BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1032.p         (780 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774721.1| ATP-dependent Rad3-related DNA helicase c2 [...  1189   0.0  
ref|YP_004752764.1| DinG family ATP-dependent helicase [Collimon...   942   0.0  
ref|ZP_08274812.1| DinG family ATP-dependent helicase [Oxalobact...   940   0.0  
ref|YP_004473741.1| helicase c2 [Pseudomonas fulva 12-X] >gi|333...   915   0.0  
ref|YP_981222.1| DEAD_2 domain-containing protein [Polaromonas n...   904   0.0  

>ref|YP_003774721.1| ATP-dependent Rad3-related DNA helicase c2 [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62813.1| ATP-dependent Rad3-related DNA helicase c2 protein [Herbaspirillum
           seropedicae SmR1]
          Length = 763

 Score = 1189 bits (3075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 610/744 (81%), Positives = 666/744 (89%)

Query: 21  APRYTVSVRALCEFTAKQGDLDLRFTPTPTAQEGIAGHAIVAQRRGEGYLSEVTLSADHG 80
           A RYTVSVRALCEFTAK GDLDLRFTPTPTA++G+ GHAIVA RRGE Y SE+ L+ DHG
Sbjct: 9   ARRYTVSVRALCEFTAKAGDLDLRFTPTPTARQGMEGHAIVASRRGEHYQSELALAIDHG 68

Query: 81  ALHVRGRADGYDPARQLLEEVKTYRGQLSSLPDNHRHLHWAQLRVYGHLMCEREGLARIH 140
           ALHVRGRADGYD  RQLLEEVKTYRGQL+S+PDNHRHLHWAQLRVYGHL+C+ +GL R++
Sbjct: 69  ALHVRGRADGYDADRQLLEEVKTYRGQLASIPDNHRHLHWAQLRVYGHLLCQAQGLERVN 128

Query: 141 LALVYFDIGSQQETVLEETRSREELATLFAAQCERFMCWAEQELAHRAARDTALQTLRFP 200
           LALVYF+IGSQQET LEE+RSREELA LF A CERF+ WA QELAHR ARD AL+ LRFP
Sbjct: 129 LALVYFEIGSQQETRLEESRSREELAELFGALCERFIGWAAQELAHRQARDAALEQLRFP 188

Query: 201 HGDFRPGQRQLAEAVFRAQTGRRSLLAQAPTGIGKTLGTLFPALKAAPAQRLDKILFLAA 260
           HGDFRPGQRQLAEAVFRA  GRRSLLAQAPTGIGKTLGTLFPALKAAP Q+LDK+LFLAA
Sbjct: 189 HGDFRPGQRQLAEAVFRAHAGRRSLLAQAPTGIGKTLGTLFPALKAAPRQQLDKVLFLAA 248

Query: 261 KTPGRQLALDAAATLKDHGELPLRVLELCARDKACEYPDRLCRGDSCPLAQGFYDRLPAA 320
           KTPGRQLALDAAATLK  G LPLRVLEL AR+KACE+P+RLCRGDSCPLAQGFYDRL  A
Sbjct: 249 KTPGRQLALDAAATLKGQGVLPLRVLELSAREKACEHPERLCRGDSCPLAQGFYDRLAQA 308

Query: 321 RAACLSQPLLDREHLRSVALQHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLYGMAQA 380
           RAACL  PLLDR  LR +AL HQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLY MAQA
Sbjct: 309 RAACLDAPLLDRASLRQIALAHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLYAMAQA 368

Query: 381 HDWRVSVLADEAHNLVSRARSMYSAQLSRASLRAARAVAPPSIAKPLERLGRAWTAAGKK 440
           HDWRVSVLADEAHNLV+RAR MYSAQLSRASLRAARAVAP ++AK LE++GRAW+A GK+
Sbjct: 369 HDWRVSVLADEAHNLVARARGMYSAQLSRASLRAARAVAPAAVAKLLEKIGRAWSAIGKQ 428

Query: 441 ADLPYQVLEAPPAKFVEALSSSVGAISDFLAQVAVPLDPPLRDFYFDAMAFVRLAESFGP 500
           A LPYQVLEA P +F+E LS++  AISD LAQVAVPL+PPLRDF+ +AMAFVRLAESFGP
Sbjct: 429 ALLPYQVLEAMPPRFIETLSAANNAISDHLAQVAVPLEPPLRDFHLEAMAFVRLAESFGP 488

