BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1062.p (517 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774740.1| hypothetical protein Hsero_1316 [Herbaspiril... 613 e-173 ref|YP_001629988.1| hypothetical protein Bpet1383 [Bordetella pe... 445 e-122 ref|YP_004127262.1| gtp-binding protein hsr1-related protein [Al... 398 e-108 ref|ZP_03265962.1| conserved hypothetical protein [Burkholderia ... 397 e-108 ref|YP_003605880.1| hypothetical protein BC1002_2311 [Burkholder... 389 e-106 >ref|YP_003774740.1| hypothetical protein Hsero_1316 [Herbaspirillum seropedicae SmR1] gb|ADJ62832.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 512 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 382/508 (75%), Positives = 431/508 (84%), Gaps = 1/508 (0%) Query: 1 MSREEQRFIDSIGRTGQGEADLQPVLSALRDWLAALAQAFEAAPLPASGLQSASPMARRM 60 M+R+EQ+FID+IGRTGQGEADLQPVL+ALR WL+AL QA + + A GLQ S +ARR+ Sbjct: 1 MNRQEQQFIDAIGRTGQGEADLQPVLAALRGWLSALDQALQDGRIDAVGLQPGSALARRI 60 Query: 61 AALHEERIHQARCREEQWIALAPARALAQRFEGKLMLLVFGKFNAGKSSLCNFLAQRFRE 120 A LH++ QA+ R++QW+ALAPARALAQRFEGKLMLLVFGKFNAGKSSLCNFLAQRFR+ Sbjct: 61 AGLHDDLARQAQRRQQQWMALAPARALAQRFEGKLMLLVFGKFNAGKSSLCNFLAQRFRQ 120 Query: 121 RQQAVQYFHLQDGALVESEDPFHEGATETTARLQGVCLGDGLVLLDTPGLHSATGENAAL 180 R QAVQYFHLQDG L+ES FHEGATETTARLQGVCLGDGLVLLDTPGLHSAT +NAAL Sbjct: 121 RGQAVQYFHLQDGQLIESASAFHEGATETTARLQGVCLGDGLVLLDTPGLHSATDDNAAL 180 Query: 181 TQRFLDSADAVLWLTSSTSPGQVQELDELARELRRGKPLLPVLTRSDVIDEDEVDGRIVK 240 TQRFLDSADAVLWLTSSTSPGQVQELDELARELRRGKPLLPVLTRSDVIDEDE+DG+IVK Sbjct: 181 TQRFLDSADAVLWLTSSTSPGQVQELDELARELRRGKPLLPVLTRSDVIDEDELDGQIVK 240 Query: 241 CLRNKSDANRADQEADVRARAADKLQSLGVALHQLKAPVSVSAYVARTAGADAEAMRGAG 300 LRNKS ANRADQEADV ARA DKLQ+LGVAL QLK PVS+SA+VART GADA AM GAG Sbjct: 241 RLRNKSPANRADQEADVHARARDKLQALGVALSQLKPPVSLSAHVARTEGADAAAMEGAG 300 Query: 301 FERLYAALSDLLAPALAYRDRKPAEVLLHHLQEAVLAPLQGQTLPALRGLQQLVQSELQA 360 F+R YAALS LLAPALAYRDRKPAEVLLHHLQE VLAPL GQTLPAL+ LQQL++ E Sbjct: 301 FDRFYAALSALLAPALAYRDRKPAEVLLHHLQEDVLAPLLGQTLPALQALQQLLEQEQAT 360 Query: 361 LPASRARIVQLAWREVMPGLPALLEQHAGTGDVDTVLASLQASLMHAFERHARAVLDSHV 420 LPA ARIVQLAWRE+MPGLPALLEQHA