BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1031.p (550 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774720.1| hypothetical protein Hsero_1296 [Herbaspiril... 678 0.0 ref|YP_001353392.1| hypothetical protein mma_1702 [Janthinobacte... 565 e-159 ref|ZP_01365216.1| hypothetical protein PaerPA_01002332 [Pseudom... 525 e-146 dbj|GAA17428.1| putative DNA helicase [Pseudomonas aeruginosa NC... 524 e-146 ref|ZP_04933580.1| hypothetical protein PA2G_00901 [Pseudomonas ... 523 e-146 >ref|YP_003774720.1| hypothetical protein Hsero_1296 [Herbaspirillum seropedicae SmR1] gb|ADJ62812.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 551 Score = 678 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 365/547 (66%), Positives = 418/547 (76%), Gaps = 7/547 (1%) Query: 9 FYYLSNFQQALDWLGQRYADLLQDEERDFLQRFPALPLAARALFVRMMMRKGEHFRASRL 68 FYYL NFQQ LDWL QR ADLL ER F+ FP LPL +RALFVRMMMRKGE FR+ RL Sbjct: 7 FYYLDNFQQVLDWLAQRCADLLDLRERQFIVAFPGLPLPSRALFVRMMMRKGELFRSGRL 66 Query: 69 AYPEIGCPLQASRDLPPEWVEQDAPLSLAQVFALATKPELLRWFGVRGALKTARKDSLLA 128 YPEIGCPL+A++ LP +WVE+DA L+L Q F+L+TKPEL+R F + GA + ARK LLA Sbjct: 67 DYPEIGCPLEAAKGLPEDWVERDAALTLEQFFSLSTKPELVRAFALTGAQRAARKTDLLA 126 Query: 129 ALVSDPQHAAPRCLSQWTAPGQGGEAVLRMRVGSLCERLRLMFFGNLRQDWSEFVLADLG 188 L +DP R L QW QG E LR+RV LC+RLRLMFFGNLRQDWSEFVLADLG Sbjct: 127 QLAADPAWDQARVLRQWCR--QGDELALRLRVQDLCDRLRLMFFGNLRQDWSEFVLADLG 184 Query: 189 TLRYEQIALSAEARGFRSRADIDLYLQLQACKQRFEAGDEVAAVLDAL----PAERFDNP 244 RYE++ALS EARGFR R+D+D YL+L AC + EAG++ A V+ AL PAE DNP Sbjct: 185 RFRYERVALSPEARGFRQRSDVDHYLRLHACSEALEAGEDAADVMAALTVAAPAEGHDNP 244 Query: 245 WLESRRERLLFQLGQHCEKAGDWPQAKQIYAACRYPGARARAIRVLEKLGRFGPAQALLH 304 WL+SR ERLLF+LGQH EK G WPQA +YA C YPGAR RA+RVLEK GR+ A AL Sbjct: 245 WLQSRYERLLFKLGQHLEKQGHWPQAHAVYARCPYPGARGRAMRVLEKQGRYAQAYALFQ 304 Query: 305 TAQQAPENDAERQQLLRIAPRLARQLGLPCSARGRAPAVERLDLLLA-PGGLRVELAVQA 363 AQ APE++AERQ L RI PRL RQLG P R R +RLDL+LA G VE AV+A Sbjct: 305 AAQAAPESEAERQHLQRIGPRLTRQLGYPPMVRVRTLPPQRLDLVLAMQAGQGVEAAVRA 364 Query: 364 HLHEPEAPVFYVENALPNALFGLLCWEAIFAAIPGAFFHPFQREPADLLSADFAARRRDV 423 HL P+APVFYVEN L ALFGLLCW+AIFAAIPGAFFHPFQREPADL SADF ARRR+ Sbjct: 365 HLQAPDAPVFYVENTLATALFGLLCWDAIFAAIPGAFFHPFQREPADLHSADFHARRREA 424 Query: 424 LARCLRRFDDGSYRAHLLAIHESKHGLQSPFVAWGWVTRELLVMALDCIPAAHLKLWCLR 