Query: 501 HSLFDLTREDERNTVLCIRNVVPAPFLGPRFAFAHATTLFSATLAPWNYFADLLGMPANT 560
           HSL DLTR+DERNTVL +RNVVPAPFLGPRFA AHATTLFSATL PW+YFADLLGMP +T
Sbjct: 489 HSLLDLTRQDERNTVLAVRNVVPAPFLGPRFAQAHATTLFSATLGPWHYFADLLGMPKDT 548

Query: 561 AWIDVESPFQASQLQVKVAHQISTTWQRRAASIAPICELMARQYEERPGNYLAFFSSFDY 620
           AWIDVESPF ASQL+V+VA  IST WQRR+ASIAPI  LMARQ+ +RPGNYLAFFSSFDY
Sbjct: 549 AWIDVESPFHASQLEVRVAQDISTRWQRRSASIAPITALMARQFHQRPGNYLAFFSSFDY 608

Query: 621 LQQARDAFARAHPHIATWQQSRRMSETDRDAFLARFESAGQGIGFAVLGGSFGEGVDLPG 680
           LQQA  AF RAHP I TWQQSR MSE +R+AFLARF   G+GIGFAVLGGSFGEGVDLPG
Sbjct: 609 LQQALAAFTRAHPDIPTWQQSRGMSEAEREAFLARFVVGGRGIGFAVLGGSFGEGVDLPG 668

Query: 681 DRLIGAFVATLGLPQFNPVNEQLRERMEQLFGCGYDYTYLYPGMQKVVQAAGRVIRTETD 740
           +RLIGAFVATLGLPQ N VNEQLR RM+ LFG GYDYTYLYPG+QKVVQAAGRVIRTE+D
Sbjct: 669 ERLIGAFVATLGLPQVNEVNEQLRLRMQALFGAGYDYTYLYPGLQKVVQAAGRVIRTESD 728

Query: 741 QGTVWLIDQRFGRPEVRALLPAWW 764
           QG VWLID+RF +PEV+ALLP+WW
Sbjct: 729 QGVVWLIDERFAQPEVQALLPSWW 752


>ref|YP_004752764.1| DinG family ATP-dependent helicase [Collimonas fungivorans Ter331]
 gb|AEK61941.1| DinG family ATP-dependent helicase [Collimonas fungivorans Ter331]
          Length = 757

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/756 (61%), Positives = 562/756 (74%), Gaps = 1/756 (0%)

Query: 14  GAAQEQSAPRYTVSVRALCEFTAKQGDLDLRFTPTPTAQEGIAGHAIVAQRRGEGYLSEV 73
           G A   S P Y V+VRALCEFTAKQGDLDLRFTP PTA EGIAGHA VA RR  GY  E+
Sbjct: 2   GGAVRVSEPAYVVAVRALCEFTAKQGDLDLRFTPAPTALEGIAGHATVASRRAAGYEKEI 61

Query: 74  TLSADHGALHVRGRADGYDPARQLLEEVKTYRGQLSSLPDNHRHLHWAQLRVYGHLMCER 133
           +LS   G L VRGRADGYDPA   LEE+KT+RG L  +PDNHRHLHWAQ+R+YGHL+C+ 
Sbjct: 62  SLSGRCGPLLVRGRADGYDPALNRLEEIKTFRGDLERMPDNHRHLHWAQVRIYGHLLCQA 121

Query: 134 EGLARIHLALVYFDIGSQQETVLEETRSREELATLFAAQCERFMCWAEQELAHRAARDTA 193
             L  + LALVY+DIG Q+ET+L E  +   L   F  QC RF+ WA+QE+AHRAARD  
Sbjct: 122 RQLPELQLALVYYDIGRQKETLLTECATAAGLQQFFDDQCGRFLAWAQQEMAHRAARDEQ 181

Query: 194 LQTLRFPHGDFRPGQRQLAEAVFRAQTGRRSLLAQAPTGIGKTLGTLFPALKAAPAQRLD 253
           L  LRFPH DFRPGQR LAEAV++  +  R LLAQAPTGIGKT+G+LFP LKA+P Q LD
Sbjct: 182 LTALRFPHADFRPGQRALAEAVYKGASAGRCLLAQAPTGIGKTIGSLFPLLKASPGQGLD 241

