BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0999.p (546 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herba... 687 0.0 ref|YP_003776428.1| methyl-accepting chemotaxis transducer trans... 483 e-134 ref|YP_523479.1| methyl-accepting chemotaxis sensory transducer ... 462 e-128 ref|ZP_04765383.1| methyl-accepting chemotaxis sensory transduce... 451 e-124 ref|YP_003278243.1| methyl-accepting chemotaxis sensory transduc... 424 e-116 >ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ62778.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 493/546 (90%), Positives = 508/546 (93%), Gaps = 5/546 (0%) Query: 1 MSYFANMKIGRRLGLGFAVILAAASVVVALSIWRLQGIAAATDEMMSEPLTKERLVSDWY 60 M YFANMKIGRRL LGFAVILAAASVVVALSIWRLQGIAAATDEMM EPLTKERLVSDWY Sbjct: 1 MRYFANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWY 60 Query: 61 RTIHTSVRRTTAIAKSADPSLASFFAADAAEASRMSTEQQKAIEALIESPEEKAVFAKLG 120 RTIHTSVRRTTAIAKS+DPSLA+FFA DAA ASRMSTEQQKAIEALIES +EKAVF KLG Sbjct: 61 RTIHTSVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLG 120 Query: 121 EVRKDYIKHRDAISKAKADGNAEEAAKILAGPFDAAAKGYLENLQQLLNLQRANIDQVAK 180 EVRKDYIK+RDAISKAKA+G EEAA+ILAGPFD A KGYL+ LQQLL LQRANIDQVA Sbjct: 121 EVRKDYIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAA 180 Query: 181 DIQQVYHESRNLMIGLAILQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDE 240 IQ VY ESRNLM+ LA LQVVLGWLFAR+LALGITRPLEQAV+VA+AVAAGDLT RIDE Sbjct: 181 HIQTVYRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDE 240 Query: 241 KLAARSDETGKLMHALHAMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAG 300 +LAAR DETGKLMHALHAMTGNLARIVGQVR GTDAI TAS EIATGNLDLSARTERQAG Sbjct: 241 RLAARGDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAG 300 Query: 301 ALEETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRK 360 ALEETASAMEELTSTVSQNA NARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRK Sbjct: 301 ALEETASAMEELTSTVSQNADNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRK 360 Query: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKIL 420 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK L Sbjct: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKAL 420 Query: 421 IDDSVAKVGSGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAITDM 480 IDDSVAKVGSGSELVTRAGSTMDEVVASVRQVA IV+EISAASSEQSDGISQVNLAITDM Sbjct: 421 IDDSVAKVGSGSELVTRAGSTMDEVVASVRQVADIVSEISAASSEQSDGISQVNLAITDM 480 Query: 481 DQTTQQNAALVEEAAAAAEAMQEQAARLSEVVSQFKVLAQDQVGYGSEEVASRPPVDITP 540 DQTTQQNAALVEEAAAAAEAMQEQAARLSEVVSQFK+L QDQ+ Y A R VDITP Sbjct: 481 DQTTQQNAALVEEAAAAAEAMQEQAARLSEVVSQFKLLGQDQIAY-----APRSAVDITP 535 Query: 541 PRPALR 546 P PALR Sbjct: 536 PLPALR 541 >ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 330/545 (60%), Positives = 409/545 (75%), Gaps = 11/545 (2%) Query: 1 MSYFANMKIGRRLGLGFAVILAAASVVVALSIWRLQGIAAATDEMMSEPLTKERLVSDWY 