BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1071.p         (109 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774623.1| periplasmic or secreted lipoprotein [Herbasp...   177   4e-43
ref|YP_746733.1| transport-associated [Nitrosomonas eutropha C91...   131   3e-29
ref|YP_004681482.1| transporter [Cupriavidus necator N-1] >gi|33...   127   7e-28
ref|ZP_08779648.1| transport-associated protein [Methylobacter t...   121   4e-26
ref|ZP_08272712.1| transport-associated protein [Oxalobacteracea...   121   4e-26

>ref|YP_003774623.1| periplasmic or secreted lipoprotein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ62715.1| periplasmic or secreted lipoprotein [Herbaspirillum seropedicae
           SmR1]
          Length = 109

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 102/109 (93%), Positives = 105/109 (96%)

Query: 1   MSLTKMSLTKRFLGFFLALFMVSLVGCASSPGKEGTGEYVDDAVITTKVKAAIFNEPNLK 60
           MSLTKMSLTKRF+GFFLALFMVSLVGCAS P KEGTGEYVDDAVITTKVKAAIFNE +LK
Sbjct: 1   MSLTKMSLTKRFIGFFLALFMVSLVGCASGPNKEGTGEYVDDAVITTKVKAAIFNEKDLK 60

Query: 61  SAEINVETYKGVVQLSGFVSSSTSAARATELARGVKGVVSVRNDLRLKQ 109
           S EINVETYKGVVQLSGFVSSST+AARATELARGVKGVVSVRNDLRLKQ
Sbjct: 61  STEINVETYKGVVQLSGFVSSSTAAARATELARGVKGVVSVRNDLRLKQ 109


>ref|YP_746733.1| transport-associated [Nitrosomonas eutropha C91]
 gb|ABI58768.1| transport-associated protein [Nitrosomonas eutropha C91]
          Length = 104

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/101 (71%), Positives = 81/101 (80%)

Query: 8   LTKRFLGFFLALFMVSLVGCASSPGKEGTGEYVDDAVITTKVKAAIFNEPNLKSAEINVE 67
           L   F  FFL L MVSL+GCAS+  + GTGEY+DD VITTKVKAAIFNEP LKSAEINVE
Sbjct: 4   LNNHFFTFFLTLLMVSLLGCASTAKQSGTGEYLDDTVITTKVKAAIFNEPILKSAEINVE 63

Query: 68  TYKGVVQLSGFVSSSTSAARATELARGVKGVVSVRNDLRLK 108
           T+KGVVQLSGFVSS   A RA E+AR V GV SV+ND+R+K
Sbjct: 64  TFKGVVQLSGFVSSQVHANRAVEIARSVGGVKSVKNDMRIK 104


>ref|YP_004681482.1| transporter [Cupriavidus necator N-1]
 gb|AEI80250.1| transporter [Cupriavidus necator N-1]
          Length = 103

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 68/103 (66%), Positives = 82/103 (79%)

Query: 6   MSLTKRFLGFFLALFMVSLVGCASSPGKEGTGEYVDDAVITTKVKAAIFNEPNLKSAEIN 65
           M+   R   FFL + M   +GCAS+P +EGTGEYVDD V+TTKVKAA+ NEP LKSAEIN
Sbjct: 1   MTYLNRLSAFFLTVLMAFSLGCASTPKQEGTGEYVDDTVLTTKVKAAVLNEPTLKSAEIN 60

Query: 66  VETYKGVVQLSGFVSSSTSAARATELARGVKGVVSVRNDLRLK 108
           VET+KGVVQLSGFV S   A++A E+ARGVKGV SV+ND+R+K
Sbjct: 61  VETFKGVVQLSGFVRSQADASKAVEVARGVKGVKSVKNDMRIK 103


>ref|ZP_08779648.1| transport-associated protein [Methylobacter tundripaludum SV96]
 gb|EGW21823.1| transport-associated protein [Methylobacter tundripaludum SV96]
          Length = 104

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/101 (66%), Positives = 78/101 (77%)

Query: 8   LTKRFLGFFLALFMVSLVGCASSPGKEGTGEYVDDAVITTKVKAAIFNEPNLKSAEINVE 67
           L + F  FFL L ++S  GCAS+   EGTGEYVDD+VITTKVK AI NEP L SAEINVE
Sbjct: 4   LIRVFSAFFLTLTLLSAAGCASTEKHEGTGEYVDDSVITTKVKTAILNEPGLSSAEINVE 63

Query: 68  TYKGVVQLSGFVSSSTSAARATELARGVKGVVSVRNDLRLK 108
           T+KGVVQLSGFV+S     +A E+AR VKGV SV+ND+RLK
Sbjct: 64  TFKGVVQLSGFVTSRADINKAIEIARNVKGVNSVKNDMRLK 104


>ref|ZP_08272712.1| transport-associated protein [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33816.1| transport-associated protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 103

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/103 (66%), Positives = 82/103 (79%)

Query: 6   MSLTKRFLGFFLALFMVSLVGCASSPGKEGTGEYVDDAVITTKVKAAIFNEPNLKSAEIN 65
           M  +KR   FFLA  ++++ GCAS+  KEGTGEYVDD VITTKVKAA+ NEP LKS EIN
Sbjct: 1   MIFSKRISTFFLAAALIAVAGCASTSTKEGTGEYVDDTVITTKVKAALLNEPALKSREIN 60

Query: 66  VETYKGVVQLSGFVSSSTSAARATELARGVKGVVSVRNDLRLK 108
           VET+KGVVQLSGFV++   A  A  LARGVKGV+SV+ND+R+K
Sbjct: 61  VETFKGVVQLSGFVANQADATMAATLARGVKGVMSVKNDIRMK 103