BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1009.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EFV87182.1| LysR family Transcriptional regulator [Achromobac... 229 4e-58 ref|YP_546935.1| LysR family transcriptional regulator [Polaromo... 229 4e-58 ref|ZP_06687712.1| LysR family transcriptional regulator [Achrom... 227 2e-57 gb|EGP43483.1| LysR family regulatory helix-turn-helix protein 8... 226 3e-57 ref|YP_001862757.1| LysR family transcriptional regulator [Burkh... 226 4e-57 >gb|EFV87182.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 298 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 131/271 (48%), Positives = 177/271 (65%), Gaps = 1/271 (0%) Query: 1 MREFNLDHLRTLLAVVDSGSLSNAAAALHLAQPTISLHLRELESRLDIPLLKRNRHGVKV 60 MRE NLD LRTL+A+ D GS + AA ALHLA PT+SLH+ +LE+R+ PLL R R V+ Sbjct: 1 MREINLDRLRTLVAIADLGSFAEAARALHLAPPTVSLHVADLEARIGAPLLTRTRGQVRP 60 Query: 61 TAGGKILIDYARKLLALADQASEAVGHYRESVQGVVRLGASTGLITHEMPRLLQYMAQHR 120 T G L++ AR+LLA ADQA + V + + G VRLGASTG I H +PR L+ + + Sbjct: 61 TPIGDTLLERARRLLADADQALDDVQRQVQGLGGRVRLGASTGAIAHLLPRALETLGREH 120 Query: 121 PELKIELAVTTTAMAMEKLQADELDLALVGATTRCCLTTLTR-WRSDPLMAFLPAAWTVP 179 P + +++AV T+ +++L+ LD+ LV + R WR DP+MAFLPAAW P Sbjct: 121 PGIDVQVAVLTSQETLQQLRDGTLDVGLVALPQPPVPGLVLRPWRRDPIMAFLPAAWDAP 180 Query: 180 KRVSPAWLARQPLLMNEPGSALHHQTLQWFSRAGFFPRPRIALNNGEAIKGLVAAGYGAA 239 RV+PAWL +PL++N+ + L QT +WF+ AG PRPRI LN +AIK LVAAGYGA Sbjct: 181 ARVTPAWLGERPLILNDASTRLSRQTGEWFAGAGLNPRPRIQLNYNDAIKSLVAAGYGAT 240 Query: 240 ILPAEAGQSVSSLQIQVRPITPAMERPTFLA 270 +LP EA +I +RP+ PA+ RP +A Sbjct: 241 LLPHEATAPQPDPRIVMRPLRPALWRPLGIA 271 >ref|YP_546935.1| LysR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE42037.1| transcriptional regulator, LysR family [Polaromonas sp. JS666] Length = 296 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 127/290 (43%), Positives = 187/290 (64%), Gaps = 2/290 (0%) Query: 1 MREFNLDHLRTLLAVVDSGSLSNAAAALHLAQPTISLHLRELESRLDIPLLKRNRHGVKV 60 MRE NLD LRTL+++ D G+ S AA ALHLAQPT+SLH+ ELE+RL L+ R V Sbjct: 1 MRELNLDQLRTLVSIADLGTFSAAARALHLAQPTVSLHISELEARLGAQLVVRGGRSVVP 60 Query: 61 TAGGKILIDYARKLLALADQASEAVGHYRESVQGVVRLGASTGLITHEMPRLLQYMAQHR 120 TA G +L++ AR+LL AD A++AV + E G VRLG STG++ H +PR+L+ MA+ Sbjct: 61 TAAGAVLVERARRLLRDADDATDAVKRHVEGRLGRVRLGTSTGIVVHLLPRVLELMARAH 120 Query: 121 PELKIELAVTTTAMAMEKLQADELDLALVGATTRCCLT-TLTRWRSDPLMAFLPAAWTVP 179 PE+ +E+++ +A ME+L LD+ LV ++ WRSDP+MAF+P W P Sbjct: 121 PEIDVEVSILGSAETMERLGQGTLDVGLVATPQPARRELVMSHWRSDPMMAFIPTGWPAP 180 Query: 180 KRVSPAWLARQPLLMNEPGSALHHQTLQWFSRAGFFPRPRIALNNGEAIKGLVAAGYGAA 239 KR++P WL +PL+ N+ + ++ T++WF++AG PR RI LN EA+K LV AGYGAA Sbjct: 181 KRITPPWLMDKPLIFNDSTTHMYRLTMEWFAKAGHTPRARIELNYTEAMKSLVVAGYGAA 240 Query: 240 ILPAE-AGQSVSSLQIQVRPITPAMERPTFLACKKARTVPPSVKAVMEVL 288 +LP E AG + + +QV P+ PA+ R T + + + + + +++ L Sbjct: 241 LLPLEQAGAAATPNGVQVLPLKPALTRHTAVVHRPLAALDGATRNLLQTL 290 >ref|ZP_06687712.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF75362.