BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1051.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774729.1| LysR family transcription regulator protein ... 575 e-162 ref|YP_001630007.1| transcriptional regulator catR [Bordetella p... 519 e-145 ref|YP_004127271.1| lysr substrate-binding protein [Alicycliphil... 416 e-114 ref|YP_004388871.1| LysR family transcriptional regulator [Alicy... 408 e-112 ref|YP_914974.1| LysR family transcriptional regulator [Paracocc... 378 e-103 >ref|YP_003774729.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62821.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 300/316 (94%), Positives = 311/316 (98%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQL+LRNSRPLRLTEA Sbjct: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPVLVRKLRQHYPEV 120 GRVFYEQALQILNRL+QLKNATQQIGLNQRQTLSIGFVASTLYGGLP+LVRKLRQHYPEV Sbjct: 61 GRVFYEQALQILNRLDQLKNATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFPLAASHQ 180 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSF LA S+Q Sbjct: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFALAGSNQ 180 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGL 240 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESG+ Sbjct: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGI 240 Query: 241 CLIPASARLRNDLHYRLIDDPRATSPIILTHRINDNAWYIEAIKQLVADMYAERPAWLDI 300 CLIPASARLRNDLHYRLIDD RATSPIILTHRINDNAWYIEA+K+LVADMYAE PAWLDI Sbjct: 241 CLIPASARLRNDLHYRLIDDARATSPIILTHRINDNAWYIEAVKRLVADMYAEHPAWLDI 300 Query: 301 ETSSFPATGFPNPERR 316 +T+SFPATGFP P+R+ Sbjct: 301 DTNSFPATGFPIPQRK 316 >ref|YP_001630007.1| transcriptional regulator catR [Bordetella petrii DSM 12804] emb|CAP41737.1| transcriptional regulator catR [Bordetella petrii] Length = 332 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 266/317 (83%), Positives = 291/317 (91%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 MD+RQL+YFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQL+LRNSRPLRLTEA Sbjct: 15 MDVRQLRYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 74 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPVLVRKLRQHYPEV 120 GR FYEQALQI+NRL+QLKN T+QIGLNQRQTLSIGFVASTLYGGLP+LVRKLRQ YPEV Sbjct: 75 GRSFYEQALQIINRLDQLKNTTRQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQRYPEV 134 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFPLAASHQ 180 DIQL+ELTSMQQFAALKSGRIDVGFGRIRSND++V RIVLREE+LVLA+PP PL + Sbjct: 135 DIQLVELTSMQQFAALKSGRIDVGFGRIRSNDSSVERIVLREERLVLALPPGSPLTEGDE 194 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGL 240 +V+LK + GQKLIVYPKEPRPSFADHILSLLNDQ I P+E+HEVREIQTALGLVAAESG+ Sbjct: 195 QVTLKALEGQKLIVYPKEPRPSFADHILSLLNDQAIRPSEIHEVREIQTALGLVAAESGI 254 Query: 241 CLIPASARLRNDLHYRLIDDPRATSPIILTHRINDNAWYIEAIKQLVADMYAERPAWLDI 300 CLIPASARLRNDLHYRLIDD RATSPIILTHRINDN WYI+A+KQ+VADMYAE+PAWLD+ Sbjct: 255 CLIPASARLRNDLHYRLIDDTRATSPIILTHRINDNGWYIDAVKQVVADMYAEKPAWLDV 314 Query: 301 ETSSFPATGFPNPERRE 317 E + FP P P E Sbjct: 315 EHNIFPKVDLPKPTSHE 331 >ref|YP_004127271.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] gb|ADV00384.