BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1061.p (423 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774739.1| hypothetical protein Hsero_1315 [Herbaspiril... 549 e-154 ref|YP_001629989.1| hypothetical protein Bpet1384 [Bordetella pe... 454 e-125 ref|ZP_03265961.1| GTP-binding protein HSR1-related [Burkholderi... 388 e-105 ref|YP_003605881.1| hypothetical protein BC1002_2312 [Burkholder... 387 e-105 gb|AAL02148.1| unknown [Acinetobacter lwoffii K24] 382 e-104 >ref|YP_003774739.1| hypothetical protein Hsero_1315 [Herbaspirillum seropedicae SmR1] gb|ADJ62831.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 422 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 344/423 (81%), Positives = 381/423 (90%), Gaps = 1/423 (0%) Query: 1 MTPQHHSFDPLASEILAVVPGRAHDLARLRVLAQVHAAPTVTVVGKYNHGKSRLLNELMG 60 M PQ FDPLASE+LAV P RAHDLARLRVLAQ HAAPTVTVVGKYNHGKSRLLNEL+G Sbjct: 1 MNPQDF-FDPLASEVLAVAPTRAHDLARLRVLAQRHAAPTVTVVGKYNHGKSRLLNELVG 59 Query: 61 RDVFAVADRRETVTLSEHHHAELRWLDAPGLDADVALQDDSHAQEATWLQADVRLFVHAA 120 RDVFAVADRR+TVTLSEHHHAELRWLDAPGLDADVA QDD HAQ+A WL AD+RLFVHAA Sbjct: 60 RDVFAVADRRQTVTLSEHHHAELRWLDAPGLDADVAEQDDGHAQQAIWLHADIRLFVHAA 119 Query: 121 KEGELDAAERHLLQALREDQQRTRRQTLFVLTQVDQMSDDEQLAKVSAAIVAQAPGLTLH 180 KEGELDAAER LLQ LREDQ RTRRQTLFVLTQVDQMSD+EQLAKVSAAI AQA GL LH Sbjct: 120 KEGELDAAERKLLQTLREDQLRTRRQTLFVLTQVDQMSDEEQLAKVSAAIEAQAHGLALH 179 Query: 181 PVSSTRHRSGVEGGKSLLLQRSGIPALQALLREVVEQVPGARRHERNLLFTEIGQQVRQQ 240 PVS+TRHR+GVEGGK LLL +SGIPALQALLREVV+QVP AR+HE+ +LF +IG+Q++QQ Sbjct: 180 PVSATRHRNGVEGGKQLLLNKSGIPALQALLREVVQQVPAARQHEQAVLFADIGEQLQQQ 239 Query: 241 QAALESGLKTLRQRQQQQRQDFEQGLQAVLEKVHQDLLPIVEFQGDDPALVPDTAADEFK 300 QAA ++ + L+QRQQQQRQ FEQGLQ+VLE +HQDLLPIVE QG+DPAL PDTAADEF+ Sbjct: 240 QAAAQAQWQALQQRQQQQRQQFEQGLQSVLESIHQDLLPIVELQGEDPALTPDTAADEFR 299 Query: 301 LTAGKRERARIHVAYSRACIAIRAHLIQHGVEGLPASQQTSVASLDTVMVAVLGISIKYR 360 LTAGKRERARIHVAYSRACIAIRAHLIQHGVEGLPA Q+TSVASLDTVMVAV+GIS+KYR Sbjct: 300 LTAGKRERARIHVAYSRACIAIRAHLIQHGVEGLPADQRTSVASLDTVMVAVMGISVKYR 359 Query: 361 ADLRRRFCEPAGQAHLKEAFLHYYELSEDRQALQQQIAIGEAELHAHQRAQQALARLREG 420 ADLRRRFCEPAGQA L ++FLHYYELSED+QALQQ +A ++E A+ RA +AL RLR+G Sbjct: 360 ADLRRRFCEPAGQAQLMQSFLHYYELSEDQQALQQALAQAQSEQQANTRALEALQRLRQG 