Query: 254 KILFLAAKTPGRQLALDAAATLKDHGE-LPLRVLELCARDKACEYPDRLCRGDSCPLAQG 312
           KI FL+AKT GR LAL+A+A +K     LPLRVLEL ARDKACE+PD+ C G+SCPLAQG
Sbjct: 242 KIFFLSAKTSGRALALEASARIKHSAAGLPLRVLELVARDKACEHPDKACHGESCPLAQG 301

Query: 313 FYDRLPAARAACLSQPLLDREHLRSVALQHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGA 372
           FYDRLP AR+A ++   +DRE LR +A +H VCPYYL  ++ RWSDVIVGDYNY+FD  A
Sbjct: 302 FYDRLPQARSAAVASGAMDRESLREIAAEHGVCPYYLSQDLVRWSDVIVGDYNYYFDLSA 361

Query: 373 MLYGMAQAHDWRVSVLADEAHNLVSRARSMYSAQLSRASLRAARAVAPPSIAKPLERLGR 432
           MLYG   A+ WRV VL DEAHN++ RAR MYSA + +A+L++ R  APP + + L+R+ R
Sbjct: 362 MLYGFTIANQWRVGVLVDEAHNMIERARKMYSADMEQAALKSVRQTAPPVLKRVLDRVNR 421

Query: 433 AWTAAGKKADLPYQVLEAPPAKFVEALSSSVGAISDFLAQVAVPLDPPLRDFYFDAMAFV 492
            W A  K  +  YQ     P  F++AL  +V  I+D++ +    +D  L  FYFDAM F 
Sbjct: 422 QWNALYKTQEGEYQRYAELPDAFIQALQQAVADITDYMTEHPAAVDSRLLQFYFDAMHFT 481

Query: 493 RLAESFGPHSLFDLTREDERNTVLCIRNVVPAPFLGPRFAFAHATTLFSATLAPWNYFAD 552
           R+AE F  HSLFD+TR       LC+RN+VPA FL PRFA AH+TTLFSATL+PW++++ 
Sbjct: 482 RIAELFDSHSLFDITRHGGHGATLCLRNIVPATFLAPRFAAAHSTTLFSATLSPWHFYSK 541

Query: 553 LLGMPANTAWIDVESPFQASQLQVKVAHQISTTWQRRAASIAPICELMARQYEERPGNYL 612
            LGMP NTAW+DV SPF A QL V++   IST +Q R  S+API EL+A+QY E+PGNYL
Sbjct: 542 TLGMPDNTAWLDVPSPFTADQLSVRLVTGISTRFQHRDRSLAPIAELIAKQYTEQPGNYL 601

Query: 613 AFFSSFDYLQQARDAFARAHPHIATWQQSRRMSETDRDAFLARFESAGQGIGFAVLGGSF 672
            FFSS+DYL++    FA  +P I  WQQ+RRM E +R+ FL+RF    QG+GFAVLGG+F
Sbjct: 602 TFFSSYDYLEKVAAVFASRYPDIPLWQQARRMDEREREHFLSRFTETSQGVGFAVLGGAF 661

Query: 673 GEGVDLPGDRLIGAFVATLGLPQFNPVNEQLRERMEQLFGCGYDYTYLYPGMQKVVQAAG 732
            EG+DLPG RLIGAF+ATLGLPQ NPVNEQ+  +M++LFG GYD TYLYPG+QKVVQAAG
Sbjct: 662 AEGIDLPGARLIGAFIATLGLPQINPVNEQVMLQMDKLFGQGYDCTYLYPGLQKVVQAAG 721

Query: 733 RVIRTETDQGTVWLIDQRFGRPEVRALLPAWWVLPG 768
           RVIRT+ D+G V+LID RF R EVR LLPAWW L G
Sbjct: 722 RVIRTQQDRGVVYLIDDRFARQEVRQLLPAWWQLAG 757


>ref|ZP_08274812.1| DinG family ATP-dependent helicase [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31719.1| DinG family ATP-dependent helicase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 744

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/740 (62%), Positives = 555/740 (75%), Gaps = 1/740 (0%)

