BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1030.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_03267234.1| transcriptional regulator, LysR family [Burkh... 384 e-104 ref|ZP_02881573.1| transcriptional regulator, LysR family [Burkh... 381 e-104 ref|YP_003609985.1| LysR family transcriptional regulator [Burkh... 377 e-102 ref|YP_002979098.1| transcriptional regulator, LysR family [Rhiz... 340 2e-91 ref|ZP_05087216.1| transcriptional regulator, LysR family [Pseud... 200 3e-49 >ref|ZP_03267234.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gb|EEA01165.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 296 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 190/296 (64%), Positives = 239/296 (80%), Gaps = 3/296 (1%) Query: 1 MDRFQEMTAFVAVVETGGFSAAARRLGESQSSVSKAVSALEQRLGVALLHRSTRSVTLTE 60 MDRF E+ AF AVVE GGFSAAARR GESQS++SKA+ ALE+RLGV L +RSTRSVTLT+ Sbjct: 1 MDRFHELNAFFAVVEAGGFSAAARRTGESQSAISKAIGALEKRLGVPLFNRSTRSVTLTD 60 Query: 61 HGRTYYARTVPLLEEMAQTDAELSSSTLDIAGPVRLATSATFGRLHVLPLVPVLLARYPG 120 G+ YY RT PLL+E+ D+EL+SSTLD++G VR+A ++TFGRLHVLPLVP LL+ +PG Sbjct: 61 QGQKYYERTKPLLDEIDVADSELTSSTLDVSGLVRIACASTFGRLHVLPLVPELLSLHPG 120 Query: 121 IRLDLQFSDGVRDLLADGVDLAIRVSPVLHPDAVVKRVASTPLVCVGARSYFRRHGLPRT 180 +R+DL SD VRD++ D +DLAIRV PV +PD+VVKR+ASTPLVCVG+R YF RHG P+ Sbjct: 121 LRVDLVLSDYVRDMVEDRIDLAIRVGPVNNPDSVVKRIASTPLVCVGSRRYFERHGTPKE 180 Query: 181 PQELARHNCLIYNDMHE---WPFSGPHGRFNVPVQGNLSANTVEAILAAVRAGVGLGLFN 237 P ELA HNCL+Y + E WPF GP GRF+VPV+GNLS+N+VE I +AV AGVG+GLF Sbjct: 181 PSELANHNCLLYGGLLESANWPFHGPRGRFSVPVRGNLSSNSVETIRSAVLAGVGIGLFA 240 Query: 238 RASLVGEMRHPDIATVLDAYLKETRDISLVWPRRRFLPQRVRVVTDFFAKELAARI 293 + SL E+ HPDI TVLD ++++ RD+S++WPRRRF+P RVR VT+FFA L R+ Sbjct: 241 KLSLADELEHPDIVTVLDDFIQDARDVSIIWPRRRFVPARVRRVTEFFAAALPQRL 296 >ref|ZP_02881573.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] gb|EDT13002.1| transcriptional regulator, LysR family [Burkholderia graminis C4D1M] Length = 293 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 186/293 (63%), Positives = 241/293 (82%) Query: 1 MDRFQEMTAFVAVVETGGFSAAARRLGESQSSVSKAVSALEQRLGVALLHRSTRSVTLTE 60 MDRF E+ AF AVVE GFSAAARR+GESQS++SKAV+ALE+RLGVALL RSTR VTLT+ Sbjct: 1 MDRFDELNAFFAVVEASGFSAAARRIGESQSAISKAVNALEKRLGVALLRRSTRKVTLTD 60 Query: 61 