483 A CL R D +R +LA +E K G+ SPFV+WG ++R LLV+ALDCIPA HLK WCLR Sbjct: 425 FAHCLARLDQERHREAILAAYEDKQGVLSPFVSWGAISRGLLVLALDCIPAWHLKHWCLR 484 Query: 484 ILDDIRENRNGFPDLIQFWPQQGRYRMIEVKGPGDRLQDNQRRWLDYCAQHAMPVAVCYL 543 IL+D+RENR+GFPDLIQFWPQQ RYRMIEVKGPGDRLQDNQ+RWL +CAQH MPVAVCYL Sbjct: 485 ILEDVRENRSGFPDLIQFWPQQRRYRMIEVKGPGDRLQDNQQRWLAFCAQHQMPVAVCYL 544 Query: 544 QWEQAAA 550 QW+Q A Sbjct: 545 QWQQQVA 551 >ref|YP_001353392.1| hypothetical protein mma_1702 [Janthinobacterium sp. Marseille] gb|ABR91012.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 551 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 305/555 (54%), Positives = 381/555 (68%), Gaps = 12/555 (2%) Query: 1 MPAVPDHRFYYLSNFQQALDWLGQRYADLLQDEERDFLQRFPALPLAARALFVRMMMRKG 60 +P +PD FYYL NFQ+ LDW+GQRY+DLL DEER F+++FP LP ++RAL VRM+MRKG Sbjct: 4 LPTLPD-PFYYLENFQRVLDWIGQRYSDLLSDEERSFIEQFPRLPQSSRALLVRMVMRKG 62 Query: 61 EHFRASRLAYPEIGCPLQASRDLPP-EWVEQDAPLSLAQVFALATKPELLRWFGVRGALK 119 E FR+ +LAY EI CP A+R L +W+ + PLS+AQ+FAL K EL++ F + A Sbjct: 63 EVFRSGKLAYAEIACPDAAARPLLELDWLRHNPPLSVAQLFALLRKAELVQAFRISAAGS 122 Query: 120 TARKDSLLAALVSDPQHAAP--RCLSQWTAPGQGGEAVLRMRVGSLCERLRLMFFGNLRQ 177 ARK L L QHA P R L QW AP E++ + V ++CERLRLMFFGNL Q Sbjct: 123 AARKGDLQEKL----QHAFPEARTLEQW-AP-DITESIYEVHVTAICERLRLMFFGNLYQ 176 Query: 178 DWSEFVLADLGTLRYEQIALSAEARGFRSRADIDLYLQLQACKQRFEAGDEVAAVLDALP 237 DWSEFVL+DLG RYEQ+ S +RGFRSR DID YL LQ C++RF+ G+ + ++ +P Sbjct: 177 DWSEFVLSDLGIYRYEQVEFSESSRGFRSRQDIDDYLHLQRCRERFDDGNYLDEIVPDIP 236 Query: 238 AERFDNPWLESRRERLLFQLGQHCEKAGDWPQAKQIYAACRYPGARARAIRVLEKLGRFG 297 + NPW+E RR +LLF+ Q E+ + A ++Y C Y GAR+R IRVLEK G Sbjct: 237 TTPYANPWMEGRRNKLLFRFAQEYERCQELDSALKLYRQCSYAGARSRTIRVLEKNDAVG 296 Query: 298 PAQALLHTAQQAPENDAERQQLLRIAPRLARQLGLPCSARGRAPAVERLDLLLA--PGGL 355 A L A PE++AE Q +LR+ PRL R+LG A G+AP +E DL L L Sbjct: 297 EALELAEAALSRPESEAEHQAVLRMLPRLRRKLGHAKLAPGKAPVIEAEDLSLPYPATAL 356 Query: 356 RVELAVQAHLHEPEAPVFYVENALPNALFGLLCWEAIFAAIPGAFFHPFQREPADLLSAD 415 VE VQAHL EAPVFYVEN L N+LFGLLCW AIFAA+PGAFFHPF + P DL SAD Sbjct: 357 SVEQMVQAHLSRCEAPVFYVENTLINSLFGLLCWPAIFAALPGAFFHPFHQGPVDLHSAD 416 Query: 416 FAARRRDVLARCLRRFDDGSYRAHLLAIHESKHGLQSPFVAWGWVTRELLVMALDCIPAA 475 F +R+D+ +CL R DD SYR ++ +K G+QSPFV WG + LL +AL CIPAA Sbjct: 417 