Query: 26  VSVRALCEFTAKQGDLDLRFTPTPTAQEGIAGHAIVAQRRGEGYLSEVTLSADHGALHVR 85
           V+VRALCEFTAKQGDLDLRFTP+PTAQEGIAGHA+VA RR   Y SE++L+ +HG L VR
Sbjct: 2   VAVRALCEFTAKQGDLDLRFTPSPTAQEGIAGHALVAARRSANYESEISLNGEHGLLRVR 61

Query: 86  GRADGYDPARQLLEEVKTYRGQLSSLPDNHRHLHWAQLRVYGHLMCEREGLARIHLALVY 145
           GRADGYDP    LEE+KT+RG L  +P+NHR LHWAQ R+YG LMC   G   + LALVY
Sbjct: 62  GRADGYDPTLHRLEEIKTFRGDLGRMPENHRALHWAQARIYGWLMCRERGWTELTLALVY 121

Query: 146 FDIGSQQETVLEETRSREELATLFAAQCERFMCWAEQELAHRAARDTALQTLRFPHGDFR 205
           FDI SQQETV  E  +   L   F  QC RF+ WAEQELAHR ARD A   L FPH  FR
Sbjct: 122 FDIASQQETVFTEVMTAAALEQFFVQQCARFLAWAEQELAHRQARDAAWSALVFPHPAFR 181

Query: 206 PGQRQLAEAVFRAQTGRRSLLAQAPTGIGKTLGTLFPALKAAPAQRLDKILFLAAKTPGR 265
            GQR+LA+AV++  T  R +LAQAPTGIGKT+GTLFP LKAAPAQ+LDK+ FL AKT GR
Sbjct: 182 TGQRELAQAVYQGVTSARCVLAQAPTGIGKTIGTLFPLLKAAPAQQLDKLFFLTAKTSGR 241

Query: 266 QLALDAAATLKDHG-ELPLRVLELCARDKACEYPDRLCRGDSCPLAQGFYDRLPAARAAC 324
            LAL A A LK     LPLRVLEL ARDKACE+PD+ C GDSCPLA+GFYDRLP ARAA 
Sbjct: 242 SLALGAVALLKKTTPTLPLRVLELVARDKACEHPDKACHGDSCPLAKGFYDRLPQARAAA 301

Query: 325 LSQPLLDREHLRSVALQHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLYGMAQAHDWR 384
           +         LR+VAL+H VCPYYL  ++ RWSD+++GDYNY+FD  AMLY M  A+ WR
Sbjct: 302 VRDGASGSVALRTVALEHAVCPYYLAQDLVRWSDLVIGDYNYYFDSSAMLYSMTLANQWR 361

Query: 385 VSVLADEAHNLVSRARSMYSAQLSRASLRAARAVAPPSIAKPLERLGRAWTAAGKKADLP 444
           ++VL DEAHNL+ R R MYSA+L     +  R +AP S+ K +++L R WTA  K+   P
Sbjct: 362 IAVLVDEAHNLIERGRKMYSAELDHGIFQRVRLLAPASVRKSIDKLSRCWTALLKEYAEP 421

Query: 445 YQVLEAPPAKFVEALSSSVGAISDFLAQVAVPLDPPLRDFYFDAMAFVRLAESFGPHSLF 504
           YQVL A P KFV AL   +  I +F ++    ++  L+ FYFDA+ F R+AE+FG HSL 
Sbjct: 422 YQVLPALPDKFVNALQLCITNIGEFFSEYPTRIEVDLQRFYFDAIHFARMAEAFGDHSLC 481

Query: 505 DLTREDERNTVLCIRNVVPAPFLGPRFAFAHATTLFSATLAPWNYFADLLGMPANTAWID 564
           D++R+D R+ VLC+RNV+PAPFL PRFA   +TTLFSATL+PW++++D LG+PA TAWID
Sbjct: 482 DISRQDGRDAVLCLRNVIPAPFLAPRFAATRSTTLFSATLSPWHFYSDTLGLPATTAWID 541

Query: 565 VESPFQASQLQVKVAHQISTTWQRRAASIAPICELMARQYEERPGNYLAFFSSFDYLQQA 624
           V SPF A+QL V++   IST +++RA S+ PI  LM RQY+ERPGNYL FFSSFDYLQ  
Sbjct: 542 VASPFTAAQLTVRLVSTISTRFRQRADSVDPIIALMVRQYQERPGNYLTFFSSFDYLQAV 601