D+ VL ++Q +MHAFERHARAVLDSHV Sbjct: 361 LPAQCARIVQLAWREIMPGLPALLEQHAAADDLAAVLDTVQPLMMHAFERHARAVLDSHV 420 Query: 421 LSAPAPVALVLPAGSGYER-IADDLPPSYEKLYEALSQSVLAALEQLADEVAGHCTARLA 479 L+APA +VLPA +GYER ADDLPPSYEKLY+AL Q++ +LE LA+ C ARL Sbjct: 421 LAAPAAQGIVLPADAGYERAFADDLPPSYEKLYDALGQAIQLSLEALAETTGQVCAARLE 480 Query: 480 ALSDAVSVQRALVDEHARRLQQLESGLR 507 ALS AV ++ ++ + +L ++E GLR Sbjct: 481 ALSAAVHRKQQIIHRYTGQLGEIEQGLR 508 >ref|YP_001629988.1| hypothetical protein Bpet1383 [Bordetella petrii DSM 12804] emb|CAP41718.1| conserved hypothetical protein [Bordetella petrii] Length = 527 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 279/527 (52%), Positives = 342/527 (64%), Gaps = 19/527 (3%) Query: 1 MSREEQRFIDSIGRTGQGEADLQPVLSALRDWLAALAQAFEAAPLPASGLQSASPMARRM 60 MS EQ+F+D+ G GE +L+PVL ++DWL+ L QA L GLQ AS +AR++ Sbjct: 1 MSTVEQQFMDAADAFGIGERNLRPVLQQMQDWLSGLVQALHDRSLKQDGLQPASALARQV 60 Query: 61 AALHEERIHQARCREEQWIALAPARALAQRFEGKLMLLVFGKFNAGKSSLCNFLAQRFRE 120 A++ R +QW L PA+ALAQ F+ K MLLVFGKFNAGKSSLCNFLA RF+ Sbjct: 61 QAINANVKADERRWADQWERLRPAQALAQTFDDKAMLLVFGKFNAGKSSLCNFLAGRFQR 120 Query: 121 RQQAVQYFHLQDGALVESEDPFHEGATETTARLQGVCLGDGLVLLDTPGLHSATGENAAL 180 R ++V+YFHL+ G +VE+ F EGA ETTARLQGVCLG LVLLDTPGLHS T +NAAL Sbjct: 121 RGRSVRYFHLEAGQIVETGQRFREGAVETTARLQGVCLGAKLVLLDTPGLHSGTDKNAAL 180 Query: 181 TQRFLDSADAVLWLTSSTSPGQVQELDELARELRRGKPLLPVLTRSDVIDEDEVDGRIVK 240 TQRFLDSAD VLWL+SSTSPGQVQELDELARELRR KPLLPV+TRSD I+EDEVDG IVK Sbjct: 181 TQRFLDSADGVLWLSSSTSPGQVQELDELARELRRSKPLLPVVTRSDFIEEDEVDGAIVK 240 Query: 241 CLRNKSDANRADQEADVRARAADKLQSLGVALHQLKAPVSVSAYVARTAGADAEAMRGAG 300 LRNK+ NRA QEADV RA +KL +L V L+APVSVS +VAR AM AG Sbjct: 241 RLRNKTGPNRALQEADVHERAKEKLLALQVPPQLLRAPVSVSVHVAREQEETDAAMADAG 300 Query: 301 FERLYAALSDLLAPALAYRDRKPAEVLLHHLQEAVLAPLQGQTLPALRGLQQLVQSELQA 360 F RLY AL D+ PALAY+ RKPAEVLLHHLQE VL L +T+PAL L+Q V+ E Sbjct: 301 FGRLYGALLDITEPALAYKQRKPAEVLLHHLQEHVLGGLNAETVPALEDLRQAVKVEDAE 360 Query: 361 LPASRARIVQLAWREVMPGLPALLEQHAGTGDVDTVLASLQASLMHAFERHARAVLDSHV 420 L +ARIVQ AWREV+P LPALLE+HA TG++ + A L AF R L +V Sbjct: 361 LARRQARIVQSAWREVIPKLPALLERHANTGEIQKACDEVTAWLEAAFLRQVNEQLADYV 