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] Length = 316 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 206/298 (69%), Positives = 262/298 (87%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 M++RQ++YFVAVA TRNFTRA+EQ+HIAQPPLSRQIQ LE+ELGVQLI RNSRP+RLTEA Sbjct: 11 MELRQMRYFVAVATTRNFTRAAEQMHIAQPPLSRQIQQLEDELGVQLIQRNSRPVRLTEA 70 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPVLVRKLRQHYPEV 120 GR+ YEQALQ+L+R+EQ+KNA +Q+G N RQ++S+G+VASTLYGGLPV+VR LRQ YP Sbjct: 71 GRLVYEQALQVLHRVEQMKNAARQVGSNHRQSISVGYVASTLYGGLPVMVRMLRQRYPHT 130 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFPLAASHQ 180 D+ L+EL S+QQ LKSGRID+GFGR+R+ND++V+R VL EE+LVLA+ PS PLAA ++ Sbjct: 131 DVHLVELGSIQQIHELKSGRIDLGFGRLRTNDSSVSRTVLSEERLVLAMAPSSPLAAENR 190 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGL 240 R++L+ V Q+LIVYPKEPRPS+ADH+L LL+DQ I PAE+HEVRE+Q ALGLVAAE G+ Sbjct: 191 RINLQTVADQRLIVYPKEPRPSYADHVLGLLHDQGIQPAEIHEVRELQAALGLVAAEMGV 250 Query: 241 CLIPASARLRNDLHYRLIDDPRATSPIILTHRINDNAWYIEAIKQLVADMYAERPAWL 298 C++P +ARLR DL YRLIDD RATSPIIL+HR+ND++WYI A+KQL+A+MYA+ P ++ Sbjct: 251 CIVPTAARLRTDLVYRLIDDERATSPIILSHRLNDDSWYIAAVKQLIAEMYAQNPPFI 308 >ref|YP_004388871.1| LysR family transcriptional regulator [Alicycliphilus denitrificans K601] gb|AEB85355.1| transcriptional regulator, LysR family [Alicycliphilus denitrificans K601] Length = 301 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 203/293 (69%), Positives = 257/293 (87%) Query: 6 LKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEAGRVFY 65 ++YFVAVA TRNFTRA+EQ+HIAQPPLSRQIQ LE+ELGVQLI RNSRP+RLTEAGR+ Y Sbjct: 1 MRYFVAVATTRNFTRAAEQMHIAQPPLSRQIQQLEDELGVQLIQRNSRPVRLTEAGRLVY 60 Query: 66 EQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPVLVRKLRQHYPEVDIQLL 125 EQALQ+L+R+EQ+KNA +Q+G N RQ++S+G+VASTLYGGLPV+VR LRQ YP D+ L+ Sbjct: 61 EQALQVLHRVEQMKNAARQVGSNHRQSISVGYVASTLYGGLPVMVRMLRQRYPHTDVHLV 120 Query: 126 ELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFPLAASHQRVSLK 185 EL S+QQ LKSGRID+GFGR+R+ND++V+R VL EE+LVLA+ PS PLAA ++R++L+ Sbjct: 121 ELGSIQQIHELKSGRIDLGFGRLRTNDSSVSRTVLSEERLVLAMAPSSPLAAENRRINLQ 180 Query: 186 EVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGLCLIPA 245 V Q+LIVYPKEPRPS+ADH+L LL+DQ I PAE+HEVRE+Q ALGLVAAE G+C++P Sbjct: 181 TVADQRLIVYPKEPRPSYADHVLGLLHDQGIQPAEIHEVRELQAALGLVAAEMGVCIVPT 240 Query: 246 SARLRNDLHYRLIDDPRATSPIILTHRINDNAWYIEAIKQLVADMYAERPAWL 298 +ARLR DL YRLIDD RATSPIIL+HR+ND++WYI A+KQL+A+MYA+ P ++ Sbjct: 241 AARLRTDLVYRLIDDERATSPIILSHRLNDDSWYIAAVKQLIAEMYAQNPPFI 293 >ref|YP_914974.1| LysR family transcriptional regulator [Paracoccus denitrificans PD1222] gb|ABL69278.1| transcriptional regulator, LysR family [Paracoccus denitrificans PD1222] Length = 319 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 199/314 (63%), Positives = 250/314 (79%), Gaps = 1/314 (0%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 MD+RQL+YF AVA RNFTRA++ L+IAQPPLSRQIQLLEEELGV LILR SRP++LT+A Sbjct: 1 MDLRQLRYFTAVARERNFTRAAQSLNIAQPPLSRQIQLLEEELGVVLILRKSRPIKLTDA 60 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPVLVRKLRQHYPEV 120 GR+FYEQALQ+L R++Q+K+AT+++GLN+ + LSIGFVASTLYGGLP LVRKLRQ+ PE+ Sbjct: 61 GRLFYEQALQVLGRVDQMKDATRRVGLNRNRVLSIGFVASTLYGGLPSLVRKLRQNVPEL 120 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFPLAASHQ 180 DIQLLE+ S+QQ ALK GRID+GFGR+R +D V VLREE+LV A+P LA Sbjct: 121 DIQLLEMLSIQQIPALKEGRIDIGFGRLRHSDPNVVGTVLREERLVAALPQDTSLARDPA 180 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGL 240 + L + GQKLIVYPKEPRPS+AD I++LL ++ I A+V EVREIQTALGLVAA+SG+ Sbjct: 181 PLPLAALAGQKLIVYPKEPRPSYADQIINLLQEEGIRTADVLEVREIQTALGLVAADSGI 240 Query: 241 CLIPASAR-LRNDLHYRLIDDPRATSPIILTHRINDNAWYIEAIKQLVADMYAERPAWLD 299 C+IP+SAR +R+D+ YR+ID PRATSP+IL HR D + Y++ +KQL+ DMYAE P WL+ Sbjct: 241 CIIPSSARQMRSDVRYRIIDSPRATSPVILNHRAGDTSRYLDLVKQLIRDMYAENPVWLE 300 Query: 300 IETSSFPATGFPNP 313 P G P Sbjct: 301 ANNLRAPIAGEEGP 314