BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1065.p         (451 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774617.1| hypothetical protein Hsero_1192 [Herbaspiril...   281   1e-73
emb|CAL61423.2| conserved hypothetical protein [Herminiimonas ar...   166   9e-39
ref|YP_001099550.1| hypothetical protein HEAR1248 [Herminiimonas...   165   1e-38
ref|YP_004230209.1| hypothetical protein BC1001_3737 [Burkholder...   160   6e-37
gb|AEA85140.1| NAD-dependent aldehyde dehydrogenase [Pseudomonas...   158   1e-36

>ref|YP_003774617.1| hypothetical protein Hsero_1192 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62709.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 138/145 (95%), Positives = 143/145 (98%)

Query: 1   MTNDHLISTLNDLIQISMDGEKGFRACADDAQERYIPYKDTFMARATECAQTALDLQDLV 60
           MTNDHLISTLNDLIQISMDGEKGFRACADDAQERYIPYKDTFMARATECAQT LDLQDLV
Sbjct: 1   MTNDHLISTLNDLIQISMDGEKGFRACADDAQERYIPYKDTFMARATECAQTVLDLQDLV 60

Query: 61  QRLGGEPASHSTLGGTLHRQWVNLKSAITGRDDESILDECERGEDAAVNAYRKALSEELP 120
           +RLGGEPASHSTLGG LHRQWVNLKSAITGRDDESIL+ECERGEDAAVNAYRKALSE+LP
Sbjct: 61  RRLGGEPASHSTLGGALHRQWVNLKSAITGRDDESILEECERGEDAAVNAYRKALSEDLP 120

Query: 121 TDIRLVIERQYQGVLANHDKVRSLR 145
           TDIRL+IERQYQGVLANHDKV+SLR
Sbjct: 121 TDIRLLIERQYQGVLANHDKVKSLR 145


>emb|CAL61423.2| conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 155

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 76/145 (52%), Positives = 112/145 (77%), Gaps = 3/145 (2%)

Query: 1   MTNDHLISTLNDLIQISMDGEKGFRACADDAQERYIPYKDTFMARATECAQTALDLQDLV 60
           M ND +ISTLNDLI+   DGE+GF++CA+D  +  +  K T +A A+ C+++A +L  LV
Sbjct: 6   MHND-VISTLNDLIETCKDGEEGFKSCAEDLGDSQL--KQTLLAYASNCSESARELTALV 62

Query: 61  QRLGGEPASHSTLGGTLHRQWVNLKSAITGRDDESILDECERGEDAAVNAYRKALSEELP 120
              GGEP + S+L GTLHR+W+++KSA+ G+D++++L+ECERGED A  +YR+AL ++LP
Sbjct: 63  IAHGGEPETKSSLAGTLHRRWIDIKSAVMGKDEKAVLNECERGEDVAKKSYRRALEKDLP 122

Query: 121 TDIRLVIERQYQGVLANHDKVRSLR 145
            D+++VIERQYQGVL NHD ++ LR
Sbjct: 123 LDVKVVIERQYQGVLKNHDAIKILR 147


>ref|YP_001099550.1| hypothetical protein HEAR1248 [Herminiimonas arsenicoxydans]
          Length = 150

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/145 (52%), Positives = 112/145 (77%), Gaps = 3/145 (2%)

Query: 1   MTNDHLISTLNDLIQISMDGEKGFRACADDAQERYIPYKDTFMARATECAQTALDLQDLV 60
           M ND +ISTLNDLI+   DGE+GF++CA+D  +  +  K T +A A+ C+++A +L  LV
Sbjct: 1   MHND-VISTLNDLIETCKDGEEGFKSCAEDLGDSQL--KQTLLAYASNCSESARELTALV 57

Query: 61  QRLGGEPASHSTLGGTLHRQWVNLKSAITGRDDESILDECERGEDAAVNAYRKALSEELP 120
              GGEP + S+L GTLHR+W+++KSA+ G+D++++L+ECERGED A  +YR+AL ++LP
Sbjct: 58  IAHGGEPETKSSLAGTLHRRWIDIKSAVMGKDEKAVLNECERGEDVAKKSYRRALEKDLP 117

Query: 121 TDIRLVIERQYQGVLANHDKVRSLR 145
            D+++VIERQYQGVL NHD ++ LR
Sbjct: 118 LDVKVVIERQYQGVLKNHDAIKILR 142


>ref|YP_004230209.1| hypothetical protein BC1001_3737 [Burkholderia sp. CCGE1001]
 gb|ADX57149.1| Protein of unknown function DUF2383 [Burkholderia sp. CCGE1001]
          Length = 149

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 79/145 (54%), Positives = 105/145 (72%), Gaps = 2/145 (1%)

Query: 5   HLISTLNDLIQISMDGEKGFRACADDAQERYIPYKDTFMARATECAQTALDLQDLVQRLG 64
           +++S LNDL++ S DGEKGFR  A+DA +  +  K  F+ RA +CA+ A +LQD+VQRLG
Sbjct: 4   NVVSVLNDLVETSKDGEKGFRKAAEDAHDAQL--KTLFLTRADDCARGARELQDIVQRLG 61

Query: 65  GEPASHSTLGGTLHRQWVNLKSAITGRDDESILDECERGEDAAVNAYRKALSEELPTDIR 124
           G+P S  ++ G LHR WV++KSA+T R D  IL E E+GED A   YR AL +ELP D+R
Sbjct: 62  GKPESGGSVSGALHRGWVDVKSAVTDRSDHQILVEVEKGEDVAKKNYRDALDKELPADVR 121

Query: 125 LVIERQYQGVLANHDKVRSLRILHA 149
            ++ERQYQGVL NHD+VR LR  +A
Sbjct: 122 AIVERQYQGVLQNHDRVRDLRDQYA 146


>gb|AEA85140.1| NAD-dependent aldehyde dehydrogenase [Pseudomonas stutzeri DSM
           4166]
          Length = 150

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/145 (52%), Positives = 107/145 (73%), Gaps = 2/145 (1%)

Query: 1   MTNDHLISTLNDLIQISMDGEKGFRACADDAQERYIPYKDTFMARATECAQTALDLQDLV 60
           M     IS LNDLI+   DGEKGF  CA+D ++    +K T   R+ +CA  A +LQ LV
Sbjct: 1   MDTKETISVLNDLIETCKDGEKGFLECAEDLRDP--QFKSTMNQRSRDCATAAAELQQLV 58

Query: 61  QRLGGEPASHSTLGGTLHRQWVNLKSAITGRDDESILDECERGEDAAVNAYRKALSEELP 120
           + +GG+P + ++L   +HR+WV+LK+ ITG+DDE+IL+ECERGED AV +YRKAL ++LP
Sbjct: 59  RSMGGDPETSTSLSADMHRRWVDLKAMITGKDDEAILNECERGEDVAVKSYRKALEKDLP 118

Query: 121 TDIRLVIERQYQGVLANHDKVRSLR 145
            ++R+V+ERQYQGV  NHD+V++LR
Sbjct: 119 AEVRIVVERQYQGVQRNHDQVKALR 143