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 297 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 133/289 (46%), Positives = 189/289 (65%), Gaps = 2/289 (0%) Query: 1 MREFNLDHLRTLLAVVDSGSLSNAAAALHLAQPTISLHLRELESRLDIPLLKRNRHGVKV 60 MRE +LD LRTL+A+ D GS ++AA ALHLA PT+SLH+ +LE+R+ PLL R R V+ Sbjct: 1 MREISLDRLRTLVAIADLGSFADAARALHLAPPTVSLHVADLEARIGAPLLTRKRGQVRP 60 Query: 61 TAGGKILIDYARKLLALADQASEAVGHYRESVQGVVRLGASTGLITHEMPRLLQYMAQHR 120 T G+ L++ AR+LLA ADQA + V + + G VRLGASTG I H +P+ L+ + +H Sbjct: 61 TTIGETLLERARRLLAEADQALDDVQRQVQGLSGRVRLGASTGAIAHLLPQALETLGRHH 120 Query: 121 PELKIELAVTTTAMAMEKLQADELDLALVGATTRCCLTTLTR-WRSDPLMAFLPAAWTVP 179 P + +++AV T+ +++L LD+ LV L + WR DP+MAF+PA+W P Sbjct: 121 PGIDVQVAVLTSQETLQRLNEGTLDVGLVALPQPPIDGLLIKPWRRDPVMAFMPASWDAP 180 Query: 180 KRVSPAWLARQPLLMNEPGSALHHQTLQWFSRAGFFPRPRIALNNGEAIKGLVAAGYGAA 239 RV+PAWLA +PL++N+ + L QT +WF+ AG PR RI LN +AIK LVAAGYGA Sbjct: 181 ARVTPAWLATRPLILNDTTTRLSRQTAEWFAAAGLNPRARIQLNYNDAIKSLVAAGYGAT 240 Query: 240 ILPAEAGQSVSSLQIQVRPITPAMERPTFLACKKARTVPPSVKAVMEVL 288 +LP EA + +I +R + PA+ RP +A +A V S + V++VL Sbjct: 241 LLPHEATAPQADARIIMRALRPALWRPLGIA-HRAEKVERSTQHVLDVL 288 >gb|EGP43483.1| LysR family regulatory helix-turn-helix protein 89 [Achromobacter xylosoxidans AXX-A] Length = 298 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 130/271 (47%), Positives = 178/271 (65%), Gaps = 1/271 (0%) Query: 1 MREFNLDHLRTLLAVVDSGSLSNAAAALHLAQPTISLHLRELESRLDIPLLKRNRHGVKV 60 MRE NLD LRTL+A+ D GS ++AA ALHLA PT+SLH+ +LE+R+ PLL R R V+ Sbjct: 1 MREINLDRLRTLVAIADLGSFADAARALHLAPPTVSLHVADLEARVGAPLLTRKRGQVRP 60 Query: 61 TAGGKILIDYARKLLALADQASEAVGHYRESVQGVVRLGASTGLITHEMPRLLQYMAQHR 120 T G L++ AR+LLA ADQA + V + + G VRLGASTG I H +P+ L+ + + Sbjct: 61 TPIGDTLLERARRLLAEADQALDDVQRQVQGLAGRVRLGASTGAIAHLLPQALEALGREH 120 Query: 121 PELKIELAVTTTAMAMEKLQADELDLALVGATTRCCLTTLTR-WRSDPLMAFLPAAWTVP 179 P + +++AV T+ +++L LD+ LV + R WR DP+MAFLPAAW P Sbjct: 121 PGIDVQVAVLTSQETLQQLGDGALDVGLVALPQPPVPGLVLRPWRRDPIMAFLPAAWNPP 180 Query: 180 KRVSPAWLARQPLLMNEPGSALHHQTLQWFSRAGFFPRPRIALNNGEAIKGLVAAGYGAA 239 RV+PAWL +PL++N+ + L QT +WF+ AG PRPRI LN +AIK LVAAGYGA Sbjct: 181 ARVTPAWLGERPLILNDASTRLSRQTGEWFAAAGLQPRPRIQLNYNDAIKSLVAAGYGAT 240 Query: 240 ILPAEAGQSVSSLQIQVRPITPAMERPTFLA 270 +LP EA + +I +RP+ PA+ RP +A Sbjct: 241 LLPHEATAPQADPRIAMRPLRPALWRPLGIA 271 >ref|YP_001862757.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC75711.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 294 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 132/289 (45%), Positives = 187/289 (64%), Gaps = 2/289 (0%) Query: 1 MREFNLDHLRTLLAVVDSGSLSNAAAALHLAQPTISLHLRELESRLDIPLLKRNRHGVKV 60 MRE +LD LRTL+A+ D GS ++AA ALHLA PT+SLH+ ELE R+ PLL R R V+ Sbjct: 1 MREISLDRLRTLVAIADRGSFADAARALHLAPPTVSLHIAELEQRVGAPLLSRKRGQVRP 60 Query: 61 TAGGKILIDYARKLLALADQASEAVGHYRESVQGVVRLGASTGLITHEMPRLLQYMAQHR 120 +A G++L++ AR+LLA A+Q E + + ++G RLGASTG I H +P+ L+ + QH Sbjct: 61 SAIGEVLVERARRLLADAEQTLEDIQRQVQGLEGRARLGASTGAIAHLLPQALEVLRQHH 120 Query: 121 PELKIELAVTTTAMAMEKLQADELDLALVGATTRCCLTTLTR-WRSDPLMAFLPAAWTVP 179 P + I++AV T+ + +L LD+ LV + + + WR DP+MAF+PA W P Sbjct: 121 PAIDIQIAVLTSQETLSRLADGTLDVGLVALPQPPVVGLVIKPWRRDPVMAFVPAHWRCP 180 Query: 180 KRVSPAWLARQPLLMNEPGSALHHQTLQWFSRAGFFPRPRIALNNGEAIKGLVAAGYGAA 239 RV+P WLA QPL++N+ + L T +WF+ AG P PRI LN +AIK LVAAGYGAA Sbjct: 181 ARVTPEWLAAQPLILNDATTRLSRLTAEWFATAGHHPVPRIQLNFNDAIKSLVAAGYGAA 240 Query: 240 ILPAEAGQSVSSLQIQVRPITPAMERPTFLACKKARTVPPSVKAVMEVL 288 +LP EA + +I +RP+ PA+ R +A +A V S + V++VL Sbjct: 241 LLPHEATTPLPDKRIVMRPLRPALWRRLGIA-YRAGYVERSTQHVLDVL 288