BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1070.p         (130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774622.1| hypothetical protein Hsero_1197 [Herbaspiril...   100   9e-20
gb|EFV85657.1| hypothetical protein HMPREF0005_05040 [Achromobac...    67   1e-09
gb|EGP43749.1| hypothetical protein AXXA_24525 [Achromobacter xy...    67   1e-09
ref|ZP_06687930.1| conserved hypothetical protein [Achromobacter...    64   6e-09
ref|YP_004754074.1| hypothetical protein CFU_3427 [Collimonas fu...    63   1e-08

>ref|YP_003774622.1| hypothetical protein Hsero_1197 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62714.1| Conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 125

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 111/125 (88%), Positives = 116/125 (92%)

Query: 6   MKKIIATMIFGAAAIGMHGAVFAADPAAAQYKADKSKADADYKMAKKKCGPLKGNDKDVC 65
           MKKIIATMIFG AAIGM GA FAADPA AQYKADK KADADYK AKKKCGP+KGNDKDVC
Sbjct: 1   MKKIIATMIFGVAAIGMQGAAFAADPAGAQYKADKKKADADYKTAKKKCGPMKGNDKDVC 60

Query: 66  EKEAKAAHESTIADAKAKRKGVEADKDAMKDKNDANYDVAKEKCDAMSGDAKDKCVANAK 125
           EKEAKAAHES +ADAKAKRKG EADKDA KDKNDANYDVAKEKCDAMSGDAKD+CVANAK
Sbjct: 61  EKEAKAAHESALADAKAKRKGAEADKDARKDKNDANYDVAKEKCDAMSGDAKDQCVANAK 120

Query: 126 AKFGK 130
           +K+GK
Sbjct: 121 SKYGK 125


>gb|EFV85657.1| hypothetical protein HMPREF0005_05040 [Achromobacter xylosoxidans
           C54]
          Length = 132

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/87 (54%), Positives = 64/87 (73%)

Query: 44  DADYKMAKKKCGPLKGNDKDVCEKEAKAAHESTIADAKAKRKGVEADKDAMKDKNDANYD 103
           D  YKM KK+C  +KGN KDVCE++A+A  +   ADAK+ ++  EA+ DA K +N+A+Y 
Sbjct: 46  DNQYKMDKKQCDAMKGNQKDVCEQQAQATRDKARADAKSGKEKAEANHDAAKARNEADYK 105

Query: 104 VAKEKCDAMSGDAKDKCVANAKAKFGK 130
           V KEKCDAMSG+AKD C+A+ K + GK
Sbjct: 106 VGKEKCDAMSGNAKDTCLADLKTRHGK 132


>gb|EGP43749.1| hypothetical protein AXXA_24525 [Achromobacter xylosoxidans AXX-A]
          Length = 127

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 65/87 (74%)

Query: 44  DADYKMAKKKCGPLKGNDKDVCEKEAKAAHESTIADAKAKRKGVEADKDAMKDKNDANYD 103
           D  YKM KK+C  +KGN KDVC+K+A+A  +   ADAKA ++  EA+ DA K +NDA+Y 
Sbjct: 41  DNQYKMDKKQCDAMKGNQKDVCQKQAEATRDKAKADAKAGKEKAEANHDAAKARNDADYK 100

Query: 104 VAKEKCDAMSGDAKDKCVANAKAKFGK 130
           V KEKCDAMSG+AKD C+A+ K ++GK
Sbjct: 101 VGKEKCDAMSGNAKDACMADLKTRYGK 127


>ref|ZP_06687930.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gb|EFF75174.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 127

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/87 (56%), Positives = 64/87 (73%)

Query: 44  DADYKMAKKKCGPLKGNDKDVCEKEAKAAHESTIADAKAKRKGVEADKDAMKDKNDANYD 103
           D+ YKM KK C  +KGN KDVC+K+A+A+ +   ADAKA +   EA+ DA K KNDA+Y 
Sbjct: 41  DSQYKMDKKACDAMKGNQKDVCQKQAEASRDKARADAKAGKAKAEANHDAAKTKNDADYK 100

Query: 104 VAKEKCDAMSGDAKDKCVANAKAKFGK 130
           V KEKCDAMSG+AKD C+A+ K ++ K
Sbjct: 101 VGKEKCDAMSGNAKDTCMADLKTRYNK 127


>ref|YP_004754074.1| hypothetical protein CFU_3427 [Collimonas fungivorans Ter331]
 gb|AEK63251.1| hypothetical protein CFU_3427 [Collimonas fungivorans Ter331]
          Length = 194

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/123 (52%), Positives = 77/123 (62%), Gaps = 1/123 (0%)

Query: 5   TMKKIIATMIFGAAAIGMHGAVFAADPAAAQYKADKSKADADYKMAKKKCGPLKGNDKDV 64
           T+ KI+ATM+ G A         AAD A A YKA +  ADA YK  K KC  L GN KDV
Sbjct: 13  TINKILATMLIGVAGFSGTSLALAADSAKASYKAAEDAADATYKADKAKCDELSGNGKDV 72

Query: 65  CEKEAKAAHESTIADAKAKRKGV-EADKDAMKDKNDANYDVAKEKCDAMSGDAKDKCVAN 123
           C K+AKA  E T  DAKA+ K   +A   A K + DA+Y VAKEKCDA++G+AKD CV  
Sbjct: 73  CLKQAKATREHTKQDAKAEYKNTPKAVAGARKSEADADYAVAKEKCDALAGNAKDVCVKQ 132

Query: 124 AKA 126
           AKA
Sbjct: 133 AKA 135



 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/93 (52%), Positives = 64/93 (68%)

Query: 38  ADKSKADADYKMAKKKCGPLKGNDKDVCEKEAKAAHESTIADAKAKRKGVEADKDAMKDK 97
           A KS+ADADY +AK+KC  L GN KDVC K+AKA   + +A+A  ++   +A  DA +++
Sbjct: 102 ARKSEADADYAVAKEKCDALAGNAKDVCVKQAKADQTNAVANANTQKDVSKAKADAREER 161

Query: 98  NDANYDVAKEKCDAMSGDAKDKCVANAKAKFGK 130
            DA Y VA  KCDA++G AKD CVA AKA  GK
Sbjct: 162 ADARYKVAMAKCDALAGAAKDDCVAAAKADAGK 194