FVQKRQDIFNQCLARLDDDSYRQTIVDTFAAKAGIQSPFVFWGTIDEVLLKLALHCIPAA 476 Query: 476 HLKLWCLRILDDIRENRNGFPDLIQFWPQQGRYRMIEVKGPGDRLQDNQRRWLDYCAQHA 535 HLK + RIL DI NR+G PDLIQFWPQ+ RYRM+EVKGPGDRLQDNQ RW++YC +H Sbjct: 477 HLKKYFARILRDIPANRSGLPDLIQFWPQEQRYRMLEVKGPGDRLQDNQIRWINYCIEHQ 536 Query: 536 MPVAVCYLQWEQAAA 550 MPVAV Y+QW + AA Sbjct: 537 MPVAVTYVQWTEQAA 551 >ref|ZP_01365216.1| hypothetical protein PaerPA_01002332 [Pseudomonas aeruginosa PACS2] Length = 559 Score = 525 bits (1351), Expect = e-146, Method: Composition-based stats. Identities = 303/547 (55%), Positives = 364/547 (66%), Gaps = 8/547 (1%) Query: 2 PAVPDHRFYYLSNFQQALDWLGQRYADLLQDEERDFLQRFPALPLAARALFVRMMMRKGE 61 PA+P+ FYYL NF+ L W+G+RYADLL D+ER F+ F LP A++AL VRM+MRKG Sbjct: 14 PALPE-PFYYLHNFRAVLAWIGERYADLLDDQERAFIAAFAELPEASQALLVRMVMRKGT 72 Query: 62 HFRASRLAYPEIGCPLQASRDLPP-EWVEQDAPLSLAQVFALATKPELLRWFGVRGALKT 120 FR +LAY EIG A + L WV+ L LAQ+F L K EL + F Sbjct: 73 LFREGKLAYAEIGDTRAAVQPLLALGWVDAQPTLELAQLFGLLKKDELSQLFRDHLGRAN 132 Query: 121 ARKDSLLAALVSDPQHAAPRCLSQWTAPGQGGEAVLRMRVGSLCERLRLMFFGNLRQDWS 180 RKD+LL L P R L++W A E V +R +LC+RLRLM+FGNL QDWS Sbjct: 133 LRKDALLERL--QPLFPEARRLAEWQA--DFAEPVYELRCMALCDRLRLMYFGNLWQDWS 188 Query: 181 EFVLADLGTLRYEQIALSAEARGFRSRADIDLYLQLQACKQRFEAGDEVAAVLDALPAER 240 EFVLADLG RYE + SA++RGFR RAD+D YL L C+QRF+ G+ + +L LP E Sbjct: 189 EFVLADLGIYRYESVEFSADSRGFRLRADVDAYLHLFDCRQRFDLGEPLEELLAGLPGEP 248 Query: 241 FDNPWLESRRERLLFQLGQHCEKAGDWPQAKQIYAACRYPGARARAIRVLEKLGRFGPAQ 300 + NPWLE RR +LLFQ QHCEK D+ A+++Y +PGAR RAIR LE+ RF A Sbjct: 249 YANPWLEGRRVKLLFQFAQHCEKQRDFDLAQRLYRQSSHPGARLRAIRSLERGERFAEAH 308 Query: 301 ALLHTAQQAPENDAERQQLLRIAPRLARQLGLPCSARGRAPAVERLDLLLA--PGGLRVE 358 AL A APE+DAERQ L R+ PRL +LGLP AR AP ++RLDL LA VE Sbjct: 309 ALAREASCAPESDAERQGLARLLPRLQGKLGLPRQARAAAPEIDRLDLCLAYPSEPCSVE 368 Query: 359 LAVQAHLHEPEAPVFYVENALPNALFGLLCWEAIFAAIPGAFFHPFQREPADLLSADFAA 418 AV+ HL EP+ V YVEN L N+LFGLLCWEAIFAAIPGAFFHPF PADL SADF Sbjct: 369 WAVREHLEEPDCAVHYVENGLINSLFGLLCWEAIFAAIPGAFFHPFHSAPADLHSADFRQ 428 Query: 419 RRRDVLARCLRRFDDGSYRAHLLAIHESKHGLQSPFVAWGWVTRELLVMALDCIPAAHLK 478 RR + CL R +DGSYR + + K GLQSPFV W + ELL ALDC+PAAHL+ Sbjct: 429 RRAALFEACLGRLEDGSYRDAIRCRYRDKFGLQSPFVYWELLGEELLEQALDCLPAAHLR 488 Query: 479 LWCLRILDDIRENRNGFPDLIQFWPQQGRYRMIEVKGPGDRLQDNQRRWLDYCAQHAMPV 