Query: 625 RDAFARAHPHIATWQQSRRMSETDRDAFLARFESAGQGIGFAVLGGSFGEGVDLPGDRLI 684
                  HP +  WQQ+RRM +  R+ FLARF   G+GIGFAVLGGSFGEG+DLPGDRLI
Sbjct: 602 TARLVALHPELPIWQQARRMDDAGREDFLARFAPGGRGIGFAVLGGSFGEGIDLPGDRLI 661

Query: 685 GAFVATLGLPQFNPVNEQLRERMEQLFGCGYDYTYLYPGMQKVVQAAGRVIRTETDQGTV 744
           GAF+ATLGLPQ NPVNEQ+ +RM+Q FG GYDYTYL+PG+QKVVQAAGRVIRT +D+G V
Sbjct: 662 GAFIATLGLPQMNPVNEQIMQRMQQRFGSGYDYTYLFPGLQKVVQAAGRVIRTPSDRGIV 721

Query: 745 WLIDQRFGRPEVRALLPAWW 764
            LID R+ RP++RALLP WW
Sbjct: 722 VLIDDRYPRPQIRALLPRWW 741


>ref|YP_004473741.1| helicase c2 [Pseudomonas fulva 12-X]
 gb|AEF21647.1| helicase c2 [Pseudomonas fulva 12-X]
          Length = 790

 Score =  915 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/745 (61%), Positives = 558/745 (74%), Gaps = 5/745 (0%)

Query: 24  YTVSVRALCEFTAKQGDLDLRFTPTPTAQEGIAGHAIVAQRRGEGYLSEVTLSADHGALH 83
           Y V+VRALCEFTAK GDLDLRFTP+PTAQEG+AGHA V  RRGE Y SEV L+ ++ +L 
Sbjct: 3   YRVAVRALCEFTAKCGDLDLRFTPSPTAQEGMAGHATVVARRGEHYESEVPLAGEYTSLQ 62

Query: 84  VRGRADGYDPARQLLEEVKTYRGQLSSLPDNHRHLHWAQLRVYGHLMCEREGLARIHLAL 143
           VRGRADG+DP   LLEE+KT+RG ++ +PDNHR LHWAQ RVYG L+C+  GLA+I LA+
Sbjct: 63  VRGRADGFDPLSNLLEEIKTHRGDIARIPDNHRQLHWAQARVYGWLLCQSRGLAQIDLAV 122

Query: 144 VYFDIGSQQETVLEETRSREELATLFAAQCERFMCWAEQELAHRAARDTALQTLRFPHGD 203
           VYF++ +Q+E+V  ETR+  EL   F   C+RF+ WAEQE AHR  RDTAL  LRFPH +
Sbjct: 123 VYFNVLTQKESVFRETRTAAELQAFFETLCQRFISWAEQEQAHRLNRDTALSELRFPHAE 182

Query: 204 FRPGQRQLAEAVFRAQTGRRSLLAQAPTGIGKTLGTLFPALKAAPAQRLDKILFLAAKTP 263
           FR GQRQLAEAV+RA      L+AQA TGIGKTLGTLFP LKA P ++LD++ FL AKTP
Sbjct: 183 FRLGQRQLAEAVYRAARDGHCLMAQATTGIGKTLGTLFPQLKAFPEKQLDRLFFLTAKTP 242

Query: 264 GRQLALDAAATLKDHGELPLRVLELCARDKACEYPDRLCRGDSCPLAQGFYDRLPAARAA 323
           GRQLAL A   L+    LPLRVLE  ARDKACE+PD+ C G+SCPLA+GFYDRLPAAR A
Sbjct: 243 GRQLALHALDILRGE-SLPLRVLEHVARDKACEHPDKACHGESCPLARGFYDRLPAARQA 301

Query: 324 CLSQPLLDREHLRSVALQHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLYGMAQAHDW 383
            + +  LD+  +R +ALQH+VCPYYL  E+TRW+DV+V DYNY+FD  A+LY +   ++W
Sbjct: 302 AVERVWLDQAAVREIALQHEVCPYYLSQELTRWADVVVCDYNYYFDLSALLYSLTLINEW 361

Query: 384 RVSVLADEAHNLVSRARSMYSAQLSRASLRAARAVAPPSIAKPLERLGRAWTAAGKKADL 443
           RV++L DEAHNL+ RAR MYSA+L +A   A R+ AP  ++  L R+ R W    K+   
Sbjct: 362 RVTLLVDEAHNLIERARRMYSAELDQARFEAMRSNAPKGLSAVLTRISRHWKQLHKEQQA 421

