BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1013.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQ87595.1| Transcriptional regulatory protein [Sinorhizobium... 160 2e-37 ref|YP_002822881.1| transcriptional regulator [Sinorhizobium fre... 159 3e-37 ref|YP_001601238.1| LysR family transcriptional regulator [Gluco... 158 7e-37 ref|YP_002276117.1| LysR family transcriptional regulator [Gluco... 155 6e-36 ref|YP_606565.1| LysR family transcriptional regulator [Pseudomo... 150 1e-34 >gb|AAQ87595.1| Transcriptional regulatory protein [Sinorhizobium fredii NGR234] Length = 294 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 89/193 (46%), Positives = 119/193 (61%), Gaps = 3/193 (1%) Query: 3 LPPLENLRIFEAVARLQGFTAAGESLGLSHSAVSRRVSELESRLNVQLMHRTSRRLALTP 62 P L++LR FE VARL AA L L+H AVSRRVS+L L+++L+ R L LT Sbjct: 6 FPSLDDLRAFEVVARLGSVRAAASELNLTHGAVSRRVSKLSEHLDIRLLEPDGRGLRLTH 65 Query: 63 EGKVLLEAVQEALQRIEEATEEILRPARQRPLLVSCERSLAMRWLIPRLSQFQDAHPDLP 122 EG L +A AL + A E+I + P++VSCERS+AMRWLIPRLS+FQD P++ Sbjct: 66 EGTRLAQATTNALSLVASALEDIRKVDVSPPIVVSCERSVAMRWLIPRLSEFQDRQPEID 125 Query: 123 IYLSTGNGAVDVAREHIDVAIRRADFALDPRAVCISLFTEQTGPVALPGLSGK---ALLT 179 ++LS G G D AR+HI +AIRR DFA+D L E+ GPV P ++ + Sbjct: 126 LHLSVGGGGFDFARDHITLAIRRLDFAIDANWQVERLVEEEVGPVMHPAMTERFAAGDYI 185 Query: 180 RLHSTSRPDAWKT 192 L + +RPDAW+T Sbjct: 186 ALAAKTRPDAWQT 198 >ref|YP_002822881.1| transcriptional regulator [Sinorhizobium fredii NGR234] gb|ACP22128.1| putative transcriptional regulator [Sinorhizobium fredii NGR234] Length = 297 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 89/193 (46%), Positives = 119/193 (61%), Gaps = 3/193 (1%) Query: 3 LPPLENLRIFEAVARLQGFTAAGESLGLSHSAVSRRVSELESRLNVQLMHRTSRRLALTP 62 P L++LR FE VARL AA L L+H AVSRRVS+L L+++L+ R L LT Sbjct: 9 FPSLDDLRAFEVVARLGSVRAAASELNLTHGAVSRRVSKLSEHLDIRLLEPDGRGLRLTH 68 Query: 63 EGKVLLEAVQEALQRIEEATEEILRPARQRPLLVSCERSLAMRWLIPRLSQFQDAHPDLP 122 EG L +A AL + A E+I + P++VSCERS+AMRWLIPRLS+FQD P++ Sbjct: 69 EGTRLAQATTNALSLVASALEDIRKVDVSPPIVVSCERSVAMRWLIPRLSEFQDRQPEID 128 Query: 123 IYLSTGNGAVDVAREHIDVAIRRADFALDPRAVCISLFTEQTGPVALPGLSGK---ALLT 179 ++LS G G D AR+HI +AIRR DFA+D L E+ GPV P ++ + Sbjct: 129 LHLSVGGGGFDFARDHITLAIRRLDFAIDANWQVERLVEEEVGPVMHPAMTERFAAGDYI 188 Query: 180 RLHSTSRPDAWKT 192 L + +RPDAW+T Sbjct: 189 ALAAKTRPDAWQT 201 >ref|YP_001601238.