BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1005.p (218 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002908587.1| ABC polar amino acid family transporter inne... 343 1e-92 ref|ZP_03264270.1| polar amino acid ABC transporter, inner membr... 306 1e-81 ref|YP_555956.1| polar amino acid ABC transporter inner membrane... 306 2e-81 ref|YP_003522352.1| YckA [Pantoea ananatis LMG 20103] >gi|291154... 226 2e-57 dbj|BAK14096.1| probable amino-acid ABC transporter permease pro... 224 5e-57 >ref|YP_002908587.1| ABC polar amino acid family transporter inner membrane subunit [Burkholderia glumae BGR1] gb|ACR31352.1| ABC polar amino acid family transporter inner membrane subunit [Burkholderia glumae BGR1] Length = 218 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 194/218 (88%), Positives = 211/218 (96%) Query: 1 MRWNDMADFVPILLQGAGMTIFITLSCLVLSTLLGLVWALLKMSRHAPVRQVTATLINIV 60 MRW+D+ +FVPILLQGAG+T+FIT+SCLVLST+LGLVWALLKMSRHAPVR+ ATLIN+V Sbjct: 1 MRWSDIVEFVPILLQGAGLTVFITISCLVLSTMLGLVWALLKMSRHAPVRRAAATLINVV 60 Query: 61 RGLPMIVLLFYIYFVFPSIHIQLSALQASIIGLAFGYSTYVAEIIRSGIESVDMGQYEAA 120 RGLPMIVLLFYIYFV PSI +Q+SALQASI+GLAFGYSTYVAEIIRSGIESVD GQYEAA Sbjct: 61 RGLPMIVLLFYIYFVLPSIGLQMSALQASIVGLAFGYSTYVAEIIRSGIESVDPGQYEAA 120 Query: 121 QSIGMGRVKTMTRVILPQAIKVALPPYSNTLVSMLKDSSLASTITVTEMTRQGTLLAAAT 180 QSIGMGRVKTMTRVILPQAIKVALPPYSNTLVSMLKDSSLASTITV+EMTRQG+L+AAAT Sbjct: 121 QSIGMGRVKTMTRVILPQAIKVALPPYSNTLVSMLKDSSLASTITVSEMTRQGSLIAAAT 180 Query: 181 FQNLEVYTLIAVGYLAMSLPLMSLTKMLERRFGKHKVK 218 FQNLEVYTL+A+GYLAMSLPLMSLTK LERRFGKHKVK Sbjct: 181 FQNLEVYTLVAIGYLAMSLPLMSLTKALERRFGKHKVK 218 >ref|ZP_03264270.1| polar amino acid ABC transporter, inner membrane subunit [Burkholderia sp. H160] gb|EEA04114.1| polar amino acid ABC transporter, inner membrane subunit [Burkholderia sp. H160] Length = 218 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 170/218 (77%), Positives = 195/218 (89%) Query: 1 MRWNDMADFVPILLQGAGMTIFITLSCLVLSTLLGLVWALLKMSRHAPVRQVTATLINIV 60 MRW D+ADFVPILLQGA M+I ITL CL+LST+LGL WALLKMSR+ V + + +IN+V Sbjct: 1 MRWQDIADFVPILLQGAVMSIIITLGCLLLSTVLGLTWALLKMSRYPHVVRGVSAMINVV 60 Query: 61 RGLPMIVLLFYIYFVFPSIHIQLSALQASIIGLAFGYSTYVAEIIRSGIESVDMGQYEAA 120 RGLPMIVLLFYIYFV P IHIQ++ALQASIIGL FGYSTY+AEI R+GIE+VD GQYEAA Sbjct: 61 RGLPMIVLLFYIYFVLPDIHIQVTALQASIIGLGFGYSTYIAEIFRAGIEAVDPGQYEAA 120 Query: 121 QSIGMGRVKTMTRVILPQAIKVALPPYSNTLVSMLKDSSLASTITVTEMTRQGTLLAAAT 180 QSIGMGRVKTM RVILPQAIKVALPPYSNTLV MLKDSSLASTITV EMTR+G L+A++T Sbjct: 121 QSIGMGRVKTMVRVILPQAIKVALPPYSNTLVMMLKDSSLASTITVAEMTREGQLIASST 180 Query: 181 FQNLEVYTLIAVGYLAMSLPLMSLTKMLERRFGKHKVK 218 FQNL VYTL+A+GYLAMSLPLMS+T+ LERRFG+H+ + Sbjct: 181 FQNLTVYTLVALGYLAMSLPLMSMTRNLERRFGRHRAR 218 >ref|YP_555956.1| polar amino acid ABC transporter inner membrane protein [Burkholderia xenovorans LB400] gb|ABE36606.1| amino acid ABC transporter membrane protein, PAAT