BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1072.p         (209 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774624.1| virulence regulator protein [Herbaspirillum ...   395   e-108
ref|ZP_08272828.1| two component transcriptional regulator, LuxR...   347   5e-94
ref|YP_001354299.1| LuxR family DNA-binding response regulator [...   331   3e-89
ref|YP_001100767.1| response regulator [Herminiimonas arsenicoxy...   328   3e-88
ref|YP_004754072.1| response regulator protein VsrD (LuxRfamily)...   324   4e-87

>ref|YP_003774624.1| virulence regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62716.1| virulence regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 209/209 (100%), Positives = 209/209 (100%)

Query: 1   MTKILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60
           MTKILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK
Sbjct: 1   MTKILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60

Query: 61  SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR 120
           SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR
Sbjct: 61  SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR 120

Query: 121 GHKYISYGVAELLTSEPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVS 180
           GHKYISYGVAELLTSEPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVS
Sbjct: 121 GHKYISYGVAELLTSEPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVS 180

Query: 181 TYRSRVLQKMSMTNNADIIYYAIKNNLID 209
           TYRSRVLQKMSMTNNADIIYYAIKNNLID
Sbjct: 181 TYRSRVLQKMSMTNNADIIYYAIKNNLID 209


>ref|ZP_08272828.1| two component transcriptional regulator, LuxR family
           [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33698.1| two component transcriptional regulator, LuxR family
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 210

 Score =  347 bits (891), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 178/210 (84%), Positives = 198/210 (94%), Gaps = 1/210 (0%)

Query: 1   MTKILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60
           MT+ILVVDDHAVVRAGVH+FI +IP MEIGGEA TAEEAIRL+R +DWDIV+LDIAMPDK
Sbjct: 1   MTRILVVDDHAVVRAGVHYFIDDIPDMEIGGEAGTAEEAIRLIRAEDWDIVVLDIAMPDK 60

Query: 61  SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR 120
           SGVEVLKQIKREKP+LPVL+LSMHPE+RYAVQ+LRSGASGYVQKEALATELVNAI TI+R
Sbjct: 61  SGVEVLKQIKREKPDLPVLILSMHPENRYAVQILRSGASGYVQKEALATELVNAIQTIMR 120

Query: 121 GHKYISYGVAELLTSEP-VDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTV 179
           GHKYISY VAELLT +P  +++KPLHETLS REYEIFYKL QG+GVT+IADELCLSVKTV
Sbjct: 121 GHKYISYAVAELLTMDPDTNADKPLHETLSAREYEIFYKLSQGEGVTKIADELCLSVKTV 180

Query: 180 STYRSRVLQKMSMTNNADIIYYAIKNNLID 209
           STYR+RVLQKM+MT+NADIIYYAIK NLID
Sbjct: 181 STYRARVLQKMNMTSNADIIYYAIKQNLID 210


>ref|YP_001354299.1| LuxR family DNA-binding response regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR89951.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp.
           Marseille]
          Length = 210

 Score =  331 bits (849), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 176/210 (83%), Positives = 192/210 (91%), Gaps = 1/210 (0%)

Query: 1   MTKILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60
           M KILVVDDHAVVRAGV +FI+++P M+I GEA+TA+EAIRLVR QDWDIVLLDI MPDK
Sbjct: 1   MIKILVVDDHAVVRAGVQYFIAQVPDMKIEGEAATAQEAIRLVRAQDWDIVLLDINMPDK 60

Query: 61  SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR 120
           SGVEVLKQIKREKPELPVL+LSMHPESRYAVQ+LRSGASGYVQKEALA ELVNAI TILR
Sbjct: 61  SGVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVNAIQTILR 120

Query: 121 GHKYISYGVAELLTSE-PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTV 179
           GHKYIS+ VAELLT+E    +EKPLHETLS+REYEIFYKL QG GVT+IADELCLSVKTV
Sbjct: 121 GHKYISHTVAELLTTELDTSTEKPLHETLSKREYEIFYKLCQGHGVTKIADELCLSVKTV 180

Query: 180 STYRSRVLQKMSMTNNADIIYYAIKNNLID 209
           STYR+RVLQKM+M NNA IIYYAIK NLID
Sbjct: 181 STYRARVLQKMNMENNAGIIYYAIKQNLID 210


>ref|YP_001100767.1| response regulator [Herminiimonas arsenicoxydans]
 emb|CAL62646.1| Response regulator receiver, LuxR family [Herminiimonas
           arsenicoxydans]
          Length = 210

 Score =  328 bits (842), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 174/210 (82%), Positives = 191/210 (90%), Gaps = 1/210 (0%)

Query: 1   MTKILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60
           M KILVVDDHAVVRAGV +FI+++P M I GEA+TA+EAIRLVR QDWDIVLLDI MPDK
Sbjct: 1   MIKILVVDDHAVVRAGVQYFIAQVPDMCIEGEAATAQEAIRLVRAQDWDIVLLDINMPDK 60

Query: 61  SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR 120
           SGVEVLKQIKREKPELPVL+LSMHPESRYAVQ+LRSGASGYVQKEALA ELV AI TILR
Sbjct: 61  SGVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVTAIQTILR 120

Query: 121 GHKYISYGVAELLTSE-PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTV 179
           GHKYIS+ VAELLT+E   +++KPLHETLS+REYEIFYKL QG GVT+IADELCLSVKTV
Sbjct: 121 GHKYISHTVAELLTAEVDPNADKPLHETLSKREYEIFYKLCQGHGVTKIADELCLSVKTV 180

Query: 180 STYRSRVLQKMSMTNNADIIYYAIKNNLID 209
           STYR+RVLQKM+M NNA IIYYAIK NLID
Sbjct: 181 STYRARVLQKMNMENNAGIIYYAIKQNLID 210


>ref|YP_004754072.1| response regulator protein VsrD (LuxRfamily) [Collimonas
           fungivorans Ter331]
 gb|AEK63249.1| Response regulator protein VsrD (LuxRfamily) [Collimonas
           fungivorans Ter331]
          Length = 210

 Score =  324 bits (831), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 172/210 (81%), Positives = 192/210 (91%), Gaps = 1/210 (0%)

Query: 1   MTKILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDK 60
           M KILVVDDHAVVRAGV +FI++IP MEI GEA+ A+EAIRL+R+QD+DIVLLDIAMPDK
Sbjct: 1   MIKILVVDDHAVVRAGVQYFIADIPEMEITGEAANAQEAIRLIRSQDYDIVLLDIAMPDK 60

Query: 61  SGVEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILR 120
           SGVEVLKQIKREKP LPVL+LSMHPESRYAVQVLRSGA GYVQKEALA ELV AI T+L+
Sbjct: 61  SGVEVLKQIKREKPLLPVLILSMHPESRYAVQVLRSGADGYVQKEALAIELVKAIETVLQ 120

Query: 121 GHKYISYGVAELLTSEPVDSEK-PLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTV 179
           GHKYISY VAELLT++P  +E  PLHETLS REYEIFYKL QG+GVT+IA+ELCLSVKT+
Sbjct: 121 GHKYISYAVAELLTADPASNENTPLHETLSAREYEIFYKLSQGEGVTKIAEELCLSVKTI 180

Query: 180 STYRSRVLQKMSMTNNADIIYYAIKNNLID 209
           STYR+RVLQKMSM +NADIIYYAIKNNLID
Sbjct: 181 STYRTRVLQKMSMASNADIIYYAIKNNLID 210