BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1015.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_623295.1| short-chain dehydrogenase/reductase SDR [Burkho... 428 e-118 ref|YP_002908431.1| Short-chain dehydrogenase/reductase SDR [Bur... 407 e-111 ref|YP_004006118.1| short chain dehydrogenase [Rhodococcus equi ... 275 1e-71 ref|YP_003383614.1| short-chain dehydrogenase/reductase SDR [Kri... 268 5e-70 ref|YP_004331660.1| short-chain dehydrogenase/reductase SDR [Pse... 258 1e-66 >ref|YP_623295.1| short-chain dehydrogenase/reductase SDR [Burkholderia cenocepacia AU 1054] ref|YP_838568.1| short-chain dehydrogenase/reductase SDR [Burkholderia cenocepacia HI2424] ref|YP_001778964.1| short-chain dehydrogenase/reductase SDR [Burkholderia cenocepacia MC0-3] gb|ABF78322.1| short-chain dehydrogenase/reductase SDR [Burkholderia cenocepacia AU 1054] gb|ABK11675.1| short-chain dehydrogenase/reductase SDR [Burkholderia cenocepacia HI2424] gb|ACA94474.1| short-chain dehydrogenase/reductase SDR [Burkholderia cenocepacia MC0-3] Length = 301 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 237/301 (78%), Positives = 265/301 (88%) Query: 6 MYQLPDQRQRQIIVTGANSGTGKEATRRLAAAGADVVMAVRSEAKGEAARQEILKEFPKA 65 MY+ DQR R+I++TGANSGTGKEATRRL AAGADV+MAVRSE+KG+AAR++I KEFP Sbjct: 1 MYKPLDQRGRRIVITGANSGTGKEATRRLVAAGADVIMAVRSESKGDAARRDIRKEFPGT 60 Query: 66 SLAVRILDLSSLASVRTFADQMLSEGRPIDLLLNNAGIMMPPKRALSPDGFELQFATNFL 125 S+ VR LDLSSLASVR F Q+L EGRP+D+L+NNAGIMMPP R LS DGFELQ ATNFL Sbjct: 61 SIEVRTLDLSSLASVRNFGRQLLEEGRPLDVLVNNAGIMMPPTRVLSSDGFELQLATNFL 120 Query: 126 GHFALTNLLLPLLLEAKAPRVTTITSSAAIGAKINFDDLQSERSYSPVTAYAQSKLACLL 185 GHFALTNLLLPLLLEAK+PRV T+TSSAA+GA INFDDLQ ERSY P+TAYAQSKLACLL Sbjct: 121 GHFALTNLLLPLLLEAKSPRVATMTSSAAMGATINFDDLQGERSYKPMTAYAQSKLACLL 180 Query: 186 LANQLAAIARERDWPLLSTSAHPGHTRTNLQTSGPNMGTDSTHKRLMFRLVPSMDVKWAT 245 LAN+LA IARER WPLLSTSAHPGHTRTNLQTSGPNMGTDST KRL FRLVPSMDV+WAT Sbjct: 181 LANRLAEIARERGWPLLSTSAHPGHTRTNLQTSGPNMGTDSTRKRLSFRLVPSMDVEWAT 240 Query: 246 ESLLQAALDPNAAQGAFYGPRFLLIGSPHVARQPQSARQADSARLWQTAETLTGTAPPPK 305 +SLL+AA+DP A QGAFYGPRFLL+G+ HVA+QP+SA+ ADS RLWQ AE LT T PP Sbjct: 241 DSLLRAAVDPTATQGAFYGPRFLLVGNSHVAKQPRSAKSADSIRLWQVAEALTATRPPQV 300 Query: 306 G 306 G Sbjct: 301 G 301 >ref|YP_002908431.1| Short-chain dehydrogenase/reductase SDR [Burkholderia glumae BGR1] gb|ACR31196.1| Short-chain dehydrogenase/reductase SDR [Burkholderia glumae BGR1] Length = 300 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 231/299 (77%), Positives = 268/299 (89%) Query: 6 MYQLPDQRQRQIIVTGANSGTGKEATRRLAAAGADVVMAVRSEAKGEAARQEILKEFPKA 65 MY++ DQR R++++TGANSGTG+EA RRLAAAGAD+VMAVRSE+KG+AAR+++ ++FP A Sbjct: 1 MYEVLDQRGRRVVITGANSGTGREAARRLAAAGADLVMAVRSESKGDAARRDLQEQFPGA 60 Query: 66 SLAVRILDLSSLASVRTFADQMLSEGRPIDLLLNNAGIMMPPKRALSPDGFELQFATNFL 125 S+ VR++DLSSLASVR FA Q+L EGRP+DLL+NNAG+MMPP+R LS DGFELQFATNFL Sbjct: 61 SIEVRMMDLSSLASVREFATQLLEEGRPLDLLVNNAGVMMPPRRVLSSDGFELQFATNFL 120 Query: 126 GHFALTNLLLPLLLEAKAPRVTTITSSAAIGAKINFDDLQSERSYSPVTAYAQSKLACLL 185 GHFALTNLLLPLLLEAK+PRVTT+TSSAAIGAKINFDDLQ ERSY P+ AYAQSKLACLL Sbjct: 121 GHFALTNLLLPLLLEAKSPRVTTMTSSAAIGAKINFDDLQGERSYKPMAAYAQSKLACLL 180 Query: 186 LANQLAAIARERDWPLLSTSAHPGHTRTNLQTSGPNMGTDSTHKRLMFRLVPSMDVKWAT 245 LAN+LA IA ER WPLLSTSAHPGH RTNLQTSGPN+GTDST KRL+F+LVPSM V+WAT Sbjct: 181 LANRLAEIAHERRWPLLSTSAHPGHARTNLQTSGPNLGTDSTRKRLLFKLVPSMSVEWAT 240 Query: 246 ESLLQAALDPNAAQGAFYGPRFLLIGSPHVARQPQSARQADSARLWQTAETLTGTAPPP 304 +SLLQAAL+P A QGAFYGPRFLLIG+ H+ QP SA++ADS RLW AETLT T PPP Sbjct: 241 DSLLQAALEPTATQGAFYGPRFLLIGNSHIIEQPHSAKRADSIRLWHVAETLTQTRPPP 299 >ref|YP_004006118.1| short chain dehydrogenase [Rhodococcus equi 103S] ref|ZP_08156198.1| short-chain dehydrogenase/reductase family oxidoreductase [Rhodococcus equi ATCC 33707] emb|CBH47433.1| putative short chain dehydrogenase [Rhodococcus equi 103S] gb|EGD22382.1| short-chain dehydrogenase/reductase family oxidoreductase [Rhodococcus equi ATCC 33707] Length = 306 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 172/306 (56%), Positives = 212/306 (69%), Gaps = 9/306 (2%) Query: 6 MYQLPDQRQRQIIVTGANSGTGKEATRRLAAAGADVVMAVRSEAKGEAARQEILKEFPKA 65 MYQ+PD R ++VTGANSG GKEATRRLAAAGA VVMAVR+ A+GE+A EI+ E P A Sbjct: 1 MYQVPDITGRYVVVTGANSGIGKEATRRLAAAGAHVVMAVRTPARGESACAEIMHENPDA 60 Query: 66 SLAVRILDLSSLASVRTFADQMLSEGRPIDLLLNNAGIMMPPKRALSPDGFELQFATNFL 125 L +R +DL+ L SVR FA +L +GRP+DLL+NNAG+M PP+R + DGFELQF +NFL Sbjct: 61 QLEIRRIDLADLGSVREFAAGLLDDGRPLDLLINNAGVMSPPRRFETVDGFELQFGSNFL 120 Query: 126 GHFALTNLLLPLLLEAKAPRVTTITSSAAIGAKINFDDLQSERSYSPVTAYAQSKLACLL 185 G FALTNLLLPLLL+A PRV T+TS A +INF DLQS YSP +YAQSKLA +L Sbjct: 121 GPFALTNLLLPLLLDAAMPRVATMTSGTAHYGRINFRDLQSRHRYSPALSYAQSKLADML 180 Query: 186 LANQLAAIARERDWPLLSTSAHPGHTRTNLQTSGPNMGTDSTHKRLMFR-----LVPSMD 240 +A QLA +A E W LLST AHPG+TRTNLQT+G ++G + + MF ++PS D Sbjct: 181 MAQQLARVADELGWHLLSTYAHPGYTRTNLQTAGASLGRERP-RHGMFSGNDRTMLPSQD 239 Query: 241 VKWATESLLQAALDPNAAQGAFYGP--RFLLIGSPHVARQPQSARQADSA-RLWQTAETL 297 V+ E +L AA P+A QG +YGP R L+G P+S+R D A LW AE L Sbjct: 240 VRAGVEPILFAATSPDAVQGGYYGPGGRMALVGPTRRYDPPRSSRGEDLAPSLWAVAEKL 299 Query: 298 TGTAPP 303 T T P Sbjct: 300 TDTTLP 305 >ref|YP_003383614.1| short-chain dehydrogenase/reductase SDR [Kribbella flavida DSM 17836] gb|ADB34815.1| short-chain dehydrogenase/reductase SDR [Kribbella