HGRTYYARTVPLLEEMAQTDAELSSSTLDIAGPVRLATSATFGRLHVLPLVPVLLARYPG 120 GR YY R PL++E+ D+EL+S+TL+++G +R+A +TFGRLHVLPL+P LLAR+PG Sbjct: 61 QGRLYYDRMRPLVDEIQVADSELTSTTLEVSGLIRIAAPSTFGRLHVLPLIPGLLARHPG 120 Query: 121 IRLDLQFSDGVRDLLADGVDLAIRVSPVLHPDAVVKRVASTPLVCVGARSYFRRHGLPRT 180 +R+D+ SD VRD++ D +DLAIRVSPV PD+VV+RVA+T LVC G+R YF +HG+PRT Sbjct: 121 LRIDMVLSDAVRDMVEDRIDLAIRVSPVEEPDSVVRRVAATSLVCAGSRRYFEQHGVPRT 180 Query: 181 PQELARHNCLIYNDMHEWPFSGPHGRFNVPVQGNLSANTVEAILAAVRAGVGLGLFNRAS 240 P +LA HNCL+Y +M +WPF+GP G FN+PV+GNLS+N+VE ILA V AGVG+G+F+RAS Sbjct: 181 PADLADHNCLVYREMTDWPFAGPQGPFNLPVRGNLSSNSVETILAGVLAGVGIGMFHRAS 240 Query: 241 LVGEMRHPDIATVLDAYLKETRDISLVWPRRRFLPQRVRVVTDFFAKELAARI 293 LVGE + DI TVLD ++++ R++SL+WP+RRF+P RVR TDF A LA RI Sbjct: 241 LVGEFQQSDIVTVLDDFVQQPREVSLIWPKRRFVPTRVRSATDFLAGALAERI 293 >ref|YP_003609985.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG20474.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 296 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 185/296 (62%), Positives = 240/296 (81%), Gaps = 3/296 (1%) Query: 1 MDRFQEMTAFVAVVETGGFSAAARRLGESQSSVSKAVSALEQRLGVALLHRSTRSVTLTE 60 MDRF E+ AF AVVE GGFSAAARR GESQS++SK++ ALE+RLGV L +RSTR VTLT+ Sbjct: 1 MDRFHELNAFFAVVEAGGFSAAARRTGESQSAISKSIGALEKRLGVLLFNRSTRRVTLTD 60 Query: 61 HGRTYYARTVPLLEEMAQTDAELSSSTLDIAGPVRLATSATFGRLHVLPLVPVLLARYPG 120 G+ YY RT PLL+E+ D+EL+SSTLD++G VR+A+++TFGRLHVLPL+P LL+R+PG Sbjct: 61 QGQRYYERTKPLLDEIEVADSELTSSTLDVSGLVRIASASTFGRLHVLPLIPELLSRHPG 120 Query: 121 IRLDLQFSDGVRDLLADGVDLAIRVSPVLHPDAVVKRVASTPLVCVGARSYFRRHGLPRT 180 +R+DL SD VRD++ D +DLAIRV + PD+VVKR+ASTPLVCVG+R YF ++G+P+ Sbjct: 121 LRVDLVLSDFVRDMVEDRIDLAIRVGSINDPDSVVKRIASTPLVCVGSRRYFEQYGVPKE 180 Query: 181 PQELARHNCLIYNDMHE---WPFSGPHGRFNVPVQGNLSANTVEAILAAVRAGVGLGLFN 237 P ELA HNCL+Y + E WPF GP GRF+VPV+GNLS+N+VE I +AV AGVG+GLF Sbjct: 181 PAELANHNCLLYGGLLESANWPFHGPRGRFSVPVRGNLSSNSVETIRSAVLAGVGIGLFA 240 Query: 238 RASLVGEMRHPDIATVLDAYLKETRDISLVWPRRRFLPQRVRVVTDFFAKELAARI 293 + SL E++HPDI TVLD ++++ RD+S++WPRRRF+P RVR VTDFFA L R+ Sbjct: 241 KLSLADELKHPDIVTVLDDFIRDARDVSVIWPRRRFVPARVRRVTDFFAAALPQRL 296 >ref|YP_002979098.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS60547.