BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1064.p (263 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_551302.1| sigma-54 dependent trancsriptional regulator [P... 175 5e-42 emb|CBA27972.1| hypothetical protein Csp_A04950 [Curvibacter put... 116 3e-24 ref|ZP_07046590.1| helix-turn-helix, Fis-type [Comamonas testost... 112 8e-23 ref|ZP_03541870.1| transcriptional regulator, Fis family [Comamo... 111 1e-22 ref|YP_003279558.1| Fis-type helix-turn-helix protein [Comamonas... 110 2e-22 >ref|YP_551302.1| sigma-54 dependent trancsriptional regulator [Polaromonas sp. JS666] gb|ABE46404.1| sigma54 specific transcriptional regulator with GAF sensor, Fis family [Polaromonas sp. JS666] Length = 633 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 105/243 (43%), Positives = 144/243 (59%), Gaps = 10/243 (4%) Query: 12 LAESERIRTARRLFFEEGTLPSGLVPDAVLR------GVGYRTGEAVSFDPVQPSVVSSL 65 L ERI ARR FF++G+ P+GL+ D VLR G G E V FDPV ++ L Sbjct: 11 LYAPERIWQARRAFFDDGSAPAGLIDDPVLRSWQRCRGQGRGASEQVEFDPVDRLALARL 70 Query: 66 CERSHDLIEAARPEFERLARVLGEGAYGLLLTDADGHAVAVHGPLQHCGELIRRALRPGV 125 E L+EAARPE + LAR + + Y +LLTD G A+AV G E +R+A RPGV Sbjct: 71 LEAQRTLLEAARPELDALARAVSDAGYAVLLTDVQGRALAVEGCTDRRSEPLRQAFRPGV 130 Query: 126 NLAEARIGTSAMSTAMAEGQAIGVFGQEHFFAQHGSFQCAAAPIYGVQGELRGTIDVTRD 185 +L+EA IGT+AMS+AM E + + V G EHFFA + F C AAP++ QG + G +D++RD Sbjct: 131 DLSEAVIGTNAMSSAMTEQRVVRVLGPEHFFADNQIFHCCAAPVFDPQGRVVGAVDISRD 190 Query: 186 TPLPQFGVLSLMQDSASVIEATLLRAVPARLRVRMCWYHGALGGLGNAMMAFGADGEVVA 245 P G ++L Q A IE L A+PA +R+R+ + A +AF DG ++A Sbjct: 191 MPGLAAGAVALTQRCARRIERKLFEALPAFVRLRLETQDAS----DEAWLAFNRDGGLLA 246 Query: 246 ANV 248 AN+ Sbjct: 247 ANI 249 >emb|CBA27972.1| hypothetical protein Csp_A04950 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 373 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 123/237 (51%), Gaps = 7/237 (2%) Query: 18 IRTARRLFFEEG-TLPSGLVPDAVLRGV------GYRTGEAVSFDPVQPSVVSSLCERSH 70 I TAR+ EG LP+ L + R G R E +SFD V + + + E + Sbjct: 16 ISTARQAMLLEGRALPAPLSSPWIERSWRRCLDDGLRPQERLSFDMVPRAALQRIEEANQ 75 Query: 71 DLIEAARPEFERLARVLGEGAYGLLLTDADGHAVAVHGPLQHCGELIRRALRPGVNLAEA 130 L+ AARP RL + + + Y +LT+ADG V V G + R GV+L+E Sbjct: 76 SLLSAARPLLGRLGQAIADTRYFAILTNADGVVVDVSGNIDRSDRRADVIARVGVDLSER 135 Query: 131 RIGTSAMSTAMAEGQAIGVFGQEHFFAQHGSFQCAAAPIYGVQGELRGTIDVTRDTPLPQ 190 R+GT+A+ A++E + + + EHFF + ++ CA AP++G G G +D+T + + Sbjct: 136 RVGTTAIGAALSEMRPVWLHRGEHFFDDNAAYSCAGAPLFGPDGACIGMLDLTGIDAIER 195 Query: 191 FGVLSLMQDSASVIEATLLRAVPARLRVRMCWYHGALGGLGNAMMAFGADGEVVAAN 247 + L+ +AS IE L+ A P L +R+ W +LGG G+ M+ DG V AAN Sbjct: 196 PELRHLVARTASKIENALVLAKPHCLLLRLNWPGNSLGGDGDGMLCLDGDGWVTAAN 252 >ref|ZP_07046590.1| helix-turn-helix, Fis-type [Comamonas testosteroni S44] gb|EFI59709.1| helix-turn-helix, Fis-type [Comamonas testosteroni S44] Length = 358 Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 114/221 (51%), Gaps = 5/221 (2%) Query: 32 PSGLVP---DAVLRGV--GYRTGEAVSFDPVQPSVVSSLCERSHDLIEAARPEFERLARV 86 PSGL P + R V G + V F+ V P + ++ L++AARP +L Sbjct: 9 PSGLAPWLWRSWQRCVAQGRHPAQKVEFEAVGPHALRHAQDKHQLLLQAARPVMTQLVAA 68 Query: 87 LGEGAYGLLLTDADGHAVAVHGPLQHCGELIRRALRPGVNLAEARIGTSAMSTAMAEGQA 146 +G Y LLTDA G A+ V GP+ H R GV+L+E +GTSA+ +AE Sbjct: 69 VGAMRYFCLLTDAQGLALEVQGPVDHSDLRALAVGRVGVDLSERGVGTSAIGATLAELSP 128 Query: 147 IGVFGQEHFFAQHGSFQCAAAPIYGVQGELRGTIDVTRDTPLPQFGVLSLMQDSASVIEA 206 + + QEHFF + CA AP++G QGE G +D+T + +L L A IE Sbjct: 129 VWLHRQEHFFDDLRDYSCAGAPVFGPQGECLGMLDITGIDVPERPELLLLALRCARAIED 188 Query: 207 TLLRAVPARLRVRMCWYHGALGGLGNAMMAFGADGEVVAAN 247 LLRA+P L +R+ W G LG G +M F A+G ++ +N Sbjct: 189 RLLRALPHTLLLRVNWPGGPLGQEGEGLMVFDAEGRLLGSN 229 >ref|ZP_03541870.1| transcriptional regulator, Fis family [Comamonas testosteroni KF-1] gb|EED66156.1| transcriptional regulator, Fis family [Comamonas testosteroni KF-1] Length = 390 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 115/222 (51%), Gaps = 5/222 (2%) Query: 31 LPSGLVP---DAVLRGV--GYRTGEAVSFDPVQPSVVSSLCERSHDLIEAARPEFERLAR 85 +PSGL P + R V G + V F+ V P + ++ L++AARP +L Sbjct: 40 VPSGLAPWLWRSWQRCVAQGRHPAQTVEFEAVGPHALRHAQDKHQLLLQAARPVMTQLVA 99 Query: 86 VLGEGAYGLLLTDADGHAVAVHGPLQHCGELIRRALRPGVNLAEARIGTSAMSTAMAEGQ 145 +G Y LLTDA G A+ V GP+ H R GV+L+E +GTSA+ +AE Sbjct: 100 AVGAMRYFCLLTDAQGLALEVQGPVDHSDLRALAVGRVGVDLSERGVGTSAIGATLAELS 159 Query: 146 AIGVFGQEHFFAQHGSFQCAAAPIYGVQGELRGTIDVTRDTPLPQFGVLSLMQDSASVIE 205 + + QEHFF + CA AP++G QGE G +D+T + +L L A IE Sbjct: 160 PVWLHRQEHFFDDLRDYSCAGAPVFGPQGECLGMLDITGIDVPERPELLLLALRCARAIE 219 Query: 206 ATLLRAVPARLRVRMCWYHGALGGLGNAMMAFGADGEVVAAN 247 LLRA+P L +R+ W G LG G +M F A+G ++ +N Sbjct: 220 DRLLRALPHTLLLRVNWPGGPLGQEGEGLMVFDAEGRLLGSN 261 >ref|YP_003279558.1| Fis-type helix-turn-helix protein [Comamonas testosteroni CNB-2] gb|ACY34262.1| helix-turn-helix, Fis-type [Comamonas testosteroni CNB-2] Length = 390 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 114/221 (51%), Gaps = 5/221 (2%) Query: 32 PSGLVP---DAVLRGV--GYRTGEAVSFDPVQPSVVSSLCERSHDLIEAARPEFERLARV 86 PSGL P + R V G + V F+ V P + ++ L++AARP +L Sbjct: 41 PSGLAPWLWRSWQRCVAQGRHPAQKVEFEAVGPHALRHAQDKHQLLLQAARPVMTQLVAA 100 Query: 87 LGEGAYGLLLTDADGHAVAVHGPLQHCGELIRRALRPGVNLAEARIGTSAMSTAMAEGQA 146 +G Y LLTDA G A+ V GP+ H R GV+L+E +GTSA+ +AE Sbjct: 101 VGAMRYFCLLTDAQGLALEVQGPVDHSDLRALAVGRVGVDLSERGVGTSAIGATLAELSP 160 Query: 147 IGVFGQEHFFAQHGSFQCAAAPIYGVQGELRGTIDVTRDTPLPQFGVLSLMQDSASVIEA 206 + + QEHFF + CA AP++G QGE G +D+T + +L L A IE Sbjct: 161 VWLHRQEHFFDDLRDYSCAGAPVFGPQGECLGMLDITGIDVPERPELLLLALRCARAIED 220 Query: 207 TLLRAVPARLRVRMCWYHGALGGLGNAMMAFGADGEVVAAN 247 LLRA+P L +R+ W G LG G +M F A+G ++ +N Sbjct: 221 RLLRALPHTLLLRVNWPGGPLGQEGEGLMVFDAEGRLLGSN 261