60 M+ NM IGRRL LGFA+IL + ++ + +WRL +A AT EMM+EPL ERL++DWY Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60 Query: 61 RTIHTSVRRTTAIAKSADPSLASFFAADAAEASRMSTEQQKAIEALIESPEEKAVFAKLG 120 + +RRT AIAKS+DP+L +FAA+ A +S+ S E QK +EAL+ +PEEKA+F K+G Sbjct: 61 TNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIG 120 Query: 121 EVRKDYIKHRDAISKAKADGNAEEAAKILAGPFDAAAKGYLENLQQLLNLQRANIDQVAK 180 E+RK Y+ RD I+KAKA GN EEA +IL F A Y + +++L++ QR +D A+ Sbjct: 121 ELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAR 180 Query: 181 DIQQVYHESRNLMIGLAILQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDE 240 +I + +SR L++ L L ++LG +FAR L LGIT+PL +AVDV++ VA GDL++ I Sbjct: 181 EIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEI-- 238 Query: 241 KLAARSDETGKLMHALHAMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAG 300 DETG+L+ +L M +L IV VRSGTD I+TASSEIA GNLDLS+RTE+QA Sbjct: 239 -AVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQAS 297 Query: 301 ALEETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRK 360 +L ETASAMEEL STV QNA NARQA+QLA SAS+VA+QGG VVSQV+ TMG+IN SSRK Sbjct: 298 SLAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRK 357 Query: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKIL 420 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIK L Sbjct: 358 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKEL 417 Query: 421 IDDSVAKVGSGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAITDM 480 I+DSV KV GS LV +AG+TM EVV+SVR+V IVAEISAAS+EQ+ GI Q+NLAIT M Sbjct: 418 INDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQM 477 Query: 481 DQTTQQNAALVEEAAAAAEAMQEQAARLSEVVSQFKVLAQDQVGYGSEEVASRPPVDITP 540 DQ TQQNAALVEEAAAAA +MQ QA RL ++VS F++ E R +D+TP Sbjct: 478 DQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRL--------SEREPLVRREIDVTP 529 Query: 541 PRPAL 545 P L Sbjct: 530 SSPVL 534 >ref|YP_523479.1| methyl-accepting chemotaxis sensory transducer [Rhodoferax ferrireducens T118] gb|ABD69948.1| methyl-accepting chemotaxis sensory transducer [Rhodoferax ferrireducens T118] Length = 583 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 307/522 (58%), Positives = 386/522 (73%), Gaps = 4/522 (0%) Query: 1 MSYFANMKIGRRLGLGFAVILAAASVVVALSIWRLQGIAAATDEMMSEPLTKERLVSDWY 60 M FA+MKIG+RLG GFAV+LA A ++ + +W+L + AT EM EPL KERL+SDW Sbjct: 1 MKIFASMKIGKRLGFGFAVVLAFAVLITGIGVWQLNALGNATREMTREPLAKERLISDWS 60 Query: 61 RTIHTSVRRTTAIAKSADPSLASFFAADAAEASRMSTEQQKAIEALIESPEEKAVFAKLG 120 R I+ +V RTTA+AKS+DPSL FF+ +AAE ++ ++ K IE L+ S EEK +F+K+ Sbjct: 61 RNINVAVIRTTAVAKSSDPSLVPFFSTNAAEITKSTSALLKQIEPLLSSQEEKDLFSKVS 120 Query: 121 EVRKDYIKHRDAISKAKADGNAEEAAKILAGPFDAAAKGYLENLQQLLNLQRANIDQVAK 180 +VRK Y+ RD ++K KADG A+EA ++L + AA Y++ + + L LQR N+D A Sbjct: 121 DVRKAYLSSRDQVTKLKADGQADEANRLLESTYIPAADNYMKLVSEFLGLQRKNLDAKAV 