BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1019.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002909842.1| AraC family transcriptional regulator [Burkh... 444 e-123 ref|YP_004234382.1| AraC protein arabinose-binding/dimerization ... 443 e-122 ref|XP_002534933.1| conserved hypothetical protein [Ricinus comm... 423 e-116 ref|YP_003519881.1| YeaM [Pantoea ananatis LMG 20103] >gi|291152... 403 e-110 dbj|BAK11003.1| putative HTH-type transcriptional regulator YeaM... 401 e-110 >ref|YP_002909842.1| AraC family transcriptional regulator [Burkholderia glumae BGR1] gb|ACR32606.1| AraC family transcriptional regulator [Burkholderia glumae BGR1] Length = 283 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 222/281 (79%), Positives = 248/281 (88%), Gaps = 1/281 (0%) Query: 1 MSRIAITGQILAPRDVDSVSRPVVALGTTSVAKDWENARHQHRKAQLIYSVRGVLNCEVE 60 MS IAIT I++ +DVD+V RPVVAL +V KDWE+A+H+HR+AQL+YSVRG+LNCE+E Sbjct: 1 MSSIAITDLIVS-KDVDNVPRPVVALSAMTVTKDWEHAKHRHRRAQLLYSVRGILNCEIE 59 Query: 61 DGVWIVPPQCAVWIPGDLPHAARGAGETECYCLFVEPDAAPDLPTTCCTISVSPLLRELL 120 DGVWIVPPQCAVWIPGDLPHAARG+GETEC+CLFVEPDAAPDLP +CCTISVSPLLRELL Sbjct: 60 DGVWIVPPQCAVWIPGDLPHAARGSGETECHCLFVEPDAAPDLPKSCCTISVSPLLRELL 119 Query: 121 LKVAGFPELYPLGGREERLIATLLDELASAPVEDLHLPMPRDQRLRRLADLLLADPTDKT 180 LKVA FPELYPLG RE+RLIA LLDELA APVEDLHLPMPRD RLRRLA++LL DPTDKT Sbjct: 120 LKVACFPELYPLGSREDRLIAVLLDELAMAPVEDLHLPMPRDPRLRRLAEMLLTDPTDKT 179 Query: 181 SKAAWAHHIGMSERSMSRLLQQQVGMSFGRWRRQLHVILALQRLTKGDSVQTVALELGYE 240 SK WA IGMSERSMSRLL ++GMSFGRW RQLHVILALQRLTKG+SVQTVALELGYE Sbjct: 180 SKGDWATRIGMSERSMSRLLMHEIGMSFGRWCRQLHVILALQRLTKGESVQTVALELGYE 239 Query: 241 NASGFITMFRKAAGKSPARYLSDRTDSAVRATVPAIVLPDE 281 NASGF+TMFRKA GK PARYL+DR +A A + IVL D+ Sbjct: 240 NASGFVTMFRKAVGKPPARYLADRMVNARSAAIGGIVLADQ 280 >ref|YP_004234382.1| AraC protein arabinose-binding/dimerization [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45815.1| AraC protein arabinose-binding/dimerization [Acidovorax avenae subsp. avenae ATCC 19860] Length = 283 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 225/281 (80%), Positives = 247/281 (87%), Gaps = 1/281 (0%) Query: 1 MSRIAITGQILAPRDVDSVSRPVVALGTTSVAKDWENARHQHRKAQLIYSVRGVLNCEVE 60 MS +AIT + APRDVD+V RPVVAL TSVA+DWENARHQH