BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1058.p         (183 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774736.1| translation initiation inhibitor protein [He...   242   2e-62
ref|YP_001773751.1| endoribonuclease L-PSP [Burkholderia cenocep...   213   1e-53
ref|YP_002153877.1| putative endoribonuclease L-psp family prote...   211   3e-53
ref|YP_621181.1| endoribonuclease L-PSP [Burkholderia cenocepaci...   211   3e-53
ref|YP_001816281.1| endoribonuclease L-PSP [Burkholderia ambifar...   211   5e-53

>ref|YP_003774736.1| translation initiation inhibitor protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62828.1| translation initiation inhibitor (endoribonuclease L-PSP family)
           protein [Herbaspirillum seropedicae SmR1]
          Length = 138

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 120/134 (89%), Positives = 125/134 (93%)

Query: 48  MSERQAIIPEGMEDVYEKIGYAPGVLVGDVLYVSGQIGRGPDMQLVEPREAQIVQAFENL 107
           MS+RQAIIP+GMEDVYEKIGYAP V VG VLYVSGQIGRGPDMQLVEPREAQIVQAFENL
Sbjct: 1   MSDRQAIIPKGMEDVYEKIGYAPAVRVGQVLYVSGQIGRGPDMQLVEPREAQIVQAFENL 60

Query: 108 KRVLEKAGGTLDDIVDLSTFHTDMRDLPLFIKVRNRYLNAYPLPAWTAIGAHMLGGAPGY 167
           K VL  AGGTLDDIVDL+TFHTDMRDLPLFIKVRNRYL+ YPLPAWTAIGAHMLGGAPGY
Sbjct: 61  KLVLATAGGTLDDIVDLTTFHTDMRDLPLFIKVRNRYLSHYPLPAWTAIGAHMLGGAPGY 120

Query: 168 IIEIKAVAHLRKKG 181
           +IEIKAVAHLR  G
Sbjct: 121 VIEIKAVAHLRPAG 134


>ref|YP_001773751.1| endoribonuclease L-PSP [Burkholderia cenocepacia MC0-3]
 gb|ACA95256.1| Endoribonuclease L-PSP [Burkholderia cenocepacia MC0-3]
          Length = 132

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 101/131 (77%), Positives = 117/131 (89%)

Query: 48  MSERQAIIPEGMEDVYEKIGYAPGVLVGDVLYVSGQIGRGPDMQLVEPREAQIVQAFENL 107
           MS+R+AIIP GME VYEKIGYAP + VGD +YVSGQIGR   MQLVE REAQIVQAFENL
Sbjct: 1   MSKREAIIPAGMEAVYEKIGYAPAIKVGDTVYVSGQIGRDAAMQLVEGREAQIVQAFENL 60

Query: 108 KRVLEKAGGTLDDIVDLSTFHTDMRDLPLFIKVRNRYLNAYPLPAWTAIGAHMLGGAPGY 167
           KRVL+  G +LDD+VDL+TFHTDMRDLPLF++VR+RY +A+PLPAWTA+GAHMLGG+PGY
Sbjct: 61  KRVLDAGGASLDDVVDLTTFHTDMRDLPLFMQVRDRYFHAHPLPAWTAVGAHMLGGSPGY 120

Query: 168 IIEIKAVAHLR 178
           I+EIKAVA LR
Sbjct: 121 IVEIKAVAVLR 131


>ref|YP_002153877.1| putative endoribonuclease L-psp family protein [Burkholderia
           cenocepacia J2315]
 emb|CAR57420.1| putative endoribonuclease L-psp family protein [Burkholderia
           cenocepacia J2315]
          Length = 132

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 100/132 (75%), Positives = 116/132 (87%)