180 Query: 181 DIQQVYHESRNLMIGLAILQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDE 240 +I + SRN ++ LA L + G + A L +GIT PL AV VA+ VA GDL T I Sbjct: 181 EISGIETTSRNYLVALAALVLTFGVICAWLLTVGITGPLTNAVAVARRVADGDLATDIQT 240 Query: 241 KLAARSDETGKLMHALHAMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAG 300 + DET +L+ AL AM NLARIVG VR G++ + TAS+EIA GN DLSARTE+QA Sbjct: 241 E---GKDETAQLLQALSAMKDNLARIVGNVRQGSEGVATASAEIAQGNNDLSARTEQQAS 297 Query: 301 ALEETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRK 360 ALEETA++MEEL++TV QNA NARQANQLA SAS+VA +GGEVVS+V+ TM IN+SS+K Sbjct: 298 ALEETAASMEELSATVRQNADNARQANQLAQSASTVAIKGGEVVSRVVETMKGINDSSKK 357 Query: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKIL 420 I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA RSA AAKEIK L Sbjct: 358 ISDIIQVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSADAAKEIKGL 417 Query: 421 IDDSVAKVGSGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAITDM 480 I+DSV +V GS LV +AG TM EVV+S+R+V I+ EISAAS+EQS G++QV+ A+T M Sbjct: 418 INDSVQRVEQGSTLVDQAGVTMTEVVSSIRRVTDIMGEISAASTEQSQGVAQVSEAVTQM 477 Query: 481 DQTTQQNAALVEEAAAAAEAMQEQAARLSEVVSQFKVLAQDQ 522 DQ TQQNAALVEE AAAA +++ QA L VS FK L+Q Q Sbjct: 478 DQVTQQNAALVEEMAAAASSLKSQAQELVGTVSVFK-LSQSQ 518 >ref|ZP_04765383.1| methyl-accepting chemotaxis sensory transducer [Acidovorax delafieldii 2AN] gb|EER57813.1| methyl-accepting chemotaxis sensory transducer [Acidovorax delafieldii 2AN] Length = 527 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 306/515 (59%), Positives = 386/515 (74%), Gaps = 3/515 (0%) Query: 6 NMKIGRRLGLGFAVILAAASVVVALSIWRLQGIAAATDEMMSEPLTKERLVSDWYRTIHT 65 N+KIG RLG GFA++LA ++ +WRLQ +A AT++M +PL ER++SDWYR +++ Sbjct: 3 NLKIGTRLGGGFALVLALMVLMTLFGLWRLQTVAQATNDMTQQPLAMERMISDWYRYVYS 62 Query: 66 SVRRTTAIAKSADPSLASFFAADAAEASRMSTEQQKAIEALIESPEEKAVFAKLGEVRKD 125 RRTTAI KS DPSLA FFA DAA ++R S + Q IE L+ +P EK ++ + + R Sbjct: 63 GARRTTAIVKSTDPSLAGFFAEDAAMSTRESGKLQDRIEPLLSNPAEKELWVTIKKARVT 122 Query: 126 YIKHRDAISKAKADGNAEEAAKILAGPFDAAAKGYLENLQQLLNLQRANIDQVAKDIQQV 185 Y+ RD KAKADG EEA + L + AA+ Y+ +QQLL+LQRA+ID AKDIQ V Sbjct: 123 YLSSRDQAVKAKADGQLEEAERTLTQVYLPAAEKYMALIQQLLDLQRASIDATAKDIQGV 182 Query: 186 YHESRNLMIGLAILQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDEKLAAR 245 Y ESR ++ L +L V +G + A L GITRPL +AV VA+AVA DLTT ++ Sbjct: 183 YAESRMWLMLLCVLAVAVGGVCAWWLTHGITRPLSEAVRVARAVADNDLTTTVE---VHS 239 Query: 246 SDETGKLMHALHAMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAGALEET 305 DETG+LM AL M +LA++VG+VR+GT+ I TAS++I GN DLS+RTE+QA +LEET Sbjct: 240 RDETGQLMEALQHMNTSLAQVVGRVRAGTEGIATASNQIDAGNQDLSSRTEQQASSLEET 299 Query: 306 ASAMEELTSTVSQNASNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRKIVDII 365 A++MEELTSTV QNA NARQANQLA+SAS VA QGG+VV+ V+ TM +IN SSRKI DII Sbjct: 300 