flavida DSM 17836] Length = 309 Score = 268 bits (686), Expect = 5e-70, Method: Composition-based stats. Identities = 182/303 (60%), Positives = 221/303 (72%), Gaps = 7/303 (2%) Query: 6 MYQLPDQRQRQIIVTGANSGTGKEATRRLAAAGADVVMAVRSEAKGEAARQEILKEFPKA 65 MY++PDQ + +VTGANSGTGKEA RRLAAAGA VV+AVR+ AKGEAAR EIL P A Sbjct: 1 MYEVPDQTGQYAVVTGANSGTGKEAARRLAAAGAHVVLAVRTVAKGEAARAEILARHPGA 60 Query: 66 SLAVRILDLSSLASVRTFADQMLSEGRPIDLLLNNAGIMMPPKRALSPDGFELQFATNFL 125 L VR +DL+ L SV FAD ++++G P+DLL+NNAG+M+PP+R L+ DGFELQF TNFL Sbjct: 61 LLDVRRIDLADLGSVAEFADALIADGVPLDLLVNNAGVMIPPERMLTADGFELQFGTNFL 120 Query: 126 GHFALTNLLLPLLLEAKAPRVTTITSSAAIGAKINFDDLQSERSYSPVTAYAQSKLACLL 185 G FALT LLPLLL A APRV T++S A +I FDDLQ +R Y V AYAQSKLA L+ Sbjct: 121 GPFALTLRLLPLLLAAPAPRVATMSSGMANFGRIEFDDLQWQRQYRRVRAYAQSKLADLM 180 Query: 186 LANQLAAIARERDWPLLSTSAHPGHTRTNLQTSGPNMGTD--STHKRLMFR--LVPSMDV 241 + +LAAIA ER WPLLST AHPG TRTNLQT+GP++G D S R++ R L PS DV Sbjct: 181 MGRRLAAIAAERGWPLLSTIAHPGITRTNLQTAGPSLGRDRPSAVDRMLLRLDLTPSQDV 240 Query: 242 KWATESLLQAALDPNAAQGAFYGPR--FLLIGSPHVARQPQSARQADS-ARLWQTAETLT 298 + TE LL AA+ P+A QGA+YGP F ++G AR P+ A +S ARLW TAE LT Sbjct: 241 EQGTEPLLVAAVSPDAVQGAYYGPSRWFEMVGPTKRARIPRRALDDNSGARLWATAEQLT 300 Query: 299 GTA 301 G + Sbjct: 301 GVS 303 >ref|YP_004331660.1| short-chain dehydrogenase/reductase SDR [Pseudonocardia dioxanivorans CB1190] gb|AEA23807.1| short-chain dehydrogenase/reductase SDR [Pseudonocardia dioxanivorans CB1190] Length = 308 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 173/303 (57%), Positives = 209/303 (68%), Gaps = 5/303 (1%) Query: 6 MYQLPDQRQRQIIVTGANSGTGKEATRRLAAAGADVVMAVRSEAKGEAARQEILKEFPKA 65 MY +PDQR R+I+VTGANSGTG+EAT RLAAAGA VVMAVR+ KGEAAR +IL+ P A Sbjct: 1 MYAVPDQRGRRIVVTGANSGTGREATARLAAAGARVVMAVRNTDKGEAARADILRGRPGA 60 Query: 66 SLAVRILDLSSLASVRTFADQMLSEGRPIDLLLNNAGIMMPPKRALSPDGFELQFATNFL 125 L VR LDL+ LASV FA ++ +G P+ +L+NNAG+M PP+R + DGFELQF +NFL Sbjct: 61 ELEVRRLDLADLASVAEFAQGLVDDGEPLHVLVNNAGVMAPPRRFTTADGFELQFGSNFL 120 Query: 126 GHFALTNLLLPLLLEAKAPRVTTITSSAAIGAKINFDDLQ-SERSYSPVTAYAQSKLACL 184 G FALT LLPLLL A APRV T++SSAA +I FDDLQ + R +SP+ +YAQSKLA + Sbjct: 121 GPFALTVRLLPLLLRADAPRVATMSSSAAWLGRIRFDDLQWTRRRWSPMRSYAQSKLADM 180 Query: 185 LLANQLAAIARERDWPLLSTSAHPGHTRTNLQTSGPNMGTDSTHKRL-MFRLVPSMDVKW 243 L+A QLA IAR R W L ST AHPG TRTNLQT+GP +G T + VPS DV Sbjct: 181 LMAQQLADIARRRGWDLRSTCAHPGFTRTNLQTAGPTLGGGRTSPMAGVPPFVPSQDVVV 240 Query: 244 ATESLLQAALDPNAAQGAFYGP--RFLLIGSPHVARQPQSARQ-ADSARLWQTAETLTGT 300 E LL A DP A G ++GP F L+G AR P+ R A ++RLW AE LTG Sbjct: 241 GAEPLLYAIADPGARNGGYWGPDGAFGLVGETAPARLPRHGRDLAVASRLWAEAERLTGV 300 Query: 301 APP 303 P Sbjct: 301 TLP 303