420 Query: 421 LSAPAPVALVLPAGSGYERIADDLPPSY-------------------EKLYEALSQSVLA 461 LS P P ++ L G ER++ S+ E++Y AL ++V Sbjct: 421 LSLPTPASITLAECIGRERLSVAGQTSFVSKTDEATQQVLAMEALDHERMYNALERAVRT 480 Query: 462 ALEQLADEVAGHCTARLAALSDAVSVQRALVDEHARRLQQLESGLRA 508 L +A C+A L++L + L+ +L+ +E LRA Sbjct: 481 RLMDMAAGAVQACSATLSSLDENARRMEELLVSRGEQLRFIEQALRA 527 >ref|YP_004127262.1| gtp-binding protein hsr1-related protein [Alicycliphilus denitrificans BC] gb|ADV00375.1| GTP-binding protein HSR1-related protein [Alicycliphilus denitrificans BC] Length = 507 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 256/490 (52%), Positives = 316/490 (64%), Gaps = 14/490 (2%) Query: 18 GEADLQPVLSALRDWLAALAQAFEAA-PLPASGLQSASPMARRMAALHEERIHQARCREE 76 G ADL VL L WL L + A PLP GL +A +AR+ A++ C Sbjct: 26 GVADLSDVLLQLDGWLVRLDRDMAAGLPLP-QGLHAAGALARQADAINRLLQDCRACWAR 84 Query: 77 QWIALAPARALAQRFEGKLMLLVFGKFNAGKSSLCNFLAQRFRERQQAVQYFHLQDGALV 136 Q L PA+ALA+ F+ +LMLLVFGKFNAGKSSLCNFLA RF V+YFHL+ G +V Sbjct: 85 QRAGLQPAQALAEGFDDRLMLLVFGKFNAGKSSLCNFLADRFAAHGWPVRYFHLEAGRIV 144 Query: 137 ESEDPFHEGATETTARLQGVCLGDGLVLLDTPGLHSATGENAALTQRFLDSADAVLWLTS 196 ES D EGATETTARLQGVCLG+ LVLLDTPGLHS T ENAALTQRF DSAD VLWLTS Sbjct: 145 ESGDRLREGATETTARLQGVCLGERLVLLDTPGLHSVTPENAALTQRFTDSADGVLWLTS 204 Query: 197 STSPGQVQELDELARELRRGKPLLPVLTRSDVIDEDEVDGRIVKCLRNKSDANRADQEAD 256 S+SPGQVQEL +LAREL R KPLLPV+TRSDVI+EDE+DG I KCLRNK+ ANRA QEAD Sbjct: 205 SSSPGQVQELHDLARELHRSKPLLPVITRSDVIEEDEIDGEIRKCLRNKTPANRALQEAD 264 Query: 257 VRARAADKLQSLGVALHQLKAPVSVSAYVARTAGADAEAMRGAGFERLYAALSDLLAPAL 316 VR RA DKL+ +GV LKAPVSVSA+ AR G A A+ AGF RLYAAL D+L PAL Sbjct: 265 VRQRALDKLRHMGVDPRLLKAPVSVSAHAAREQGQTAAALEAAGFPRLYAALLDMLTPAL 324 Query: 317 AYRDRKPAEVLLHHLQEAVLAPLQGQTLPALRGLQQLVQSELQALPASRARIVQLAWREV 376 AY+ RKPAEVLLHH QE VL + + LPA+ GLQ + E + L + +++ AWR+V Sbjct: 325 AYKRRKPAEVLLHHAQENVLGAIGAEILPAIAGLQAALAQERERLRQYKTDMLRAAWRQV 384 Query: 377 MPGLPALLEQHAGTGDVDTVLASLQASLMHAFERHARAVLDSHVLSAPAPVALVLPAGSG 436 +P LPALLEQH + + A++ + A + AR L + + + VA+ LP Sbjct: 385 IPELPALLEQH--DTPLPMLCAAVSRLMQQAIDELARTTLADYAVPGGSAVAISLPP--- 439 Query: 437 