AASMEELTSTVRQNADNARQANQLASSASQVAMQGGQVVAHVVDTMSAINASSRKIADII 359 Query: 366 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKILIDDSV 425 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAK+IK LID+SV Sbjct: 360 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDIKTLIDNSV 419 Query: 426 AKVGSGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAITDMDQTTQ 485 KV G++ V AG TMD +V SV++V I+AEI+AAS EQS GI QV+ AI+ MDQ TQ Sbjct: 420 GKVDEGTQQVAEAGKTMDAIVDSVKRVTDIMAEIAAASQEQSSGIDQVHQAISQMDQVTQ 479 Query: 486 QNAALVEEAAAAAEAMQEQAARLSEVVSQFKVLAQ 520 QNAALVEEAAAA +++ QAA+L++ VS F++ Q Sbjct: 480 QNAALVEEAAAATGSLKAQAAQLAQAVSVFRIAGQ 514 >ref|YP_003278243.1| methyl-accepting chemotaxis sensory transducer [Comamonas testosteroni CNB-2] gb|ACY32947.1| methyl-accepting chemotaxis sensory transducer [Comamonas testosteroni CNB-2] Length = 529 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 303/514 (58%), Positives = 378/514 (73%), Gaps = 3/514 (0%) Query: 4 FANMKIGRRLGLGFAVILAAASVVVALSIWRLQGIAAATDEMMSEPLTKERLVSDWYRTI 63 + IG RLGLGFAV+LA A V+ + IW+L + AT +MM EPLTKERL+SDW + Sbjct: 16 LTKLNIGARLGLGFAVVLAFAVVITVIGIWQLHSVGKATQQMMQEPLTKERLISDWNSNV 75 Query: 64 HTSVRRTTAIAKSADPSLASFFAADAAEASRMSTEQQKAIEALIESPEEKAVFAKLGEVR 123 +V RTTAIAKS+D SL F AADAA ++ + K IE LI P E+ + K+ +VR Sbjct: 76 SVAVARTTAIAKSSDASLVQFLAADAAATTKSTANVLKQIEPLITQPAEREILDKIMQVR 135 Query: 124 KDYIKHRDAISKAKADGNAEEAAKILAGPFDAAAKGYLENLQQLLNLQRANIDQVAKDIQ 183 K YI RD +S+ KADG AEEA L + AA+GYL+ L +LLNLQRA++D A +++ Sbjct: 136 KTYIASRDKVSQLKADGMAEEAESTLINSYVPAAQGYLKLLGELLNLQRASLDAKAAEVE 195 Query: 184 QVYHESRNLMIGLAILQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDEKLA 243 Q+ SR + LA+L + +G + A L GIT PL+ AV VA+ VA GDLT RI Sbjct: 196 QIESSSRTYFLVLALLALAIGTVSAWRLTQGITAPLKHAVSVARRVADGDLTARIH---V 252 Query: 244 ARSDETGKLMHALHAMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAGALE 303 + SDETG+LM ALH M +L R+VGQVR GTD+I TAS +IA GN DLSARTE QA +L+ Sbjct: 253 SSSDETGQLMQALHDMNTSLDRLVGQVRQGTDSIATASGQIAAGNHDLSARTEEQASSLQ 312 Query: 304 ETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRKIVD 363 +TA++ME+LTSTV QNA NA QANQLA SAS VA +GG VVSQV+ TMG+I++SSRKI D Sbjct: 313 QTAASMEQLTSTVKQNADNASQANQLALSASDVAVKGGMVVSQVVETMGAISQSSRKISD 372 Query: 364 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKILIDD 423 II VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA RSA AAKEIK LI Sbjct: 373 IIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSAEAAKEIKQLIQA 432 Query: 424 SVAKVGSGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAITDMDQT 483 SV KV GS V++AG TMDE+V+SV++V I+ EI+AAS EQ+ GI Q+N A+ +MD Sbjct: 433 SVTKVEEGSAQVSQAGQTMDEIVSSVQRVTDIMGEITAASHEQTSGIEQINRAVAEMDLV 492 Query: 484 TQQNAALVEEAAAAAEAMQEQAARLSEVVSQFKV 517 TQQNAALVEE+ AAA++MQ+Q + LS++VS F++ Sbjct: 493 TQQNAALVEESTAAAQSMQQQTSDLSQMVSVFRL 526