KAQLIYSVRG+L+CE+E Sbjct: 1 MSSVAIT-DVTAPRDVDNVPRPVVALSATSVARDWENARHQHHKAQLIYSVRGILHCEIE 59 Query: 61 DGVWIVPPQCAVWIPGDLPHAARGAGETECYCLFVEPDAAPDLPTTCCTISVSPLLRELL 120 DGVWIVPPQCA+WIPGDLPH+ARG+GETE +CLFVEPDAAPDLP +CCTI+VSPLLRELL Sbjct: 60 DGVWIVPPQCAIWIPGDLPHSARGSGETEIHCLFVEPDAAPDLPKSCCTIAVSPLLRELL 119 Query: 121 LKVAGFPELYPLGGREERLIATLLDELASAPVEDLHLPMPRDQRLRRLADLLLADPTDKT 180 LKVAGFP LY LGGRE+RLIA LLDEL APVEDLHLPMPRD RLRRLA++LL+DPTDKT Sbjct: 120 LKVAGFPGLYALGGREDRLIAALLDELVEAPVEDLHLPMPRDPRLRRLAEMLLSDPTDKT 179 Query: 181 SKAAWAHHIGMSERSMSRLLQQQVGMSFGRWRRQLHVILALQRLTKGDSVQTVALELGYE 240 SKA WA IGMSERSMSRLL ++GM FGRWRRQLHVILALQRLT+G+SVQTVA ELGYE Sbjct: 180 SKADWATRIGMSERSMSRLLLHELGMGFGRWRRQLHVILALQRLTRGESVQTVAWELGYE 239 Query: 241 NASGFITMFRKAAGKSPARYLSDRTDSAVRATVPAIVLPDE 281 NASGF+TMFRKA GK PARYLSDRT A A AI L DE Sbjct: 240 NASGFVTMFRKAVGKPPARYLSDRTHGAEPAPTAAIRLADE 280 >ref|XP_002534933.1| conserved hypothetical protein [Ricinus communis] gb|EEF27450.1| conserved hypothetical protein [Ricinus communis] Length = 279 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 224/280 (80%), Positives = 245/280 (87%), Gaps = 1/280 (0%) Query: 1 MSRIAITGQILAPRDVDSVSRPVVALGTTSVAKDWENARHQHRKAQLIYSVRGVLNCEVE 60 MS IAIT +A +DVD+ RPVVAL SV K WE+ARH+HR+AQL+YSVRG+LNCE+E Sbjct: 1 MSSIAITDLTVA-KDVDNAPRPVVALSAMSVTKGWEHARHRHRRAQLLYSVRGILNCEIE 59 Query: 61 DGVWIVPPQCAVWIPGDLPHAARGAGETECYCLFVEPDAAPDLPTTCCTISVSPLLRELL 120 +GVWIVPPQCAVWIPGDLPH+ARG+GETEC+CLFVEPDAA DLP TCCTISVSPLLRELL Sbjct: 60 NGVWIVPPQCAVWIPGDLPHSARGSGETECHCLFVEPDAASDLPKTCCTISVSPLLRELL 119 Query: 121 LKVAGFPELYPLGGREERLIATLLDELASAPVEDLHLPMPRDQRLRRLADLLLADPTDKT 180 LKVAGFP LYP GGRE+RLIA LLDELA+APVEDLHLPMPRD RLRRLA++LLADP DK Sbjct: 120 LKVAGFPALYPSGGREDRLIAALLDELAAAPVEDLHLPMPRDPRLRRLAEMLLADPIDKA 179 Query: 181 SKAAWAHHIGMSERSMSRLLQQQVGMSFGRWRRQLHVILALQRLTKGDSVQTVALELGYE 240 SK WA IGMSERSMSRLL ++GMSFGRWRRQLHVILALQRLT G+SVQTVALELGYE Sbjct: 180 SKGDWATRIGMSERSMSRLLLHEIGMSFGRWRRQLHVILALQRLTSGESVQTVALELGYE 239 Query: 241 NASGFITMFRKAAGKSPARYLSDRTDSAVRATVPAIVLPD 280 NASGFITMFRKA GK PARYLSDRT +A A V IVLPD Sbjct: 240 NASGFITMFRKAVGKPPARYLSDRTTNAQSAAVRGIVLPD 279 >ref|YP_003519881.1| YeaM [Pantoea ananatis LMG 20103] gb|ADD76753.1| YeaM [Pantoea ananatis LMG 20103] Length = 