BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1003.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002908584.1| XRE family transcriptional regulator [Burkho... 278 5e-73 ref|ZP_03264275.1| transcriptional regulator, XRE family [Burkho... 278 6e-73 ref|YP_555961.1| transcriptional regulator [Burkholderia xenovor... 271 8e-71 ref|YP_003522350.1| PuuR [Pantoea ananatis LMG 20103] >gi|291154... 189 2e-46 dbj|BAK14098.1| HTH-type transcriptional regulator PuuR [Pantoea... 189 3e-46 >ref|YP_002908584.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] gb|ACR31349.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] Length = 204 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 144/204 (70%), Positives = 171/204 (83%) Query: 30 MTQMKIKKKDPAAAPHADVGARLKALRLERGMSVNELAASAGVSVGTVSQVERNKANPSV 89 M ++KKKD H+DVG RL+ALR+E+G+SVNELA AGVSVGTVSQVERNKANPSV Sbjct: 1 MKPAQVKKKDVTELRHSDVGGRLRALRVEQGLSVNELAMRAGVSVGTVSQVERNKANPSV 60 Query: 90 RILERLRVALSVPLSALLEDAEATPDYDASDVVRRAKDRPVFDVGSRGMQKELLSPQGNH 149 RILERLR ALSVPLSALLED A D D VR+A +RP+FDVG +GMQKELLSP G+H Sbjct: 61 RILERLRQALSVPLSALLEDEGAASDPVVGDFVRKADERPLFDVGKQGMQKELLSPPGDH 120 Query: 150 DLKMMIILIPPGAGSDEVLIGVGEKAGVVMEGSVVLNLGGSRVELKSGDSFQFASTIPHS 209 DLKMMIIL+P GAGSDEVL+GVGEKAG+V++G++VLN+G R L++GDSFQF ST+PHS Sbjct: 121 DLKMMIILLPAGAGSDEVLVGVGEKAGLVLDGAIVLNVGDRRAVLRAGDSFQFKSTVPHS 180 Query: 210 VHNESAKPARLLWVMNTQPPIVHL 233 V NE A+ AR+LWVMNTQPP++HL Sbjct: 181 VRNEGAETARVLWVMNTQPPVLHL 204 >ref|ZP_03264275.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gb|EEA04119.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 204 Score = 278 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 139/204 (68%), Positives = 170/204 (83%) Query: 30 MTQMKIKKKDPAAAPHADVGARLKALRLERGMSVNELAASAGVSVGTVSQVERNKANPSV 89 M + ++ KK A H DVG RL+ALR+ G+SVNELA AGVSVGTVSQVERNKANPSV Sbjct: 1 MQRTELSKKRAADPGHGDVGTRLRALRIAHGLSVNELAMRAGVSVGTVSQVERNKANPSV 60 Query: 90 RILERLRVALSVPLSALLEDAEATPDYDASDVVRRAKDRPVFDVGSRGMQKELLSPQGNH 149 RILERLR AL VPL+ALLE+ +A D D VR+A +RP+F+VG GMQKELLSP G+H Sbjct: 61 RILERLRQALEVPLTALLEEDDAVSDPVTGDFVRKAAERPLFEVGKNGMQKELLSPHGDH 120 Query: 150 DLKMMIILIPPGAGSDEVLIGVGEKAGVVMEGSVVLNLGGSRVELKSGDSFQFASTIPHS 209 DL+MMII++P G+GS+EVL+G+GEKAG+V+EG+VVLN+G R EL++GDSFQF ST+PHS Sbjct: 121 DLQMMIIMLPAGSGSEEVLVGIGEKAGLVLEGTVVLNVGERRSELRAGDSFQFKSTVPHS 180 Query: 210 VHNESAKPARLLWVMNTQPPIVHL 233 VHNES KPARLLW+MNTQPP++HL Sbjct: 181 VHNESKKPARLLWIMNTQPPVIHL 204 >ref|YP_555961.1| transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE36611.