEVKVVFSNHVSPTYRRVGVQCGVQHFFDKSSELPLLCDLLEE 136 NG++LL+ L S ++ +++++FSN+VS Y R+ Q GVQ+FFDK+SE + +LLE+ Sbjct: 68 NGINLLRRLG-SQPQQNKQIRIIFSNNVSKGYHRLAGQLGVQYFFDKTSEFTDMRELLEQ 126 Query: 137 LA 138 L Sbjct: 127 LG 128