Query: 444 PYQVLEAPPAKFVEALSSSVGAISDFLAQVAVPLDPPLRDFYFDAMAFVRLAESFGPHSL 503
            YQ    PP   + +L  +V A++D L       D  L  FY DAMAF RLAE+FGPHSL
Sbjct: 422 DYQTYPQPPDLLLLSLQKAVSALTDHLTDQPTGNDGELLQFYLDAMAFCRLAEAFGPHSL 481

Query: 504 FDLTREDE----RNTVLCIRNVVPAPFLGPRFAFAHATTLFSATLAPWNYFADLLGMPAN 559
           FD++R+ +     ++VLC+RNVVPAPFL PRF  +H+TTLFSATL+P  Y+ADLLG+P  
Sbjct: 482 FDISRQADLRGRSHSVLCLRNVVPAPFLAPRFEDSHSTTLFSATLSPARYYADLLGLPEA 541

Query: 560 TAWIDVESPFQASQLQVKVAHQISTTWQRRAASIAPICELMARQYEERPGNYLAFFSSFD 619
           T W+DVESPFQA QL+V+    +ST +Q R  S+API  LMARQ+ ERPGNYLAFFSS+ 
Sbjct: 542 TPWVDVESPFQAEQLEVQAVSNLSTRYQHRERSLAPIVALMARQFAERPGNYLAFFSSYA 601

Query: 620 YLQQARDAFARAHPHIATWQQSRRMSETDRDAFLARFESAGQGIGFAVLGGSFGEGVDLP 679
           YLQQ  + F R HP +  W Q+R+M E +R  FL  FE  GQGIGFAVLGG FGEG+DLP
Sbjct: 602 YLQQVLELFDREHPQLTRWVQARQMDEAERQQFLEHFEPGGQGIGFAVLGGVFGEGIDLP 661

Query: 680 GDRLIGAFVATLGLPQFNPVNEQLRERMEQLFGCGYDYTYLYPGMQKVVQAAGRVIRTET 739
           GDRLIGAF+ATLGLPQ NP+NEQ++ RM ++FG GYDYTYLYPG+QKVVQAAGRVIRT  
Sbjct: 662 GDRLIGAFIATLGLPQINPINEQIKLRMAEMFGSGYDYTYLYPGLQKVVQAAGRVIRTPQ 721

Query: 740 DQGTVWLIDQRFGRPEVRALLPAWW 764
           D G V L+D RF +PEVRALLP+WW
Sbjct: 722 DSGVVHLMDDRFTQPEVRALLPSWW 746


>ref|YP_981222.1| DEAD_2 domain-containing protein [Polaromonas naphthalenivorans
           CJ2]
 gb|ABM36301.1| DEAD_2 domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 773

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/762 (61%), Positives = 563/762 (73%), Gaps = 21/762 (2%)

Query: 24  YTVSVRALCEFTAKQGDLDLRFTPTPTAQEGIAGHAIVAQRRGEGYLSEVTLSADHGALH 83
           Y V+VRALCEFTAKQGDLDLRFTP+P+AQEGIAGHA+VA RR + Y  E++LS D+  L 
Sbjct: 3   YVVAVRALCEFTAKQGDLDLRFTPSPSAQEGIAGHALVASRRSKSYQPELSLSGDYQELR 62

Query: 84  VRGRADGYDPARQLLEEVKTYRGQLSSLPDNHRHLHWAQLRVYGHLMCEREGLARIHLAL 143
           VRGRADGYDP +  LEEVKT+RG L+++PDNHR LHWAQ+++YG L+C++  L  + LAL
Sbjct: 63  VRGRADGYDPDKNQLEEVKTFRGDLAAMPDNHRQLHWAQVKIYGWLLCQKLELPEVRLAL 122

Query: 144 VYFDIGSQQETVLEETRSREELATLFAAQCERFMCWAEQELAHRAARDTALQTLRFPHGD 203
           VY DIGS +ET+L E  S + L   F AQCE+F+ WA QELAHRAARD ALQ L FPH  
Sbjct: 123 VYLDIGSHEETLLTERMSADALRDFFEAQCEKFLGWARQELAHRAARDAALQALAFPHAA 182