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 204 Score = 271 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 137/204 (67%), Positives = 168/204 (82%) Query: 30 MTQMKIKKKDPAAAPHADVGARLKALRLERGMSVNELAASAGVSVGTVSQVERNKANPSV 89 M + + KK H DVGARL+ALR+ +G+SVNELA AGVSVGTVSQVERNKANPSV Sbjct: 1 MQRTEAGKKRAVDLSHGDVGARLRALRVAQGLSVNELAMRAGVSVGTVSQVERNKANPSV 60 Query: 90 RILERLRVALSVPLSALLEDAEATPDYDASDVVRRAKDRPVFDVGSRGMQKELLSPQGNH 149 RILERLR AL VPL+ALLE+ +A D D VR+A +RP+F+VG GMQKELLSP G+H Sbjct: 61 RILERLRQALEVPLTALLEEDDAVSDPITGDFVRKAAERPLFEVGKNGMQKELLSPHGDH 120 Query: 150 DLKMMIILIPPGAGSDEVLIGVGEKAGVVMEGSVVLNLGGSRVELKSGDSFQFASTIPHS 209 DL+MMII++P G+GS+EVL+G+GEKAG+V+EG+VVLN+G R EL++GDSFQF ST+PHS Sbjct: 121 DLQMMIIMLPAGSGSEEVLVGIGEKAGLVLEGTVVLNVGDRRSELRAGDSFQFRSTVPHS 180 Query: 210 VHNESAKPARLLWVMNTQPPIVHL 233 V NES K ARLLW+MNTQPP++HL Sbjct: 181 VRNESNKTARLLWIMNTQPPVIHL 204 >ref|YP_003522350.1| PuuR [Pantoea ananatis LMG 20103] gb|ADD79222.1| PuuR [Pantoea ananatis LMG 20103] Length = 203 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 94/187 (50%), Positives = 129/187 (68%), Gaps = 1/187 (0%) Query: 42 AAPHADVGARLKALRLERGMSVNELAASAGVSVGTVSQVERNKANPSVRILERLRVALSV 101 +A ++G RLK +R R M++ ELA A VS G +SQ+ERN ANP+VR+LE+LRV L+V Sbjct: 14 SAVEINIGVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVRVLEQLRVVLNV 73 Query: 102 PLSALLEDAEATPDYDASDVVRRAKDRPVFDVGSRGMQKELLSPQGNHDLKMMIILIPPG 161 PL+A LE E A VRR ++RP F VG +G+ KE+LSP G HD++ M I IPP Sbjct: 74 PLTAFLEQHEVMRP-GAEHYVRRWRERPHFQVGKQGISKEMLSPSGEHDIQFMYISIPPR 132 Query: 162 AGSDEVLIGVGEKAGVVMEGSVVLNLGGSRVELKSGDSFQFASTIPHSVHNESAKPARLL 221 S+E+L G+GEKAGVVMEG + L + G +++GDSFQF S +PH++ N+S AR+L Sbjct: 133 TRSEEMLTGIGEKAGVVMEGRLALEVNGETTFIEAGDSFQFKSHLPHNIFNDSDTEARVL 192 Query: 222 WVMNTQP 228 W+M+ P Sbjct: 193 WIMHIPP 199 >dbj|BAK14098.1| HTH-type transcriptional regulator PuuR [Pantoea ananatis AJ13355] Length = 203 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 96/192 (50%), Positives = 131/192 (68%), Gaps = 2/192 (1%) Query: 42 AAPHADVGARLKALRLERGMSVNELAASAGVSVGTVSQVERNKANPSVRILERLRVALSV 101 +A ++G RLK +R R M++ ELA A VS G +SQ+ERN ANP+VR+LE+LRV L+V Sbjct: 14 SAVEINIGVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVRVLEQLRVVLNV 73 Query: 102 PLSALLEDAEATPDYDASDVVRRAKDRPVFDVGSRGMQKELLSPQGNHDLKMMIILIPPG 161 PL+A LE E A VRR ++RP F VG G+ KE+LSP G HD++ M I IPP Sbjct: 74 PLTAFLEQHEVMRP-GAEHYVRRWRERPHFQVGKHGISKEMLSPSGEHDIQFMYISIPPR 132 Query: 162 AGSDEVLIGVGEKAGVVMEGSVVLNLGGSRVELKSGDSFQFASTIPHSVHNESAKPARLL 221 S+E+L G+GEKAGVVMEG + L + G +++GDSFQF S +PH++ N+S AR+L Sbjct: 133 TRSEEMLTGIGEKAGVVMEGRLALEVNGETTFIEAGDSFQFKSHLPHNIFNDSDTEARVL 192 Query: 222 WVMNTQPPIVHL 233 W+M+ PP H+ Sbjct: 193 WIMHI-PPRHHI 203