Query: 48  MSERQAIIPEGMEDVYEKIGYAPGVLVGDVLYVSGQIGRGPDMQLVEPREAQIVQAFENL 107
           M ER+AI+P GME VYEKIGYAPG+ VGD LYVSGQIGR   MQLVE REAQIVQAFENL
Sbjct: 1   MHERKAIVPAGMEAVYEKIGYAPGLKVGDTLYVSGQIGRDAAMQLVEDREAQIVQAFENL 60

Query: 108 KRVLEKAGGTLDDIVDLSTFHTDMRDLPLFIKVRNRYLNAYPLPAWTAIGAHMLGGAPGY 167
           K+VLE AG + DD+VDL+TFHTDMRDLPLF++VR+RY +A+P PAWTA+GAHMLGGAPGY
Sbjct: 61  KQVLEAAGASFDDVVDLTTFHTDMRDLPLFMQVRDRYFDAHPRPAWTAVGAHMLGGAPGY 120

Query: 168 IIEIKAVAHLRK 179
           ++EIKAVA L +
Sbjct: 121 VVEIKAVAVLAR 132


>ref|YP_621181.1| endoribonuclease L-PSP [Burkholderia cenocepacia AU 1054]
 ref|YP_840151.1| endoribonuclease L-PSP [Burkholderia cenocepacia HI2424]
 gb|ABF76208.1| Endoribonuclease L-PSP [Burkholderia cenocepacia AU 1054]
 gb|ABK13258.1| Endoribonuclease L-PSP [Burkholderia cenocepacia HI2424]
          Length = 132

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 100/131 (76%), Positives = 117/131 (89%)

Query: 48  MSERQAIIPEGMEDVYEKIGYAPGVLVGDVLYVSGQIGRGPDMQLVEPREAQIVQAFENL 107
           MS+R+AIIP GME VYEKIGYAP + VGD +YVSGQIGR   MQLVE REAQIVQAFENL
Sbjct: 1   MSKREAIIPAGMEAVYEKIGYAPAIKVGDTVYVSGQIGRDAAMQLVEGREAQIVQAFENL 60

Query: 108 KRVLEKAGGTLDDIVDLSTFHTDMRDLPLFIKVRNRYLNAYPLPAWTAIGAHMLGGAPGY 167
           KRVL+  G +LDD+VDL+TFHTDMRDLPLF++VR+RY +A+PLPAWTA+GAHMLGG+PGY
Sbjct: 61  KRVLDAGGASLDDVVDLTTFHTDMRDLPLFMQVRDRYFHAHPLPAWTAVGAHMLGGSPGY 120

Query: 168 IIEIKAVAHLR 178
           I+EIKA+A LR
Sbjct: 121 IVEIKAMAVLR 131


>ref|YP_001816281.1| endoribonuclease L-PSP [Burkholderia ambifaria MC40-6]
 gb|ACB68728.1| Endoribonuclease L-PSP [Burkholderia ambifaria MC40-6]
          Length = 130

 Score =  211 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 100/130 (76%), Positives = 114/130 (87%)

Query: 48  MSERQAIIPEGMEDVYEKIGYAPGVLVGDVLYVSGQIGRGPDMQLVEPREAQIVQAFENL 107
           M ER+AIIP GMEDVYEKIGYAP + VGD +YVSGQIGR   MQLVE REAQIVQAFENL
Sbjct: 1   MREREAIIPAGMEDVYEKIGYAPAIKVGDTVYVSGQIGRDAAMQLVEDREAQIVQAFENL 60

Query: 108 KRVLEKAGGTLDDIVDLSTFHTDMRDLPLFIKVRNRYLNAYPLPAWTAIGAHMLGGAPGY 167
           KRVLE  G +LDD+VDL+TFHTDMRDLPLF++VR+RY +A+P PAWTA+GAHMLGG+ GY
Sbjct: 61  KRVLEAGGASLDDVVDLTTFHTDMRDLPLFMQVRDRYFHAHPRPAWTAVGAHMLGGSAGY 120

Query: 168 IIEIKAVAHL 177
           I+EIKAVA L
Sbjct: 121 IVEIKAVAVL 130