BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1034.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AEK80395.1| YhjQ [Herbaspirillum rubrisubalbicans M1] 314 9e-84 gb|EGH65994.1| cell morphology protein [Pseudomonas syringae pv.... 79 6e-13 gb|EGH07542.1| cell morphology protein [Pseudomonas syringae pv.... 79 6e-13 ref|ZP_03395446.1| cell morphology protein [Pseudomonas syringae... 71 2e-10 gb|EGH99374.1| cell morphology protein [Pseudomonas syringae pv.... 71 2e-10 >gb|AEK80395.1| YhjQ [Herbaspirillum rubrisubalbicans M1] Length = 441 Score = 314 bits (805), Expect = 9e-84, Method: Composition-based stats. Identities = 236/244 (96%), Positives = 241/244 (98%) Query: 1 MGNDISNLLSKFGATVDGYLEIEAAINYKEPSRKAKAPQVAAPAEPAAAAPAPVGEAGAT 60 MGNDISNLLSKFGATVDGYLE+EAAI+YKEPSRKAKAPQVAAPAEP AAAPAPVGEAGAT Sbjct: 1 MGNDISNLLSKFGATVDGYLEVEAAIDYKEPSRKAKAPQVAAPAEPGAAAPAPVGEAGAT 60 Query: 61 APLPQDRSVSAPQRIEPVIEPVMAPIQEAPIIPVSEPVVAPVVAASPIQSPSQPTVQSPV 120 APLPQDRSVSAPQRIEPVIEPVMAPIQEAPIIPVSEPVVAPVVAASPIQSPSQPTVQSPV Sbjct: 61 APLPQDRSVSAPQRIEPVIEPVMAPIQEAPIIPVSEPVVAPVVAASPIQSPSQPTVQSPV 120 Query: 121 QSNASRVPPSVVDVAAPVSAKIASLVPPAPPAVPTLLRSMLGEAAQQRQAQQEASPEGGS 180 QSNASRVPPSVVDVAAPVSAKIASLVPPAPPAVP LLRSMLGEAAQQRQAQQEASPEGGS Sbjct: 121 QSNASRVPPSVVDVAAPVSAKIASLVPPAPPAVPNLLRSMLGEAAQQRQAQQEASPEGGS 180 Query: 181 AGLSYGPPPSTPAHVIAVVSPKGGVGKTTLCSALACSLARHGRVIAIDLDPQNALQYHLG 240 AGLSYGPPPSTPAHVIAVVSPKGGVGKTTLCSALACSLARHGRVIA+DLDPQNALQYHL Sbjct: 181 AGLSYGPPPSTPAHVIAVVSPKGGVGKTTLCSALACSLARHGRVIAVDLDPQNALQYHLC 240 Query: 241 VSAD 244 V+A+ Sbjct: 241 VNAE 244 >gb|EGH65994.1| cell morphology protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 378 Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 109/252 (43%), Gaps = 79/252 (31%) Query: 2 GNDISNLLSKFGATVDGYLEIEAAINYKEPSRKAKAPQVAAPAEPAAAAPAPVGEAGATA 61 +D++NL +FGA+ DGYLEI+ +++Y+E S +T Sbjct: 3 ADDVANLFQRFGASSDGYLEIDNSLDYQESS------------------------VSSTP 38 Query: 62 PLPQDRSVSAPQRIEPVIEPVMAPIQEAPIIPVSEPVVAPVVAASPIQSPSQPTVQSPVQ 121 + R+ S P R QP P Q Sbjct: 39 SVALQRATSQPSR-------------------------------------EQPCSTLPAQ 61 Query: 122 SNASRVPPSVVDVAAPVSAKIASLVPPAPPAVPTLLRSMLGEAAQQRQAQQEA-SPEGGS 180 +NA P+ + + +IA+ L +L EA Q RQA+ +A + E + Sbjct: 62 NNA----PAPDSITPDKTRRIAA----------DTLAKLLAEAVQARQAEAQARNNEALA 107 Query: 181 AGLSYGPPPSTPAHVIAVVSPKGGVGKTTLCSALACSLAR--HGRVIAIDLDPQNALQYH 238 + G TP HVIAVVS KGGVGK+TL +AL SL + G+ +AIDLDPQNALQ+H Sbjct: 108 QSMGKGQLSRTPVHVIAVVSAKGGVGKSTLSAALT-SLVKVPGGQTLAIDLDPQNALQHH 166 Query: 239 LGVSADAGSCRG 250 L S D G Sbjct: 167 LNASPDVAGLGG 178 >gb|EGH07542.1| cell morphology protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 