538 W R+L+DI NR G PDLIQFWP Q RYRM+EVKGPGDRLQDNQ RWL +C + MPV Sbjct: 489 AWFERLLEDIPGNRAGLPDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCCEREMPV 548 Query: 539 AVCYLQW 545 AVCY++W Sbjct: 549 AVCYVRW 555 >dbj|GAA17428.1| putative DNA helicase [Pseudomonas aeruginosa NCMG1179] gb|AEO75660.1| hypothetical protein PAM18_3177 [Pseudomonas aeruginosa M18] Length = 549 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 303/547 (55%), Positives = 364/547 (66%), Gaps = 8/547 (1%) Query: 2 PAVPDHRFYYLSNFQQALDWLGQRYADLLQDEERDFLQRFPALPLAARALFVRMMMRKGE 61 PA+P+ FYYL NF+ L W+G+RYADLL D+ER F+ F LP A++AL VRM+MRKG Sbjct: 4 PALPE-PFYYLHNFRAVLAWIGERYADLLDDQERAFIAAFAELPEASQALLVRMVMRKGT 62 Query: 62 HFRASRLAYPEIGCPLQASRDLPP-EWVEQDAPLSLAQVFALATKPELLRWFGVRGALKT 120 FR +LAY EIG A + L WV+ L LAQ+F L K EL + F Sbjct: 63 LFREGKLAYAEIGDTRAAVQPLLALGWVDAQPTLELAQLFGLLKKDELSQLFRDHLGRAN 122 Query: 121 ARKDSLLAALVSDPQHAAPRCLSQWTAPGQGGEAVLRMRVGSLCERLRLMFFGNLRQDWS 180 RKD+LL L P R L++W A E V +R +LC+RLRLM+FGNL QDWS Sbjct: 123 LRKDALLERL--QPLFPEARRLAEWQA--DFAEPVYELRCMALCDRLRLMYFGNLWQDWS 178 Query: 181 EFVLADLGTLRYEQIALSAEARGFRSRADIDLYLQLQACKQRFEAGDEVAAVLDALPAER 240 EFVLADLG RYE + SA++RGFR RAD+D YL L C+QRF+ G+ + +L LP E Sbjct: 179 EFVLADLGIYRYESVEFSADSRGFRLRADVDAYLHLFDCRQRFDLGEPLEELLAGLPGEP 238 Query: 241 FDNPWLESRRERLLFQLGQHCEKAGDWPQAKQIYAACRYPGARARAIRVLEKLGRFGPAQ 300 + NPWLE RR +LLFQ QHCEK D+ A+++Y +PGAR RAIR LE+ RF A Sbjct: 239 YANPWLEGRRVKLLFQFAQHCEKQRDFDLAQRLYRQSSHPGARLRAIRSLERGERFAEAH 298 Query: 301 ALLHTAQQAPENDAERQQLLRIAPRLARQLGLPCSARGRAPAVERLDLLLA--PGGLRVE 358 AL A APE+DAERQ L R+ PRL +LGLP AR AP ++RLDL LA VE Sbjct: 299 ALAREASCAPESDAERQGLARLLPRLQGKLGLPRQARAAAPEIDRLDLCLAYPSEPCSVE 358 Query: 359 LAVQAHLHEPEAPVFYVENALPNALFGLLCWEAIFAAIPGAFFHPFQREPADLLSADFAA 418 AV+ HL EP+ V YVEN L N+LFGLLCWEAIFAAIPGAFFHPF PADL SADF Sbjct: 359 WAVREHLEEPDCAVHYVENGLINSLFGLLCWEAIFAAIPGAFFHPFHSAPADLHSADFRQ 418 Query: 419 RRRDVLARCLRRFDDGSYRAHLLAIHESKHGLQSPFVAWGWVTRELLVMALDCIPAAHLK 478 RR + CL R +DGSYR + + K GLQSPFV W + ELL ALDC+PAAHL+ Sbjct: 419 RRAALFEACLGRLEDGSYRDAIRCRYRDKFGLQSPFVYWELLGEELLEQALDCLPAAHLR 478 Query: 479 LWCLRILDDIRENRNGFPDLIQFWPQQGRYRMIEVKGPGDRLQDNQRRWLDYCAQHAMPV 538 W R+L+DI NR G PDLIQFWP Q RYRM+EVKGPGDRLQDNQ RWL +C + MPV Sbjct: 479 AWFERLLEDIPGNRAGLPDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCREREMPV 538 Query: 539 AVCYLQW 545 AVCY++W Sbjct: 539 AVCYVRW 545 >ref|ZP_04933580.1| hypothetical protein PA2G_00901 [Pseudomonas aeruginosa 2192] gb|EAZ57699.1| hypothetical protein PA2G_00901 [Pseudomonas aeruginosa 2192] Length = 559 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 303/547 (55%), Positives = 364/547 (66%), Gaps = 8/547 (1%) Query: 2 PAVPDHRFYYLSNFQQALDWLGQRYADLLQDEERDFLQRFPALPLAARALFVRMMMRKGE 61 PA+P+ FYYL NF+ L W+G+RYADLL D+ER F+ F LP A++AL VRM+MRKG Sbjct: 14 PALPE-PFYYLHNFRAVLAWIGERYADLLDDQERAFIAAFAELPEASQALLVRMVMRKGT 72 Query: 62 HFRASRLAYPEIGCPLQASRDLPP-EWVEQDAPLSLAQVFALATKPELLRWFGVRGALKT 120 FR +LAY EIG A + L WV+ L LAQ+F L K EL + F Sbjct: 73 LFREGKLAYAEIGDTRAAVQPLLALGWVDAQPTLELAQLFGLLKKDELSQLFRDHLGRAN 132 Query: 121 ARKDSLLAALVSDPQHAAPRCLSQWTAPGQGGEAVLRMRVGSLCERLRLMFFGNLRQDWS 180 RKD+LL L P R L++W A E V +R +LC+RLRLM+FGNL QDWS Sbjct: 133 LRKDALLERL--QPLFPEARRLAEWQA--DFAEPVYELRCMALCDRLRLMYFGNLWQDWS 188 Query: 181 EFVLADLGTLRYEQIALSAEARGFRSRADIDLYLQLQACKQRFEAGDEVAAVLDALPAER 240 EFVLADLG RYE + SA++RGFR RAD+D YL L C+QRF+ G+ + +L LP E Sbjct: 189 EFVLADLGIYRYESVEFSADSRGFRLRADVDAYLHLFDCRQRFDLGEPLEELLAGLPGEP 248 Query: 241 FDNPWLESRRERLLFQLGQHCEKAGDWPQAKQIYAACRYPGARARAIRVLEKLGRFGPAQ 300 + NPWLE RR +LLFQ QHCEK D+ A+++Y +PGAR RAIR LE+ RF A Sbjct: 249 YANPWLEGRRVKLLFQFAQHCEKQRDFDLAQRLYRQSSHPGARLRAIRSLERGERFAEAH 308 Query: 301 ALLHTAQQAPENDAERQQLLRIAPRLARQLGLPCSARGRAPAVERLDLLLA--PGGLRVE 358 AL A APE+DAERQ L R+ PRL +LGLP AR AP ++RLDL LA VE Sbjct: 309 ALAREASCAPESDAERQGLARLLPRLQGKLGLPRQARAAAPEIDRLDLCLAYPSEPCSVE 368 Query: 359 LAVQAHLHEPEAPVFYVENALPNALFGLLCWEAIFAAIPGAFFHPFQREPADLLSADFAA 418 AV+ HL EP+ V YVEN L N+LFGLLCWEAIFAAIPGAFFHPF PADL SADF Sbjct: 369 WAVREHLEEPDCAVHYVENGLINSLFGLLCWEAIFAAIPGAFFHPFHSAPADLHSADFRQ 428 Query: 419 RRRDVLARCLRRFDDGSYRAHLLAIHESKHGLQSPFVAWGWVTRELLVMALDCIPAAHLK 478 RR + CL R +DGSYR + + K GLQSPFV W + ELL ALDC+PAAHL+ Sbjct: 429 RRAALFEACLGRLEDGSYRDAIRCRYRDKFGLQSPFVYWELLGEELLEQALDCLPAAHLR 488 Query: 479 LWCLRILDDIRENRNGFPDLIQFWPQQGRYRMIEVKGPGDRLQDNQRRWLDYCAQHAMPV 538 W R+L+DI NR G PDLIQFWP Q RYRM+EVKGPGDRLQDNQ RWL +C + MPV Sbjct: 489 AWFERLLEDIPGNRAGLPDLIQFWPAQRRYRMVEVKGPGDRLQDNQLRWLQFCREREMPV 548 Query: 539 AVCYLQW 545 AVCY++W Sbjct: 549 AVCYVRW 555