BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1004.p (269 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002908586.1| ABC polar amino acid family transporter peri... 386 e-105 ref|ZP_03264271.1| extracellular solute-binding protein family 3... 302 4e-80 ref|YP_555957.1| polar amino acid ABC transporter periplasmic li... 297 1e-78 ref|YP_003522351.1| ArtJ [Pantoea ananatis LMG 20103] >gi|291154... 247 1e-63 dbj|BAK14097.1| arginine-binding periplasmic protein 2 precursor... 216 3e-54 >ref|YP_002908586.1| ABC polar amino acid family transporter periplasmic ligand binding protein [Burkholderia glumae BGR1] gb|ACR31351.1| ABC polar amino acid family transporter periplasmic ligand binding protein [Burkholderia glumae BGR1] Length = 268 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 200/262 (76%), Positives = 223/262 (85%), Gaps = 1/262 (0%) Query: 8 RASKKHIARALRNLASGLATCLMLVTMTQAQAAGPAKVSAGTTPSSVPNAFLNIKTQQIE 67 RAS KH + R L + + + A AA VSAGTTPSS+PNAFLNIKT QIE Sbjct: 8 RASGKHASFFQRILVTAALAVAAALGASPAWAA-QLTVSAGTTPSSIPNAFLNIKTNQIE 66 Query: 68 GVMPDVIREIGKREGFEISFDIVPFSALVQSVVSDKIDLIVAGMSPTPKRKEVVDFSEPV 127 GVMPDVIR IG+REGF +SF+++P+SAL+QSVVSDKIDLIVAGM+PT +R+EV+DFS+PV Sbjct: 67 GVMPDVIRAIGQREGFGVSFNVIPYSALIQSVVSDKIDLIVAGMTPTSRREEVIDFSQPV 126 Query: 128 AEFGKGIIVSASDKKQYRTIQDLAGTVIGAGAGEETSEELMKLGIFKEVKLYNTAADMAR 187 A FGKGIIVSA+DK YRTI DL GTV+GAGAGEETSEEL KLGIFKEVKLYN AADMAR Sbjct: 127 AFFGKGIIVSANDKHAYRTIDDLKGTVVGAGAGEETSEELAKLGIFKEVKLYNNAADMAR 186 Query: 188 DVALGRITAGFNDYPIWKAQEANGALQGCRVVDGFKPLRKVPIAFGVKKGNTALLTKIND 247 DV LGRITA FNDYPIWKAQEA G LQGCRVVDGFKPLR+VPIAFGVKKGNTALL+KIND Sbjct: 187 DVTLGRITAAFNDYPIWKAQEAAGTLQGCRVVDGFKPLRQVPIAFGVKKGNTALLSKIND 246 Query: 248 GLVKIKADGTLDQILKKWNFVD 269 GL KIKADGTLD+ILKKWN+VD Sbjct: 247 GLAKIKADGTLDKILKKWNYVD 268 >ref|ZP_03264271.1| extracellular solute-binding protein family 3 [Burkholderia sp. H160] gb|EEA04115.1| extracellular solute-binding protein family 3 [Burkholderia sp. H160] Length = 267 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 153/247 (61%), Positives = 191/247 (77%), Gaps = 3/247 (1%) Query: 22 ASGLATCLMLVTMTQAQAAGPAKVSAGTTPSSVPNAFLNIKTQQIEGVMPDVIREIGKRE 81 +GLA +M + A AA A ++AG+ PSS P F+++KTQ+IEG+MPDV++EIGKRE Sbjct: 23 GAGLAITMMF---SAAHAAETATLTAGSPPSSAPTTFMDVKTQKIEGLMPDVVKEIGKRE 79 Query: 82 GFEISFDIVPFSALVQSVVSDKIDLIVAGMSPTPKRKEVVDFSEPVAEFGKGIIVSASDK 141 GF +S+D VPFSAL+QSVVS KID+IVAGM+PTPKR EVVDFS+PV FG+GIIV ++K Sbjct: 80 GFNVSYDAVPFSALIQSVVSGKIDIIVAGMTPTPKRAEVVDFSQPVTAFGEGIIVKDTNK 139 Query: 142 KQYRTIQDLAGTVIGAGAGEETSEELMKLGIFKEVKLYNTAADMARDVALGRITAGFNDY 201 Y ++QD+ G +GA G + ++L KLGIF EVK+Y++ ADM RDVALGRI AGFNDY Sbjct: 140 AVYHSVQDMKGMTVGAPTGTDYGDQLKKLGIFTEVKMYDSPADMTRDVALGRIVAGFNDY 199 Query: 202 PIWKAQEANGALQGCRVVDGFKPLRKVPIAFGVKKGNTALLTKINDGLVKIKADGTLDQI 261 PI KAQEA GA+ G RV D + P+ K IA VKKGNTAL+TKIND L K+KADGTLD I Sbjct: 200 PILKAQEAAGAMAGTRVDDAYVPMEKFDIAIAVKKGNTALMTKINDALTKMKADGTLDAI 259 Query: 262 LKKWNFV 268 LKKW+ V Sbjct: 260 LKKWHLV 266 >ref|YP_555957.1| polar amino acid ABC transporter periplasmic ligand-binding protein [Burkholderia xenovorans