YERIADDLPPSYEKLYEALSQSVLAALEQLADEVAGHCTARLAALSDAVSVQRALVDEHA 496 L P++E+L+ AL ++ L+ E HC A L+ L+D + + + Sbjct: 440 -------LAPNHERLHAALQDAIRQQLDSAFGERLEHCGAALSQLADGAERLQGRLQQCG 492 Query: 497 RRLQQLESGL 506 LQ + L Sbjct: 493 HPLQDIAREL 502 >ref|ZP_03265962.1| conserved hypothetical protein [Burkholderia sp. H160] gb|EEA02517.1| conserved hypothetical protein [Burkholderia sp. H160] Length = 526 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 248/519 (47%), Positives = 314/519 (60%), Gaps = 12/519 (2%) Query: 2 SREEQRFIDSIGRTGQGEADLQPVLSALRDWLAALAQAFEAAPLPASGLQSASPMARRMA 61 + EQRF+ D+ +L AL DWLA L L GL+ S +A Sbjct: 5 ASHEQRFLAEADAFDFTAEDIDALLHALNDWLAKLNAELRTDGLTWDGLREMSALAIEAD 64 Query: 62 ALHEERIHQARCREEQWIALAPARALAQRFEGKLMLLVFGKFNAGKSSLCNFLAQRFRER 121 ++ +QW L A+ LA F+ + +LLVFGKFNAGKSS CNFLA+RF Sbjct: 65 TINTRLRDSTHAWMQQWSNLEAAQHLADYFDDQALLLVFGKFNAGKSSFCNFLAERFAAH 124 Query: 122 QQAVQYFHLQDGALVESEDPFHEGATETTARLQGVCLGDGLVLLDTPGLHSATGENAALT 181 ++VQYFH+ G +VE+ +PF EGATETT+RLQGV G LVLLDTPGLHS T ENAALT Sbjct: 125 NRSVQYFHVDAGRVVETSEPFTEGATETTSRLQGVRFGAKLVLLDTPGLHSVTPENAALT 184 Query: 182 QRFLDSADAVLWLTSSTSPGQVQELDELARELRRGKPLLPVLTRSDVIDEDEVDGRIVKC 241 QRF DSAD VLWLTSSTSPGQVQELDEL REL R KPLLPV+TRSD +EDEVDG +VKC Sbjct: 185 QRFTDSADGVLWLTSSTSPGQVQELDELGRELHRNKPLLPVVTRSDEYEEDEVDGELVKC 244 Query: 242 LRNKSDANRADQEADVRARAADKLQSLGVALHQLKAPVSVSAYVARTAGADAEAMRGAGF 301 LRNKS RA QE D++ RA DKL ++GV LK PVS+SAYVAR AG A AM AGF Sbjct: 245 LRNKSAPRRALQEHDIKVRAEDKLVAMGVDKALLKPPVSISAYVAREAGQTAAAMSDAGF 304 Query: 302 ERLYAALSDLLAPALAYRDRKPAEVLLHHLQEAVLAPLQGQTLPALRGLQQLVQSELQAL 361 ERLYAAL D+ PALAY+ RK AEVLLHHL+E VL LQ LP L GL + ++EL L Sbjct: 305 ERLYAALLDITGPALAYKRRKRAEVLLHHLEENVLGSLQSDVLPLLAGLGESSRAELAKL 364 Query: 362 PASRARIVQLAWREVMPGLPALLEQHAGTGDVDTVLASLQASLMHAFERHARAVLDSHVL 421 + ++ WR ++P LPALL+ HA DV + +L S+ F R A +L +++ Sbjct: 365 EQQQEQLANAVWRGIVPTLPALLDTHAAKHDVVGLCNALSQSIFELFGREADRLLGDYLI 424 Query: 422 SAPAPVALV-LPAGSGYERI----ADDLPPSYE-------KLYEALSQSVLAALEQLADE 469 A +A + L +G++ + AD P E +L+ ALS ++ + L+ Sbjct: 425 EPDASLAQIRLDDDAGFDDVVIERADANGPVSEVAGVDFGRLHTALSHAIRECVLSLSVH 484 Query: 470 VAGHCTARLAALSDAVSVQRALVDEHARRLQQLESGLRA 