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 296 Score = 340 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 167/296 (56%), Positives = 217/296 (73%), Gaps = 3/296 (1%) Query: 1 MDRFQEMTAFVAVVETGGFSAAARRLGESQSSVSKAVSALEQRLGVALLHRSTRSVTLTE 60 MDR E+ AF+AVVETGGF+AAARR G SQ +VSKA+ ALE RLGVAL +RSTR+VTLT+ Sbjct: 1 MDRLSELKAFLAVVETGGFTAAARRTGTSQPAVSKAIGALENRLGVALFNRSTRNVTLTD 60 Query: 61 HGRTYYARTVPLLEEMAQTDAELSSSTLDIAGPVRLATSATFGRLHVLPLVPVLLARYPG 120 G+ Y+ R PLLEE+ + E+ S +D++G +R+A T GRLH+LP++P LL+R+P Sbjct: 61 QGQRYFDRMKPLLEEIDNANREVIGSAVDMSGSIRIAVPTTLGRLHILPIIPDLLSRFPK 120 Query: 121 IRLDLQFSDGVRDLLADGVDLAIRVSPVLHPDAVVKRVASTPLVCVGARSYFRRHGLPRT 180 + +DL SD +RD++ D VDL IRV V PDAVV+RVA TPLVCVG+R YF +HG+P Sbjct: 121 LEVDLVLSDLMRDMVEDRVDLVIRVGSVEEPDAVVRRVAKTPLVCVGSRQYFEKHGIPTK 180 Query: 181 PQELARHNCLIYNDMHE---WPFSGPHGRFNVPVQGNLSANTVEAILAAVRAGVGLGLFN 237 P +LA HNCL+Y E WPF G G F+V V+GNL++N++E I A V AGVG+G+F Sbjct: 181 PADLADHNCLVYGGFKESANWPFVGQEGHFSVAVRGNLTSNSIETIRAGVLAGVGIGMFT 240 Query: 238 RASLVGEMRHPDIATVLDAYLKETRDISLVWPRRRFLPQRVRVVTDFFAKELAARI 293 +ASLV E+ HPD+ T+L Y++ TRDIS VWP+RR + RVR VTDF A L RI Sbjct: 241 KASLVEELSHPDVVTILGEYVQGTRDISFVWPKRRLVSARVRHVTDFLAASLEGRI 296 >ref|ZP_05087216.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] gb|EEA92412.1| transcriptional regulator, LysR family [Pseudovibrio sp. JE062] Length = 306 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 107/294 (36%), Positives = 159/294 (54%), Gaps = 3/294 (1%) Query: 1 MDRFQEMTAFVAVVETGGFSAAARRLGESQSSVSKAVSALEQRLGVALLHRSTRSVTLTE 60 MD+ + FV VVE GF+AAAR LG S+S+VSK ++ LE+ LG LL+RSTR+++LTE Sbjct: 1 MDQISALPVFVMVVEHQGFAAAARELGVSKSAVSKRITLLEEHLGARLLNRSTRNISLTE 60 Query: 61 HGRTYYARTVPLLEEMAQTDAELSSSTLDIAGPVRLATSATFGRLHVLPLVPVLLARYPG 120 G YYAR V LE + ++ ++ G +++ TFGRLH+ PL+P L P Sbjct: 61 AGELYYARAVDALEAAKEAESAVAQMQGKPKGRLKINVPMTFGRLHIAPLIPKFLKLNPE 120 Query: 121 IRLDLQFSDGVRDLLADGVDLAIRVSPVLHPDAVVKRVASTPLVCVGARSYFRRHGLPRT 180 I +D+ D DL+ G DLAIR + + +++ V + Y HG P T Sbjct: 121 ISIDMIMDDRTIDLVDGGFDLAIRGGRLKDSSLIARKITPCFNVLAASPQYLEEHGTPAT 180 Query: 181 PQELARHNCLIY---NDMHEWPFSGPHGRFNVPVQGNLSANTVEAILAAVRAGVGLGLFN 237 PQ+L HNCL Y +D HEW P G+ V GN N +A+ AV G G+G Sbjct: 181 PQDLQNHNCLHYAYFSDQHEWTLEDPQGQVRVETSGNYQVNNGDALTTAVLGGCGIGRLT 240 Query: 238 RASLVGEMRHPDIATVLDAYLKETRDISLVWPRRRFLPQRVRVVTDFFAKELAA 291 + +R + VL Y T+ + V+P R++LP + RV +F ++++ + Sbjct: 241 TFAAGEYLRSGALTQVLPNYTLPTQTMYAVYPNRKYLPTKTRVFINFISEQIGS 294