419 Query: 421 AGA 423 A A Sbjct: 420 ASA 422 >ref|YP_001629989.1| hypothetical protein Bpet1384 [Bordetella petrii DSM 12804] emb|CAP41719.1| conserved hypothetical protein [Bordetella petrii] Length = 424 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 268/411 (65%), Positives = 314/411 (76%) Query: 7 SFDPLASEILAVVPGRAHDLARLRVLAQVHAAPTVTVVGKYNHGKSRLLNELMGRDVFAV 66 +FD ++LAV+P R+ DLARLRVL Q PTVTV+GKYNHGKSRLLNEL+G D FAV Sbjct: 11 TFDLAERDVLAVLPARSQDLARLRVLVQQQPQPTVTVMGKYNHGKSRLLNELVGSDTFAV 70 Query: 67 ADRRETVTLSEHHHAELRWLDAPGLDADVALQDDSHAQEATWLQADVRLFVHAAKEGELD 126 AD+RETV L+EH + +RWLDAPGLDADV L DD HA A WLQAD+RLFVHAAKEGELD Sbjct: 71 ADKRETVALAEHVQSAVRWLDAPGLDADVGLADDGHAYHAAWLQADIRLFVHAAKEGELD 130 Query: 127 AAERHLLQALREDQQRTRRQTLFVLTQVDQMSDDEQLAKVSAAIVAQAPGLTLHPVSSTR 186 AAER LL L DQQRTRR+TLFVLTQVDQM+DD L KV AI AQAP LTLH VSSTR Sbjct: 131 AAERTLLHTLDADQQRTRRRTLFVLTQVDQMADDAHLDKVVTAIHAQAPELTLHQVSSTR 190 Query: 187 HRSGVEGGKSLLLQRSGIPALQALLREVVEQVPGARRHERNLLFTEIGQQVRQQQAALES 246 HR GVEGGK LL+++SGIPAL A+LRE + +VP AR HE LL EI ++++ ++ Sbjct: 191 HRQGVEGGKKLLIEKSGIPALHAVLREAIAEVPAARVHETALLLGEIRRELQSAKSDAWL 250 Query: 247 GLKTLRQRQQQQRQDFEQGLQAVLEKVHQDLLPIVEFQGDDPALVPDTAADEFKLTAGKR 306 L++L+ Q QQRQ FEQGL VL+KV DL P++E G D ALVPD+ + FKLTAGK+ Sbjct: 251 RLQSLQGTQHQQRQAFEQGLIEVLDKVQIDLQPVLEVSGPDQALVPDSFENAFKLTAGKQ 310 Query: 307 ERARIHVAYSRACIAIRAHLIQHGVEGLPASQQTSVASLDTVMVAVLGISIKYRADLRRR 366 ERARI VAYSRACIAI AHL++H V GLP +QQTSV SLDTVMVAV+G+S+KYR DLRR Sbjct: 311 ERARIQVAYSRACIAINAHLVKHAVVGLPQAQQTSVTSLDTVMVAVMGVSVKYREDLRRI 370 Query: 367 FCEPAGQAHLKEAFLHYYELSEDRQALQQQIAIGEAELHAHQRAQQALARL 417 FCEP G+ L F Y+ELS+DRQAL +IA EAE A +A QALA L Sbjct: 371 FCEPEGRDRLGRDFARYFELSDDRQALASRIAQCEAERVAADKALQALATL 421 >ref|ZP_03265961.1| GTP-binding protein HSR1-related [Burkholderia sp. H160] gb|EEA02516.1| GTP-binding protein HSR1-related [Burkholderia sp. H160] Length = 418 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 226/387 (58%), Positives = 283/387 (73%), Gaps = 1/387 (0%) Query: 12 ASEILAVVPGRAHDLARLRVLAQVHAAPTVTVVGKYNHGKSRLLNELMGRDVFAVADRRE 71 A ++ +V+P RAHDLARL +L + P VTV+GKYNHGKS LLNEL+GRD FAV+DRRE Sbjct: 10 AHDVASVLPDRAHDLARLLILID-DSEPVVTVIGKYNHGKSSLLNELLGRDAFAVSDRRE 