BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1027.p         (140 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774694.1| transporter family protein [Herbaspirillum s...   178   2e-43
ref|ZP_07250583.1| hypothetical protein PsyrptK_03562 [Pseudomon...   140   5e-32
ref|XP_002536672.1| conserved hypothetical protein [Ricinus comm...   139   1e-31
ref|ZP_03399923.1| hypothetical protein PSPTOT1_3183 [Pseudomona...   132   2e-29
ref|ZP_08018205.1| membrane protein [Lautropia mirabilis ATCC 51...   131   4e-29

>ref|YP_003774694.1| transporter family protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62786.1| bacterial/archaeal transporter family protein [Herbaspirillum
           seropedicae SmR1]
          Length = 140

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 118/140 (84%), Positives = 128/140 (91%)

Query: 1   MERWIAYAFISMAFAGFTSVIAKLGLTGISSDLGLAIRTCFVFVFVLMFAAAVVPAAQLS 60
           MERWI YAF+SMAFAGFTSVIAKLGLTGIS+DLGLAIRTCFVFVFVL+FAAAVVP +QL 
Sbjct: 1   MERWILYAFVSMAFAGFTSVIAKLGLTGISADLGLAIRTCFVFVFVLLFAAAVVPTSQLD 60

Query: 61  SVTWQNVLWLGLSGVTTAVSWVFYYKAIKAGDVSTVALIDKGSVIVALLMAVWILNEVIT 120
            +TW+N  WLGLSGVTTA SWVFYYKAIK GDVSTVALIDKGSV+VA+L+A WILNE IT
Sbjct: 61  MLTWKNFFWLGLSGVTTAASWVFYYKAIKLGDVSTVALIDKGSVVVAVLLACWILNEAIT 120

Query: 121 PAKLIGAALIAAGLLVISRG 140
           PAKL GAALIA GLLVI+RG
Sbjct: 121 PAKLAGAALIAGGLLVIARG 140


>ref|ZP_07250583.1| hypothetical protein PsyrptK_03562 [Pseudomonas syringae pv. tomato
           K40]
          Length = 141

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 93/139 (66%), Positives = 116/139 (83%)

Query: 1   MERWIAYAFISMAFAGFTSVIAKLGLTGISSDLGLAIRTCFVFVFVLMFAAAVVPAAQLS 60
           ME+W+AYAFISM FAGFTSVIAK+GL GIS +LGL IRT FV  FVL+FAA  VP  +++
Sbjct: 1   MEKWMAYAFISMFFAGFTSVIAKMGLAGISGELGLTIRTLFVCAFVLLFAAWAVPTQEVA 60

Query: 61  SVTWQNVLWLGLSGVTTAVSWVFYYKAIKAGDVSTVALIDKGSVIVALLMAVWILNEVIT 120
           ++T +N+ WLGLSGVTTA+SW+FYYKA+K GDV+TVALIDKGSV+VA+L+A  +L EVIT
Sbjct: 61  NITSRNLSWLGLSGVTTALSWIFYYKALKVGDVATVALIDKGSVVVAMLLAGLVLREVIT 120

Query: 121 PAKLIGAALIAAGLLVISR 139
              + GA LI AGLLVI++
Sbjct: 121 LRMIAGAGLIVAGLLVIAK 139


>ref|XP_002536672.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF25711.1| conserved hypothetical protein [Ricinus communis]
          Length = 425

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/135 (51%), Positives = 97/135 (71%)

Query: 1   MERWIAYAFISMAFAGFTSVIAKLGLTGISSDLGLAIRTCFVFVFVLMFAAAVVPAAQLS 60
           M+ W+ YAF +M FAG T+VIAK GL GIS ++G+ +R+ +V +FV  FA   VPAA+  
Sbjct: 1   MKPWLTYAFTAMLFAGVTTVIAKHGLNGISGEMGVVLRSMYVALFVGAFAVLFVPAAEWQ 60

Query: 61  SVTWQNVLWLGLSGVTTAVSWVFYYKAIKAGDVSTVALIDKGSVIVALLMAVWILNEVIT 120
           ++  +N+ WL +S  TTAVSW+++YKA+K GD++TV LIDKGS ++A+L+A  I  E IT
Sbjct: 61  TLQRENLFWLAISSFTTAVSWIYFYKALKEGDIATVTLIDKGSTVIAILLAWLIFKEAIT 120

Query: 121 PAKLIGAALIAAGLL 135
               +GA LI AGLL
Sbjct: 121 WRIALGAGLIIAGLL 135


>ref|ZP_03399923.1| hypothetical protein PSPTOT1_3183 [Pseudomonas syringae pv. tomato
           T1]
 ref|ZP_07230933.1| hypothetical protein PsyrptM_07777 [Pseudomonas syringae pv. tomato
           Max13]
 gb|EEB57027.1| hypothetical protein PSPTOT1_3183 [Pseudomonas syringae pv. tomato
           T1]
          Length = 137

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 90/135 (66%), Positives = 112/135 (82%)

Query: 5   IAYAFISMAFAGFTSVIAKLGLTGISSDLGLAIRTCFVFVFVLMFAAAVVPAAQLSSVTW 64
           +AYAFISM FAGFTSVIAK+GL GIS +LGL IRT FV  FVL+FAA  VP  +++++T 
Sbjct: 1   MAYAFISMFFAGFTSVIAKMGLAGISGELGLTIRTLFVCAFVLLFAAWAVPTQEVANITS 60

Query: 65  QNVLWLGLSGVTTAVSWVFYYKAIKAGDVSTVALIDKGSVIVALLMAVWILNEVITPAKL 124
           +N+ WLGLSGVTTA+SW+FYYKA+K GDV+TVALIDKGSV+VA+L+A  +L EVIT   +
Sbjct: 61  RNLSWLGLSGVTTALSWIFYYKALKVGDVATVALIDKGSVVVAMLLAGLVLREVITLRMI 120

Query: 125 IGAALIAAGLLVISR 139
            GA LI AGLLVI++
Sbjct: 121 AGAGLIVAGLLVIAK 135


>ref|ZP_08018205.1| membrane protein [Lautropia mirabilis ATCC 51599]
 gb|EFV95093.1| membrane protein [Lautropia mirabilis ATCC 51599]
          Length = 140

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 82/139 (58%), Positives = 108/139 (77%)

Query: 1   MERWIAYAFISMAFAGFTSVIAKLGLTGISSDLGLAIRTCFVFVFVLMFAAAVVPAAQLS 60
           MERW+ YA +SM FAGFTSVIAK+G+ GIS++LGL++RT FV  FV +FA   V  A+L 
Sbjct: 1   MERWVLYATLSMLFAGFTSVIAKMGMEGISAELGLSVRTLFVCGFVFVFALMFVDPAELP 60

Query: 61  SVTWQNVLWLGLSGVTTAVSWVFYYKAIKAGDVSTVALIDKGSVIVALLMAVWILNEVIT 120
            +  ++++WL +SG TTA+SW+FYYKAIK G V+TVALIDKGSV+VA+++A  +L E IT
Sbjct: 61  RLNGRSLMWLCISGATTALSWIFYYKAIKEGQVATVALIDKGSVVVAMILAWILLREAIT 120

Query: 121 PAKLIGAALIAAGLLVISR 139
           P   IGA LI +GLLV+ R
Sbjct: 121 PRMAIGATLIVSGLLVMVR 139