508 A C +A L+ + H RL L+S +R+ Sbjct: 485 AAQRCRGSIAHLTKLARRLEESLATHEERLLDLKSQVRS 523 >ref|YP_003605880.1| hypothetical protein BC1002_2311 [Burkholderia sp. CCGE1002] gb|ADG16369.1| conserved hypothetical protein [Burkholderia sp. CCGE1002] Length = 526 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 250/519 (48%), Positives = 316/519 (60%), Gaps = 12/519 (2%) Query: 2 SREEQRFIDSIGRTGQGEADLQPVLSALRDWLAALAQAFEAAPLPASGLQSASPMARRMA 61 + EQ FI + D+ +L AL DWLA L+ L GL + S +A R Sbjct: 5 ASHEQCFIAEVDAFDFIAEDIDALLYALNDWLAKLSADLHNGCLTCDGLHANSALAIRAD 64 Query: 62 ALHEERIHQARCREEQWIALAPARALAQRFEGKLMLLVFGKFNAGKSSLCNFLAQRFRER 121 A++ + +QW +L AR LA F + +LLVFGKFNAGKSS CNFLA+RF Sbjct: 65 AINALLRDSVQASRQQWSSLEAARQLADHFYDQALLLVFGKFNAGKSSFCNFLAERFAAH 124 Query: 122 QQAVQYFHLQDGALVESEDPFHEGATETTARLQGVCLGDGLVLLDTPGLHSATGENAALT 181 +++VQYFH+ G +VE+ +PF EGATETT+RLQGV LG LVLLDTPGLHS T ENAALT Sbjct: 125 ERSVQYFHVDAGRVVETSEPFTEGATETTSRLQGVRLGAKLVLLDTPGLHSVTPENAALT 184 Query: 182 QRFLDSADAVLWLTSSTSPGQVQELDELARELRRGKPLLPVLTRSDVIDEDEVDGRIVKC 241 QRF DSAD VLWL+ STSPGQVQELDEL REL R KPLLPV+TRSD +EDEVDG +VK Sbjct: 185 QRFTDSADGVLWLSGSTSPGQVQELDELGRELHRNKPLLPVVTRSDEYEEDEVDGELVKY 244 Query: 242 LRNKSDANRADQEADVRARAADKLQSLGVALHQLKAPVSVSAYVARTAGADAEAMRGAGF 301 L NKS RA QE DV+ RA KL ++GV LK PVS+SAYVAR AG AEAM AGF Sbjct: 245 LCNKSAPRRALQEHDVKVRAEHKLVAMGVDKTLLKPPVSISAYVAREAGQTAEAMSEAGF 304 Query: 302 ERLYAALSDLLAPALAYRDRKPAEVLLHHLQEAVLAPLQGQTLPALRGLQQLVQSELQAL 361 ERLYAAL D+ PALAY+ RK AEVLLHHL+E VL LQ LP L GL + Q+ L+ L Sbjct: 305 ERLYAALLDITGPALAYKRRKRAEVLLHHLEENVLGNLQSDVLPLLAGLGESSQAALEQL 364 Query: 362 PASRARIVQLAWREVMPGLPALLEQHAGTGDVDTVLASLQASLMHAFERHARAVLDSHVL 421 + ++ WR ++P LPALL+ HA T DV + +L S+ + R A +L +++ Sbjct: 365 EQQQEQLANSVWRGIVPTLPALLDAHAATHDVIGLCNALSQSIFELYRREADRLLGDYLI 424 Query: 422 SAPAPVALVLPAGS------GYERIADDLPPS------YEKLYEALSQSVLAALEQLADE 469 A +A + A ER + P S Y +L+ ALS ++ + L+ Sbjct: 425 EPDASLARIELADDVGFDDIAVERAGANGPVSEVAGVDYGRLHAALSGAIRECVLSLSGH 484 Query: 470 VAGHCTARLAALSDAVSVQRALVDEHARRLQQLESGLRA 508 A C A +A L+ A + H L L+S +R+ Sbjct: 485 AAQRCRASIARLTKLARRLEASLATHEEGLLDLKSQVRS 523