BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1050.p         (95 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774728.1| muconolactone delta-isomerase [Herbaspirillu...   185   2e-45
ref|YP_001753038.1| muconolactone delta-isomerase [Methylobacter...   139   1e-31
ref|YP_972255.1| muconolactone delta-isomerase [Acidovorax citru...   139   2e-31
ref|YP_004236293.1| muconolactone delta-isomerase [Acidovorax av...   138   3e-31
gb|AAG42025.1|AF042280_3 muconolactone isomerase [Cupriavidus ne...   135   2e-30

>ref|YP_003774728.1| muconolactone delta-isomerase [Herbaspirillum seropedicae SmR1]
 gb|ADJ62820.1| muconolactone delta-isomerase protein [Herbaspirillum seropedicae
          SmR1]
          Length = 95

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MLFMVQMQVNIPATLDKAVADQLKKDEKEMSQKLQREGKWRDLWRVVGQYANVSIFNVSG 60
          MLFMVQMQVNIPATLDKAVADQLKKDEKEMSQKLQREGKWRDLWRVVGQYANVSIFNVSG
Sbjct: 1  MLFMVQMQVNIPATLDKAVADQLKKDEKEMSQKLQREGKWRDLWRVVGQYANVSIFNVSG 60

Query: 61 NDELHNILSALPLYPFMTISVTPLTQHPSAIAQIG 95
          NDELHNILSALPLYPFMTISVTPLTQHPSAIAQIG
Sbjct: 61 NDELHNILSALPLYPFMTISVTPLTQHPSAIAQIG 95


>ref|YP_001753038.1| muconolactone delta-isomerase [Methylobacterium radiotolerans JCM
          2831]
 gb|ACB22355.1| muconolactone delta-isomerase [Methylobacterium radiotolerans JCM
          2831]
          Length = 94

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/92 (69%), Positives = 80/92 (86%)

Query: 1  MLFMVQMQVNIPATLDKAVADQLKKDEKEMSQKLQREGKWRDLWRVVGQYANVSIFNVSG 60
          ML+MV MQVNIPA+L K+ AD+LK +EK  +QKLQ++G+WR LWR+ GQYAN S+F+V+G
Sbjct: 1  MLYMVHMQVNIPASLPKSEADRLKAEEKAYAQKLQQDGRWRHLWRIAGQYANYSVFDVAG 60

Query: 61 NDELHNILSALPLYPFMTISVTPLTQHPSAIA 92
          NDELH +LS+LPLYP+M ISVTPL QHPSAIA
Sbjct: 61 NDELHEVLSSLPLYPYMAISVTPLAQHPSAIA 92


>ref|YP_972255.1| muconolactone delta-isomerase [Acidovorax citrulli AAC00-1]
 gb|ABM34481.1| muconolactone delta-isomerase [Acidovorax citrulli AAC00-1]
          Length = 94

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/93 (69%), Positives = 77/93 (82%)

Query: 1  MLFMVQMQVNIPATLDKAVADQLKKDEKEMSQKLQREGKWRDLWRVVGQYANVSIFNVSG 60
          MLFM +M V IP+TL   VAD++K+ EKE SQ+LQR+GKWR LWRVVG+YANVSIF+VSG
Sbjct: 1  MLFMAEMTVRIPSTLAPEVADEIKRKEKEYSQQLQRDGKWRHLWRVVGEYANVSIFDVSG 60

Query: 61 NDELHNILSALPLYPFMTISVTPLTQHPSAIAQ 93
          NDELH ILS LPL+P+M I VTPL  HPS+I Q
Sbjct: 61 NDELHTILSGLPLFPYMEIKVTPLANHPSSIVQ 93


>ref|YP_004236293.1| muconolactone delta-isomerase [Acidovorax avenae subsp. avenae
          ATCC 19860]
 gb|ADX47726.1| muconolactone delta-isomerase [Acidovorax avenae subsp. avenae
          ATCC 19860]
          Length = 94

 Score =  138 bits (348), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/93 (69%), Positives = 77/93 (82%)

Query: 1  MLFMVQMQVNIPATLDKAVADQLKKDEKEMSQKLQREGKWRDLWRVVGQYANVSIFNVSG 60
          MLFM +M V IP+TL   VAD++K+ EKE SQ+LQR+GKWR LWRVVG+YANVSIF+VSG
Sbjct: 1  MLFMAEMTVRIPSTLAPEVADEIKRKEKEYSQQLQRDGKWRHLWRVVGEYANVSIFDVSG 60

Query: 61 NDELHNILSALPLYPFMTISVTPLTQHPSAIAQ 93
          NDELH ILS LPL+P+M I VTPL  HPS+I Q
Sbjct: 61 NDELHAILSGLPLFPYMEIKVTPLANHPSSIVQ 93


>gb|AAG42025.1|AF042280_3 muconolactone isomerase [Cupriavidus necator]
          Length = 94

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/92 (71%), Positives = 75/92 (81%)

Query: 1  MLFMVQMQVNIPATLDKAVADQLKKDEKEMSQKLQREGKWRDLWRVVGQYANVSIFNVSG 60
          MLFM +M V IPA+LD  + +QLK DEK MSQ+LQREGKWR LWRVVGQYANVSIF+V  
Sbjct: 1  MLFMAEMTVKIPASLDPQLVEQLKADEKAMSQRLQREGKWRHLWRVVGQYANVSIFDVGD 60

Query: 61 NDELHNILSALPLYPFMTISVTPLTQHPSAIA 92
          NDELH +L+ LPLYP+M I VTPL QH SAIA
Sbjct: 61 NDELHTLLTILPLYPYMEIKVTPLAQHGSAIA 92