family [Burkholderia xenovorans LB400] Length = 218 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 172/218 (78%), Positives = 195/218 (89%) Query: 1 MRWNDMADFVPILLQGAGMTIFITLSCLVLSTLLGLVWALLKMSRHAPVRQVTATLINIV 60 M W+D+ DFVPIL+QGA M+I ITL CL+LST+LGL WALLKMSR+ V + +T+IN+V Sbjct: 1 MHWHDIVDFVPILIQGAVMSIVITLGCLLLSTVLGLTWALLKMSRYPLVVRGVSTMINVV 60 Query: 61 RGLPMIVLLFYIYFVFPSIHIQLSALQASIIGLAFGYSTYVAEIIRSGIESVDMGQYEAA 120 RGLPMIVLLFYIYFV P IHIQ+SALQASIIGL FGYSTYVAEI R+GIE+VD GQYEAA Sbjct: 61 RGLPMIVLLFYIYFVLPEIHIQVSALQASIIGLGFGYSTYVAEIFRAGIEAVDPGQYEAA 120 Query: 121 QSIGMGRVKTMTRVILPQAIKVALPPYSNTLVSMLKDSSLASTITVTEMTRQGTLLAAAT 180 QSIGMGRVKTM RVILPQAIKVALPPYSNTLV MLKDSSLASTITV EMTR+G L+AA+T Sbjct: 121 QSIGMGRVKTMVRVILPQAIKVALPPYSNTLVMMLKDSSLASTITVAEMTREGQLIAAST 180 Query: 181 FQNLEVYTLIAVGYLAMSLPLMSLTKMLERRFGKHKVK 218 FQNL VYTL+A+GYLAMSLPLMS+T+ LERRFG+HK + Sbjct: 181 FQNLTVYTLVAIGYLAMSLPLMSMTRTLERRFGRHKAR 218 >ref|YP_003522352.1| YckA [Pantoea ananatis LMG 20103] gb|ADD79224.1| YckA [Pantoea ananatis LMG 20103] Length = 216 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 130/211 (61%), Positives = 161/211 (76%) Query: 1 MRWNDMADFVPILLQGAGMTIFITLSCLVLSTLLGLVWALLKMSRHAPVRQVTATLINIV 60 M W+ + ++P LLQGA MTI+IT+ L++ST LGLV+A KM + + +INI Sbjct: 1 MDWSSIHVYLPFLLQGAEMTIYITILSLLISTPLGLVFAAAKMCPFKIISWPVSVIINIT 60 Query: 61 RGLPMIVLLFYIYFVFPSIHIQLSALQASIIGLAFGYSTYVAEIIRSGIESVDMGQYEAA 120 R LPMIV+LFYIYFVFP I I L++ QAS++G+AF +ST++AEI RSGIESVD GQ EAA Sbjct: 61 RALPMIVVLFYIYFVFPDIGITLTSFQASVVGIAFCFSTFLAEIFRSGIESVDRGQLEAA 120 Query: 121 QSIGMGRVKTMTRVILPQAIKVALPPYSNTLVSMLKDSSLASTITVTEMTRQGTLLAAAT 180 +S+GM K M RVILPQA VALPPYSNTLV MLKDS+LASTI VTEMTRQG LLAA+T Sbjct: 121 RSMGMSFFKAMRRVILPQAFHVALPPYSNTLVMMLKDSALASTIAVTEMTRQGQLLAAST 180 Query: 181 FQNLEVYTLIAVGYLAMSLPLMSLTKMLERR 211 F N VYTL+A+ YL + +PL++ TK LE R Sbjct: 181 FDNTTVYTLVALLYLTLCMPLLAFTKHLENR 211 >dbj|BAK14096.1| probable amino-acid ABC transporter permease protein YckA [Pantoea ananatis AJ13355] Length = 216 Score = 224 bits (572), Expect = 5e-57, Method: Composition-based stats. Identities = 129/211 (61%), Positives = 160/211 (75%) Query: 1 MRWNDMADFVPILLQGAGMTIFITLSCLVLSTLLGLVWALLKMSRHAPVRQVTATLINIV 60 M W+ + ++P LLQGA MTI+IT+ L++ST LGLV+A KM + + +INI Sbjct: 1 MDWSSIHVYLPFLLQGAEMTIYITILSLLISTPLGLVFAAAKMCPFKIISWPVSVIINIT 60 Query: 61 RGLPMIVLLFYIYFVFPSIHIQLSALQASIIGLAFGYSTYVAEIIRSGIESVDMGQYEAA 120 R LPMIV+LFY YFVFP I I L++ QAS++G+AF +ST++AEI RSGIESVD GQ EAA Sbjct: 61 RALPMIVVLFYTYFVFPDIGITLTSFQASVVGIAFCFSTFLAEIFRSGIESVDRGQLEAA 120 Query: 121 QSIGMGRVKTMTRVILPQAIKVALPPYSNTLVSMLKDSSLASTITVTEMTRQGTLLAAAT 180 +S+GM K M RVILPQA VALPPYSNTLV MLKDS+LASTI VTEMTRQG LLAA+T Sbjct: 121 RSMGMSFFKAMRRVILPQAFHVALPPYSNTLVMMLKDSALASTIAVTEMTRQGQLLAAST 180 Query: 181 FQNLEVYTLIAVGYLAMSLPLMSLTKMLERR 211 F N VYTL+A+ YL + +PL++ TK LE R Sbjct: 181 FDNTTVYTLVALLYLTLCMPLLAFTKHLENR 211