68 Query: 72 TVTLSEHHHAELRWLDAPGLDADVALQDDSHAQEATWLQADVRLFVHAAKEGELDAAERH 131 TV LS+ H +RWLDAPGLDADV DD A A WL++D+RLFVHAAKEGELDA E Sbjct: 69 TVCLSDSVHQGVRWLDAPGLDADVGSGDDREALRAAWLKSDIRLFVHAAKEGELDAKELT 128 Query: 132 LLQALREDQQRTRRQTLFVLTQVDQMSDDEQLAKVSAAIVAQAPGLTLHPVSSTRHRSGV 191 LL L D+ RT RQTLFVL+QVDQ++DD L K+ AI Q PG+ L+ VSS RHR G+ Sbjct: 129 LLTELDADRIRTGRQTLFVLSQVDQLADDAALRKIGDAIDRQMPGIALNAVSSMRHRKGL 188 Query: 192 EGGKSLLLQRSGIPALQALLREVVEQVPGARRHERNLLFTEIGQQVRQQQAALESGLKTL 251 +GGK LLL++SGIPALQA L + +VP AR HE LLF +I +++Q + A ++ L L Sbjct: 189 DGGKKLLLEKSGIPALQAALHVELARVPDARAHETALLFGQIRDELQQLRVARQTSLDIL 248 Query: 252 RQRQQQQRQDFEQGLQAVLEKVHQDLLPIVEFQGDDPALVPDTAADEFKLTAGKRERARI 311 R QQQQRQDF++ L AV++KV D+ ++ G D A+VPDTA D + +TAGKRERA I Sbjct: 249 RTTQQQQRQDFDRSLAAVIDKVSGDIEAMLNALGTDHAIVPDTARDAYAITAGKRERAHI 308 Query: 312 HVAYSRACIAIRAHLIQHGVEGLPASQQTSVASLDTVMVAVLGISIKYRADLRRRFCEPA 371 +AYSRACI I A L HGV GLPA QQT+ SL++VM+AV+G+S+K+R DLRR FCE Sbjct: 309 QIAYSRACIEIDAMLAGHGVIGLPAEQQTAAKSLNSVMIAVMGVSVKFRKDLRRMFCEAT 368 Query: 372 GQAHLKEAFLHYYELSEDRQALQQQIA 398 G+ ++ F HYYELS DR+AL QIA Sbjct: 369 GRERMQREFTHYYELSADRKALAAQIA 395 >ref|YP_003605881.1| hypothetical protein BC1002_2312 [Burkholderia sp. CCGE1002] gb|ADG16370.1| conserved hypothetical protein [Burkholderia sp. CCGE1002] Length = 418 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 224/403 (55%), Positives = 283/403 (70%), Gaps = 1/403 (0%) Query: 12 ASEILAVVPGRAHDLARLRVLAQVHAAPTVTVVGKYNHGKSRLLNELMGRDVFAVADRRE 71 A ++ +V+P RAHDLARL +L + P VTVVGKYNHGKS LLNEL+GRD FAV+DRRE Sbjct: 10 AHDVASVLPDRAHDLARLLILID-DSEPVVTVVGKYNHGKSSLLNELLGRDAFAVSDRRE 68 Query: 72 TVTLSEHHHAELRWLDAPGLDADVALQDDSHAQEATWLQADVRLFVHAAKEGELDAAERH 131 TV LS+ H +RWLDAPGLDADV +DD A A WL++D+RLFVHAAKEGELD E Sbjct: 69 TVRLSDSVHQGVRWLDAPGLDADVGSEDDREALRAAWLKSDIRLFVHAAKEGELDVKELT 128 Query: 132 LLQALREDQQRTRRQTLFVLTQVDQMSDDEQLAKVSAAIVAQAPGLTLHPVSSTRHRSGV 191 LL L D+ RT RQTLFVL+QVDQ+ DD L + AAI Q PG L+ VSS RHR G+ Sbjct: 129 LLTELDADRVRTGRQTLFVLSQVDQLPDDAALQNIGAAIDRQMPGFALNAVSSMRHRKGL 188 Query: 192 EGGKSLLLQRSGIPALQALLREVVEQVPGARRHERNLLFTEIGQQVRQQQAALESGLKTL 251 +GGK LLL++SGIPAL LR + +VP AR HE LL EI ++++ +AA ++ L L Sbjct: 189 