294 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 190/268 (70%), Positives = 229/268 (85%), Gaps = 1/268 (0%) Query: 1 MSRIAITGQILAPRDVDSVSRPVVALGTTSVAKDWENARHQHRKAQLIYSVRGVLNCEVE 60 MSR++ + P D+DS+ RP+ AL + ++ WE+ HQHRK+QL+YSVRGVLNCEV+ Sbjct: 13 MSRLSSLNAVALP-DIDSIPRPIFALSASMISNGWEHETHQHRKSQLLYSVRGVLNCEVD 71 Query: 61 DGVWIVPPQCAVWIPGDLPHAARGAGETECYCLFVEPDAAPDLPTTCCTISVSPLLRELL 120 +G+WIVPPQCAVWIPG++PH+ARG+G TECYCLF+EP+A P LP TCCT+SV+PLLRELL Sbjct: 72 EGMWIVPPQCAVWIPGNMPHSARGSGNTECYCLFIEPEAIPALPKTCCTLSVNPLLRELL 131 Query: 121 LKVAGFPELYPLGGREERLIATLLDELASAPVEDLHLPMPRDQRLRRLADLLLADPTDKT 180 LK AG P LYP G E RLIATLLDEL++APVEDLHLPMPRD+RLR+LA+ LLA+P DK+ Sbjct: 132 LKAAGLPRLYPTEGPESRLIATLLDELSAAPVEDLHLPMPRDRRLRQLAEKLLAEPADKS 191 Query: 181 SKAAWAHHIGMSERSMSRLLQQQVGMSFGRWRRQLHVILALQRLTKGDSVQTVALELGYE 240 S WAH IGMSER+MSRL+ Q++GMSFG WRRQLHVIL+LQRLT+G+SVQTVALELGYE Sbjct: 192 SLGEWAHRIGMSERTMSRLMLQEIGMSFGHWRRQLHVILSLQRLTRGESVQTVALELGYE 251 Query: 241 NASGFITMFRKAAGKSPARYLSDRTDSA 268 NASGFITMFRKA GK PARYL +RT+ A Sbjct: 252 NASGFITMFRKAVGKPPARYLFERTEKA 279 >dbj|BAK11003.1| putative HTH-type transcriptional regulator YeaM [Pantoea ananatis AJ13355] Length = 282 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 190/268 (70%), Positives = 229/268 (85%), Gaps = 1/268 (0%) Query: 1 MSRIAITGQILAPRDVDSVSRPVVALGTTSVAKDWENARHQHRKAQLIYSVRGVLNCEVE 60 MSR++ + P D+DS+ RP+ AL + ++ WE+ HQHRK+QL+YSVRGVLNCEV+ Sbjct: 1 MSRLSSLNAVALP-DIDSIPRPIFALSASMISNGWEHETHQHRKSQLLYSVRGVLNCEVD 59 Query: 61 DGVWIVPPQCAVWIPGDLPHAARGAGETECYCLFVEPDAAPDLPTTCCTISVSPLLRELL 120 +G+WIVPPQCAVWIPG++PH+ARG+G TECYCLF+EP+A P LP TCCT+SV+PLLRELL Sbjct: 60 EGMWIVPPQCAVWIPGNMPHSARGSGNTECYCLFIEPEAIPALPKTCCTLSVNPLLRELL 119 Query: 121 LKVAGFPELYPLGGREERLIATLLDELASAPVEDLHLPMPRDQRLRRLADLLLADPTDKT 180 LK AG P LYP G E RLIATLLDEL++APVEDLHLPMPRD+RLR+LA+ LLA+P DK+ Sbjct: 120 LKAAGLPRLYPTEGPESRLIATLLDELSAAPVEDLHLPMPRDRRLRQLAEKLLAEPADKS 179 Query: 181 SKAAWAHHIGMSERSMSRLLQQQVGMSFGRWRRQLHVILALQRLTKGDSVQTVALELGYE 240 S WAH IGMSER+MSRL+ Q++GMSFG WRRQLHVIL+LQRLT+G+SVQTVALELGYE Sbjct: 180 SLGEWAHRIGMSERTMSRLMLQEIGMSFGHWRRQLHVILSLQRLTRGESVQTVALELGYE 239 Query: 241 NASGFITMFRKAAGKSPARYLSDRTDSA 268 NASGFITMFRKA GK PARYL +RT+ A Sbjct: 240 NASGFITMFRKAVGKPPARYLFERTEKA 267