378 Score = 79.3 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 109/252 (43%), Gaps = 79/252 (31%) Query: 2 GNDISNLLSKFGATVDGYLEIEAAINYKEPSRKAKAPQVAAPAEPAAAAPAPVGEAGATA 61 +D++NL +FGA+ DGYLEI+ +++Y+E S +T Sbjct: 3 ADDVANLFQRFGASSDGYLEIDNSLDYQESS------------------------VSSTP 38 Query: 62 PLPQDRSVSAPQRIEPVIEPVMAPIQEAPIIPVSEPVVAPVVAASPIQSPSQPTVQSPVQ 121 + R+ S P R QP P Q Sbjct: 39 SVALQRATSQPSR-------------------------------------EQPCSTLPAQ 61 Query: 122 SNASRVPPSVVDVAAPVSAKIASLVPPAPPAVPTLLRSMLGEAAQQRQAQQEA-SPEGGS 180 +NA P+ + + +IA+ L +L EA Q RQA+ +A + E + Sbjct: 62 NNA----PAPDSITPDKTRRIAA----------DTLAKLLAEAVQARQAEAQARNNEALA 107 Query: 181 AGLSYGPPPSTPAHVIAVVSPKGGVGKTTLCSALACSLAR--HGRVIAIDLDPQNALQYH 238 + G TP HVIAVVS KGGVGK+TL +AL SL + G+ +AIDLDPQNALQ+H Sbjct: 108 QSMGKGQLSRTPVHVIAVVSAKGGVGKSTLSAALT-SLVKVPGGQTLAIDLDPQNALQHH 166 Query: 239 LGVSADAGSCRG 250 L S D G Sbjct: 167 LNASPDVAGLGG 178 >ref|ZP_03395446.1| cell morphology protein [Pseudomonas syringae pv. tomato T1] ref|ZP_07231486.1| cell morphology protein [Pseudomonas syringae pv. tomato Max13] ref|ZP_07251880.1| cell morphology protein [Pseudomonas syringae pv. tomato K40] ref|ZP_07256896.1| cell morphology protein [Pseudomonas syringae pv. tomato NCPPB 1108] gb|EEB61685.1| cell morphology protein [Pseudomonas syringae pv. tomato T1] Length = 379 Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 15/159 (9%) Query: 96 EPVVAPVVAASPIQSPSQPTVQSP-VQSNASRVPPSVVDVAAPVSAKIASLVPPAPPAVP 154 E V+ + + ++ SQP+++ P + +A P+ + + +IA+ Sbjct: 32 ESSVSSTPSVALQRATSQPSIEQPCAEQSAQNNAPAPDSITPDKTRRIAA---------- 81 Query: 155 TLLRSMLGEAAQQRQAQQEA-SPEGGSAGLSYGPPPSTPAHVIAVVSPKGGVGKTTLCSA 213 L +L EA Q RQA+ +A + E + + TPAHVIAVVS KGGVGK+TL +A Sbjct: 82 DTLAKLLAEAVQARQAEAQARNNEALAQSMGKEQLSRTPAHVIAVVSAKGGVGKSTLSAA 141 Query: 214 LACSLAR--HGRVIAIDLDPQNALQYHLGVSADAGSCRG 250 L SL + G+ +AIDLDPQ+ALQ+HL S D G Sbjct: 142 LT-SLVKVPGGQTLAIDLDPQDALQHHLNASPDVAGLGG 179 >gb|EGH99374.1| cell morphology protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 381 Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 15/159 (9%) Query: 96 EPVVAPVVAASPIQSPSQPTVQSP-VQSNASRVPPSVVDVAAPVSAKIASLVPPAPPAVP 154 E V+ + + ++ SQP+++ P + +A P+ + + +IA+ Sbjct: 32 ESSVSSTPSVALQRATSQPSIEQPCAEQSAQNNAPAPDSITPDKTRRIAA---------- 81 Query: 155 TLLRSMLGEAAQQRQAQQEA-SPEGGSAGLSYGPPPSTPAHVIAVVSPKGGVGKTTLCSA 213 L +L EA Q RQA+ +A + E + + TPAHVIAVVS KGGVGK+TL +A Sbjct: 82 DTLAKLLAEAVQARQAEAQARNNEALAQSMGKEQLSRTPAHVIAVVSAKGGVGKSTLSAA 141 Query: 214 LACSLAR--HGRVIAIDLDPQNALQYHLGVSADAGSCRG 250 L SL + G+ +AIDLDPQ+ALQ+HL S D G Sbjct: 142 LT-SLVKVPGGQTLAIDLDPQDALQHHLNASPDVAGLGG 179