BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1067.p         (171 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774619.1| transmembrane protein [Herbaspirillum serope...   222   1e-56
ref|YP_001101575.1| hypothetical protein HEAR3351 [Herminiimonas...   110   6e-23
emb|CAL63454.2| Conserved hypothetical protein [Herminiimonas ar...   100   6e-20
ref|YP_004754942.1| hypothetical protein CFU_4298 [Collimonas fu...    99   2e-19
ref|ZP_08275162.1| hypothetical protein IMCC9480_13 [Oxalobacter...    99   2e-19

>ref|YP_003774619.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62711.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  222 bits (566), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 129/144 (89%), Positives = 137/144 (95%)

Query: 28  MASGCTGADADRAAVPDVSTLRRGWHGRLDQTVTHTRRPSMQANKFKTARTDVQSLLQQA 87
           MASGC GADADR+A+P VSTLRRGWHGRLDQ  T++ R SMQANKFKT RTDVQSLLQQA
Sbjct: 1   MASGCAGADADRSAIPHVSTLRRGWHGRLDQPETNSWRASMQANKFKTVRTDVQSLLQQA 60

Query: 88  QDLFAEAANATGKKADDLRASAQDLLEQALNTAQDAQAAVVETGRQIVTSTDDYVQSNPW 147
           QD+FAEAANATGKKADDLRASAQ+LLEQALNTAQDAQAAVV+TGRQIVT+TDDYVQSNPW
Sbjct: 61  QDMFAEAANATGKKADDLRASAQELLEQALNTAQDAQAAVVDTGRQIVTTTDDYVQSNPW 120

Query: 148 RAIAIGTGIGLLVGLAVGRCADRY 171
           RAIAIGTGIGLLVGLAVGRCADRY
Sbjct: 121 RAIAIGTGIGLLVGLAVGRCADRY 144


>ref|YP_001101575.1| hypothetical protein HEAR3351 [Herminiimonas arsenicoxydans]
          Length = 162

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/101 (51%), Positives = 75/101 (74%)

Query: 66  PSMQANKFKTARTDVQSLLQQAQDLFAEAANATGKKADDLRASAQDLLEQALNTAQDAQA 125
           P+M+A+  KT R+D+++L++ AQ+LF EA +ATG++AD+LR     LL+ AL  AQ+ Q 
Sbjct: 61  PTMKASTLKTTRSDMKTLVKDAQELFREATSATGERADELRHRGLQLLDSALTKAQEVQT 120

Query: 126 AVVETGRQIVTSTDDYVQSNPWRAIAIGTGIGLLVGLAVGR 166
           A +ETG++I   TDDYV  NPWRA+AI  G+G+LVGL + R
Sbjct: 121 AALETGKEIAEKTDDYVHENPWRAVAISAGVGVLVGLLISR 161


>emb|CAL63454.2| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 100

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/99 (51%), Positives = 73/99 (73%)

Query: 68  MQANKFKTARTDVQSLLQQAQDLFAEAANATGKKADDLRASAQDLLEQALNTAQDAQAAV 127
           M+A+  KT R+D+++L++ AQ+LF EA +ATG++AD+LR     LL+ AL  AQ+ Q A 
Sbjct: 1   MKASTLKTTRSDMKTLVKDAQELFREATSATGERADELRHRGLQLLDSALTKAQEVQTAA 60

Query: 128 VETGRQIVTSTDDYVQSNPWRAIAIGTGIGLLVGLAVGR 166
           +ETG++I   TDDYV  NPWRA+AI  G+G+LVGL + R
Sbjct: 61  LETGKEIAEKTDDYVHENPWRAVAISAGVGVLVGLLISR 99


>ref|YP_004754942.1| hypothetical protein CFU_4298 [Collimonas fungivorans Ter331]
 gb|AEK64119.1| hypothetical protein CFU_4298 [Collimonas fungivorans Ter331]
          Length = 99

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 70/90 (77%)

Query: 77  RTDVQSLLQQAQDLFAEAANATGKKADDLRASAQDLLEQALNTAQDAQAAVVETGRQIVT 136
           R+D +S+++ AQ+LF EAA  TG+KA+DLR    +LL+ A++ AQD QAA +E G++I  
Sbjct: 9   RSDFRSMVEDAQELFREAAATTGEKAEDLRDKGLELLDTAVSKAQDVQAAAIEAGKEIAA 68

Query: 137 STDDYVQSNPWRAIAIGTGIGLLVGLAVGR 166
           +TDDYVQ NPWRAIAI  GIGLLVGLA+ R
Sbjct: 69  TTDDYVQENPWRAIAISAGIGLLVGLAISR 98


>ref|ZP_08275162.1| hypothetical protein IMCC9480_13 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31374.1| hypothetical protein IMCC9480_13 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 100

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/99 (53%), Positives = 70/99 (70%)

Query: 68  MQANKFKTARTDVQSLLQQAQDLFAEAANATGKKADDLRASAQDLLEQALNTAQDAQAAV 127
           M  +  KT RTD+++L++ AQDLF EA +ATG KAD+LR    +LLE A   A D QAA 
Sbjct: 1   MLTSHLKTGRTDMKTLVRDAQDLFREATSATGVKADELRGRGMELLEAAATRAHDVQAAA 60

Query: 128 VETGRQIVTSTDDYVQSNPWRAIAIGTGIGLLVGLAVGR 166
           VETG++I T+ D+YV  NPWRA+A+   +GLLVGL + R
Sbjct: 61  VETGKEIATTADEYVHDNPWRAVAVSATVGLLVGLLIAR 99