LB400] gb|ABE36607.1| amino acid ABC transporter substrate-binding protein, PAAT family [Burkholderia xenovorans LB400] Length = 270 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 149/246 (60%), Positives = 187/246 (76%) Query: 22 ASGLATCLMLVTMTQAQAAGPAKVSAGTTPSSVPNAFLNIKTQQIEGVMPDVIREIGKRE 81 +GLA +M+ A A ++AG+ PSS P F+N+KTQQIEG+MPDV++EIGKRE Sbjct: 23 GAGLAMSMMIGAAQVTHGAEAATLTAGSPPSSAPTTFMNVKTQQIEGLMPDVVKEIGKRE 82 Query: 82 GFEISFDIVPFSALVQSVVSDKIDLIVAGMSPTPKRKEVVDFSEPVAEFGKGIIVSASDK 141 GF +S+D VPFSAL+QSVVS KID+IVAGM+PT +R EVVDFS+PV FG+GIIV ++K Sbjct: 83 GFNVSYDAVPFSALIQSVVSGKIDIIVAGMTPTARRAEVVDFSQPVTAFGEGIIVKDTNK 142 Query: 142 KQYRTIQDLAGTVIGAGAGEETSEELMKLGIFKEVKLYNTAADMARDVALGRITAGFNDY 201 Y+++QDL G +GA G + ++L KLGIF EVK+Y++ ADM RDVALGRI AGFNDY Sbjct: 143 TNYKSVQDLKGMTVGAPTGTDYGDQLKKLGIFTEVKMYDSPADMTRDVALGRIVAGFNDY 202 Query: 202 PIWKAQEANGALQGCRVVDGFKPLRKVPIAFGVKKGNTALLTKINDGLVKIKADGTLDQI 261 PI KAQEA GA+ G RV D + P+ K IA VKKGN+ALL KIND L K+KADG+LD I Sbjct: 203 PILKAQEAAGAMAGTRVDDAYVPMEKFDIAVAVKKGNSALLAKINDALTKMKADGSLDAI 262 Query: 262 LKKWNF 267 LKKW+ Sbjct: 263 LKKWHL 268 >ref|YP_003522351.1| ArtJ [Pantoea ananatis LMG 20103] gb|ADD79223.1| ArtJ [Pantoea ananatis LMG 20103] Length = 251 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 124/248 (50%), Positives = 172/248 (69%) Query: 18 LRNLASGLATCLMLVTMTQAQAAGPAKVSAGTTPSSVPNAFLNIKTQQIEGVMPDVIREI 77 + ++ S + L+ V + +A A ++AG+ PSS P FL+ KT +IEG MPDV E+ Sbjct: 1 MMSIRSHVTMALLSVALGVTYSAHAATLTAGSPPSSAPTTFLDTKTGKIEGFMPDVAAEV 60 Query: 78 GKREGFEISFDIVPFSALVQSVVSDKIDLIVAGMSPTPKRKEVVDFSEPVAEFGKGIIVS 137 KR+ +++F VPFS L+QSV++ KID+IVAGM+PTP+R++ + FS+PV FG G++V Sbjct: 61 AKRQHLDVNFTAVPFSTLIQSVIAGKIDMIVAGMTPTPEREKRISFSQPVTAFGPGLVVR 120 Query: 138 ASDKKQYRTIQDLAGTVIGAGAGEETSEELMKLGIFKEVKLYNTAADMARDVALGRITAG 197 +KK YR+ QDL G ++G G + ++ L+K GI KEVK+Y++ ADM RD++LGRI AG Sbjct: 121 DDNKKVYRSQQDLKGDIVGTMTGTDYTQALIKSGIPKEVKVYDSPADMMRDLSLGRIAAG 180 Query: 198 FNDYPIWKAQEANGALQGCRVVDGFKPLRKVPIAFGVKKGNTALLTKINDGLVKIKADGT 257 NDYPI K QE +GA +G VVDG+KP P+AFGVKKGN LL IN L +KADGT Sbjct: 181 MNDYPIMKYQEKSGAYKGMHVVDGYKPEHIAPMAFGVKKGNDKLLADINTALTAMKADGT 240 Query: 258 LDQILKKW 265 L +I KW Sbjct: 241 LQKIKAKW 248 >dbj|BAK14097.1| arginine-binding periplasmic protein 2 precursor ArtJ [Pantoea ananatis AJ13355] Length = 199 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 106/196 (54%), Positives = 142/196 (72%) Query: 70 MPDVIREIGKREGFEISFDIVPFSALVQSVVSDKIDLIVAGMSPTPKRKEVVDFSEPVAE 129 MPDV E+ KR+ +++F VPFS L+QSV++ KID+IVAGM+PTP+R++ + FS+PV Sbjct: 1 MPDVAAEVAKRQHLDVNFTAVPFSTLIQSVIAGKIDMIVAGMTPTPEREKRISFSQPVTA 60 Query: 130 FGKGIIVSASDKKQYRTIQDLAGTVIGAGAGEETSEELMKLGIFKEVKLYNTAADMARDV 189 FG G++V +KK YR+ QDL G ++G G + ++ L+K GI KEVK+Y++ ADM RD+ Sbjct: 61 FGPGLVVRDDNKKVYRSQQDLKGDIVGTMTGTDYTQALIKSGIPKEVKVYDSPADMMRDL 120 Query: 190 ALGRITAGFNDYPIWKAQEANGALQGCRVVDGFKPLRKVPIAFGVKKGNTALLTKINDGL 249 +LGRI AG NDYPI K QE +GA +G VVDG+KP P+AFGVKKGN LL IN L Sbjct: 121 SLGRIAAGMNDYPIMKYQEKSGAYKGMHVVDGYKPEHIAPMAFGVKKGNDKLLADINTAL 180 Query: 250 VKIKADGTLDQILKKW 265 +KADGTL +I KW Sbjct: 181 TAMKADGTLQKIKAKW 196