DGGKKLLLEKSGIPALHTALRAKLARVPDARAHEITLLIGEIRDELQRLRAARQTSLDIL 248 Query: 252 RQRQQQQRQDFEQGLQAVLEKVHQDLLPIVEFQGDDPALVPDTAADEFKLTAGKRERARI 311 R QQQQ+Q F++ L AV+ KV D+ ++ G D A+VPDTA D + +TAGK ERA I Sbjct: 249 RTTQQQQKQAFDRSLAAVIGKVSADIDAMLNALGTDHAIVPDTAKDAYAITAGKLERAHI 308 Query: 312 HVAYSRACIAIRAHLIQHGVEGLPASQQTSVASLDTVMVAVLGISIKYRADLRRRFCEPA 371 +AYSRACI I A L HGV GLPA + T+ SL++VM+AV+G+S+K+R DLRR FCE Sbjct: 309 QIAYSRACIEIDAMLTGHGVIGLPAERHTAAKSLNSVMIAVMGVSVKFRKDLRRMFCEAT 368 Query: 372 GQAHLKEAFLHYYELSEDRQALQQQIAIGEAELHAHQRAQQAL 414 G+ ++ F HY+ELS DR+AL QIA +A L A A A+ Sbjct: 369 GRERMQREFTHYFELSADRKALAAQIADTQAALVASDDAAAAM 411 >gb|AAL02148.1| unknown [Acinetobacter lwoffii K24] Length = 417 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 222/411 (54%), Positives = 282/411 (68%), Gaps = 1/411 (0%) Query: 11 LASEILAVVPGRAHDLARLRVLAQVHAAPTVTVVGKYNHGKSRLLNELMGRDVFAVADRR 70 L +I V+ RA DL RL LA P VTV+GKYNHGKSRLLNEL+G FAVAD+R Sbjct: 8 LRPDIAFVLAARADDLTRLNTLA-AGGKPVVTVIGKYNHGKSRLLNELIGEPTFAVADKR 66 Query: 71 ETVTLSEHHHAELRWLDAPGLDADVALQDDSHAQEATWLQADVRLFVHAAKEGELDAAER 130 ETV L++ +RWLDAPGLDADV +DD +A A W ++D+RLFVHAAKEGELDA E Sbjct: 67 ETVVLADRVQRGVRWLDAPGLDADVGTEDDRYALHAAWQKSDIRLFVHAAKEGELDAMEL 126 Query: 131 HLLQALREDQQRTRRQTLFVLTQVDQMSDDEQLAKVSAAIVAQAPGLTLHPVSSTRHRSG 190 LL LR+D R++RQT+FVL+QVDQ++DD +L VSAAI AQ P L+PVSSTR+R+G Sbjct: 127 ALLTELRDDGARSQRQTVFVLSQVDQLADDAELDYVSAAIRAQVPRFDLNPVSSTRYRNG 186 Query: 191 VEGGKSLLLQRSGIPALQALLREVVEQVPGARRHERNLLFTEIGQQVRQQQAALESGLKT 250 +EGGK LL+++SG+ AL A L + QVP AR HE LL EI +++ A + L Sbjct: 187 IEGGKKLLVEKSGMHALVARLDAALAQVPVARAHEIALLLGEIRDELQHLCAVRQRLLAD 246 Query: 251 LRQRQQQQRQDFEQGLQAVLEKVHQDLLPIVEFQGDDPALVPDTAADEFKLTAGKRERAR 310 LR ++QQR+ F+ GL AV+ KV +D+ ++ G D A+VPDTA D + +TAGK ERA Sbjct: 247 LRDTRRQQREGFDNGLAAVMVKVSEDIDAMLNALGTDYAIVPDTAKDAYAITAGKVERAH 306 Query: 311 IHVAYSRACIAIRAHLIQHGVEGLPASQQTSVASLDTVMVAVLGISIKYRADLRRRFCEP 370 I + YSRACI I L HGV GLP+SQQT+ SL++VM+AV+G+S+K+R DLRR FCE Sbjct: 307 IQITYSRACIEIDGFLAGHGVVGLPSSQQTAARSLNSVMIAVMGVSVKFRKDLRRMFCEA 366 Query: 371 AGQAHLKEAFLHYYELSEDRQALQQQIAIGEAELHAHQRAQQALARLREGA 421 G+ ++ F HYYELS+D Q L QIA A L A Q A AL L A Sbjct: 367 QGRERMRREFTHYYELSDDCQTLVAQIAEANAALDATQCALTALNTLEARA 417