Query: 204 FRPGQRQLAEAVFRAQTGRRSLLAQAPTGIGKTLGTLFPALKAAPAQRLDKILFLAAKTP 263
           FRPGQR LAEAV+R+    RSL+AQAPTGIGKT+GT+F  LKAAP Q LDK+ FLAAKTP
Sbjct: 183 FRPGQRDLAEAVYRSAASGRSLMAQAPTGIGKTIGTVFALLKAAPRQELDKVFFLAAKTP 242

Query: 264 GRQLALDAAATLKDHG-ELPLRVLELCARDKACEYPDRLCRGDSCPLAQGFYDRLPAARA 322
           GR+LALDA A ++     LPLRV+EL ARDKAC + D+ C GDSCPLAQGFYDRLP AR+
Sbjct: 243 GRRLALDALALIQQSAPALPLRVVELVARDKACLHLDKACHGDSCPLAQGFYDRLPQARS 302

Query: 323 ACLSQPLLDR---EHLRSVALQHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLYGMAQ 379
           A L+ P   R   E LR VAL H VCPYYL  ++ RWSDV+VGDYNY+FD  A+L+ +  
Sbjct: 303 AALADPRASRQGKEALREVALAHGVCPYYLSQDLVRWSDVVVGDYNYYFDVSALLHALTV 362

Query: 380 AHDWRVSVLADEAHNLVSRARSMYSAQLSRASLRAARAVAPPSIAKPLERLGRAWTAAGK 439
            + WRVSVL DEAHNLV RAR MYSA+L +A L   R  A P++ KPL+RL R W    K
Sbjct: 363 GNQWRVSVLVDEAHNLVDRARKMYSAELDQAELAGVRHAAAPALRKPLDRLHRVWRDVQK 422

Query: 440 ----KADLPYQVLEAPPAKFVEALSSSVGAISDFLAQVAVPLDPPLRDFYFDAMAFVRLA 495
                    YQV   PP KF+ AL  +  AI+D +      +D  L+ FYFDA+ F R+A
Sbjct: 423 DPQHDPQAAYQVRPDPPDKFLLALQQATSAITDDIEAHPTRVDAALQRFYFDALHFSRMA 482

Query: 496 ESFGPHSLFDLTREDERN-----------TVLCIRNVVPAPFLGPRFAFAHATTLFSATL 544
           ESFG HSLFD+T++               + LCIRNVVPAPFL PRFA A +  LFSATL
Sbjct: 483 ESFGGHSLFDITQDAAAGGPAHARGSRAWSRLCIRNVVPAPFLAPRFAAARSVALFSATL 542

Query: 545 APWNYFADLLGMPANTAWIDVESPFQASQLQVKVAHQISTTWQRRAASIAPICELMARQY 604
           +P NY+ADLLG+PA+TAW+DV+SPF A QL V+V   IST +Q RA S+ PI +LMARQY
Sbjct: 543 SPQNYYADLLGLPADTAWVDVQSPFMAEQLAVRVVSDISTRYQHRALSLQPIADLMARQY 602

Query: 605 EERPGNYLAFFSSFDYLQQARDAFARAHPHIATWQQSRRMSETDRDAFLARFESAGQGIG 664
            E+PGNYL F SS+DYL++  + F + +P I  W+Q+RRM E  RD FLARF +  QGIG
Sbjct: 603 AEKPGNYLVFLSSYDYLEKLAECFRQRYPLIPMWEQTRRMDEAARDEFLARFTAQTQGIG 662

Query: 665 FAVLGGSFGEGVDLPGDRLIGAFVATLGLPQFNPVNEQLRERMEQLFGC--GYDYTYLYP 722
           FAVLGGSF EG+DLPGDRLIGAF+ATLGLPQ NPVNEQ++ RM + FG    YDY+YLYP
Sbjct: 663 FAVLGGSFAEGIDLPGDRLIGAFIATLGLPQVNPVNEQIKLRMAENFGASQAYDYSYLYP 722

Query: 723 GMQKVVQAAGRVIRTETDQGTVWLIDQRFGRPEVRALLPAWW 764
           G+QKVVQAAGRVIR+ +D+G ++L+D RF RPEVR LLP WW
Sbjct: 723 GVQKVVQAAGRVIRSNSDRGVIYLMDDRFARPEVRRLLPRWW 764