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] emb|CAP54902.1| putative transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 285 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 91/191 (47%), Positives = 119/191 (62%), Gaps = 3/191 (1%) Query: 3 LPPLENLRIFEAVARLQGFTAAGESLGLSHSAVSRRVSELESRLNVQLMHRTSRRLALTP 62 +P L++LR FEAV RL AA L L+H A+SRRVS+L + L +QL+ R + TP Sbjct: 6 IPSLDDLRAFEAVTRLGSVRAAAIELALTHGAISRRVSKLAADLKLQLLEPDGRGVRPTP 65 Query: 63 EGKVLLEAVQEALQRIEEATEEILRPARQRPLLVSCERSLAMRWLIPRLSQFQDAHPDLP 122 +G+ L A +AL+ I A EI P P+++SCERSLAMRWLIPRLS FQD HP + Sbjct: 66 DGERLALATSDALKGISTALAEIRSPLTSPPIVLSCERSLAMRWLIPRLSDFQDRHPAID 125 Query: 123 IYLSTGNGAVDVAREHIDVAIRRADFALDPRAVCISLFTEQTGPVALPGLSGK---ALLT 179 ++LSTG G +D RE I +AIRR DF LDP +L E GPV P ++G+ Sbjct: 126 VHLSTGGGPLDFERERITLAIRRLDFPLDPDWTITTLTAEAVGPVMRPDMAGRFEDGDYL 185 Query: 180 RLHSTSRPDAW 190 L S +RP+AW Sbjct: 186 ALGSRTRPEAW 196 >ref|YP_002276117.1| LysR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gb|ACI51502.1| transcriptional regulator, LysR family [Gluconacetobacter diazotrophicus PAl 5] Length = 287 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 95/199 (47%), Positives = 120/199 (60%), Gaps = 6/199 (3%) Query: 3 LPPLENLRIFEAVARLQGFTAAGESLGLSHSAVSRRVSELESRLNVQLMHRTSRRLALTP 62 +P L++LR F AV RL AA L L+H AVSRRVS+L + LN+ L+ R + T Sbjct: 6 IPSLDDLRAFAAVVRLGSVRAAAVELALTHGAVSRRVSKLAAELNLTLLEPDGRGVRPTR 65 Query: 63 EGKVLLEAVQEALQRIEEATEEILRPARQRPLLVSCERSLAMRWLIPRLSQFQDAHPDLP 122 +G L A +AL I EI A P+++SCERSLAMRWLIPRLS FQD HP + Sbjct: 66 DGARLARAATDALGGIAATLVEIRSSAATPPIVLSCERSLAMRWLIPRLSDFQDRHPGID 125 Query: 123 IYLSTGNGAVDVAREHIDVAIRRADFALDPRAVCISLFTEQTGPVALPGLSGKAL---LT 179 ++LSTG GA+D ARE I +AIRR DF LDP +L E GPV P ++ + Sbjct: 126 VHLSTGGGALDFARERITLAIRRLDFPLDPDWAVTTLVPETVGPVVRPDMAAQLAGGDYL 185 Query: 180 RLHSTSRPDAWK---TSRP 195 L S +RP+AWK TSRP Sbjct: 186 ALGSRTRPEAWKNWLTSRP 204 >ref|YP_606565.1| LysR family transcriptional regulator [Pseudomonas entomophila L48] emb|CAK13750.1| putative transcriptional regulator, LysR family [Pseudomonas entomophila L48] Length = 301 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 85/192 (44%), Positives = 114/192 (59%), Gaps = 3/192 (1%) Query: 1 MKLPPLENLRIFEAVARLQGFTAAGESLGLSHSAVSRRVSELESRLNVQLMHRTSRRLAL 60 MKLPPL LR F+ A + F A E L ++H AVSR+V LE L V+L R +R L L Sbjct: 1 MKLPPLNALRYFDIAAETESFVRAAEHLHVTHGAVSRQVRLLEESLGVELFDRRNRALFL 60 Query: 61 TPEGKVLLEAVQEALQRIEEATEEILRPARQRPLLVSCERSLAMRWLIPRLSQFQDAHPD 120 T G+ L + +++E+ + + PA L+VSCE ++AMRWLIPRL +F AHPD Sbjct: 61 TRAGRELQATTRTIFEQLEQTVQRLHPPAHDNVLVVSCEPTIAMRWLIPRLPRFHAAHPD 120 Query: 121 LPIYLSTGNGAVDVAREHIDVAIRRADFALDPRAVCISLFTEQTGPVALPGLSGKALLTR 180 L ++L G VD AR +D+A+RR DF D + + + E GPVA G G+ L Sbjct: 121 LQLHLVAAGGPVDFARAGVDLALRRDDFHWDHQLHSLKICDEWIGPVAKAGFKGRRL--- 177 Query: 181 LHSTSRPDAWKT 192 LHS +RPDAW T Sbjct: 178 LHSATRPDAWAT 189