BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0988.p (583 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774676.1| methyl-accepting chemotaxis transducer trans... 700 0.0 ref|YP_442991.1| methyl-accepting chemotaxis protein [Burkholder... 412 e-113 ref|ZP_02886327.1| methyl-accepting chemotaxis sensory transduce... 402 e-109 ref|YP_001764883.1| methyl-accepting chemotaxis sensory transduc... 391 e-106 ref|YP_003907110.1| methyl-accepting chemotaxis sensory transduc... 385 e-104 >ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62768.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 472/596 (79%), Positives = 515/596 (86%), Gaps = 13/596 (2%) Query: 1 MSIKNLSIKAQLAIAVLVLSLLLLALGLSGLLGMSAAVSINRQLSEERIPKTVAADNTLI 60 MSIKNLSIKAQLAIA+LVL+ LL+A+G SGLLGMSAAVSIN QLS+ER+PKTVAADNTLI Sbjct: 1 MSIKNLSIKAQLAIAILVLAALLVAIGASGLLGMSAAVSINAQLSQERLPKTVAADNTLI 60 Query: 61 WIGRQRTSLDQAAMSLDAAWTERMFVMEANARKEALQWWAKYSALPQTDEGKVMLKKVSE 120 WIGRQRTSLDQAA++ D AW ERM+ M+ANARKEALQWW KY+ALPQT+EG+V++KKVS+ Sbjct: 61 WIGRQRTSLDQAALTNDPAWAERMYGMDANARKEALQWWGKYTALPQTEEGRVLVKKVSD 120 Query: 121 GLAATQVELDKFIAAIKSGDRQAIADQARKVGSVYTAMQLDGQALNKYETEQAAESLAAS 180 G+ T+ EL +F IK+GDRQAIADQARKVG++YTAMQLDGQAL+KYETEQAA+S AS Sbjct: 121 GIDKTEQELTRFAEVIKAGDRQAIADQARKVGTIYTAMQLDGQALSKYETEQAAQSAGAS 180 Query: 181 NARYQASRMFSIAAVIGGLLLAFFSWWSLRRAIGEPMQRALRHFDAIANGDLTQPVHVHS 240 ARY+ASR FSI A++ GLLLAF+SWWSLRRAIGEPMQRALRHFDAIA+GDLT+ VHVHS Sbjct: 181 MARYEASRNFSIVAIVAGLLLAFYSWWSLRRAIGEPMQRALRHFDAIASGDLTEAVHVHS 240 Query: 241 KNEMGQLLQGLSRMQESLSRTVRAVRGGSDAIATATREIASGNLDLSARTEQQAASLEET 300 +NEMGQLL+GL RMQESLSRTV+AVR GSDAI+TATREIASGNLDLS+RTEQQAASLEET Sbjct: 241 RNEMGQLLEGLKRMQESLSRTVQAVRSGSDAISTATREIASGNLDLSSRTEQQAASLEET 300 Query: 301 ASSMEELTGTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIRESSARITDIV 360 ASSMEELT TVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIR SSA+ITDIV Sbjct: 301 ASSMEELTSTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIRASSAKITDIV 360 Query: 361 SIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSV 420 SIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSV Sbjct: 361 SIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSV 420 Query: 421 ERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQVSRAVTQMDEATQ 480 +RVQAGSELVGQAGDTMSDVI AVQRVTDIMSEISAASNEQSAGIDQVS AVTQMDEATQ Sbjct: 421 DRVQAGSELVGQAGDTMSDVINAVQRVTDIMSEISAASNEQSAGIDQVSHAVTQMDEATQ 480 Query: 481 QNAALVEQASAAAKSLEQQAQALMQEVAIFRVGQGDVVSLRPQVNAQQPAPKAAATPAKP 540 QNAALVEQASAAAKSLEQQAQALMQEVAIFRV P A + K AA PA Sbjct: 481 QNAALVEQASAAAKSLEQQAQALMQEVAIFRVNGAGPTVKPPAAAASRATVKPAAKPAMK 540 Query: 541 VAATKPAVPKAVPALKRPALPAAASAKPASR-------------LPAGDDGDWETF 583 A+ PA P A P A + K + +PAGD+GDWETF Sbjct: 541 PASAAPAAPATPTAPAAPVAKVAPAVKRPALPAAPAAAKPAGRGVPAGDEGDWETF 596 >ref|YP_442991.1| methyl-accepting chemotaxis protein [Burkholderia thailandensis E264] ref|ZP_05587479.1| methyl-accepting chemotaxis protein [Burkholderia thailandensis E264] gb|ABC37193.1| methyl-accepting chemotaxis protein [Burkholderia thailandensis E264] Length = 616 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 285/516 (55%), Positives = 377/516 (73%) Query: 1 MSIKNLSIKAQLAIAVLVLSLLLLALGLSGLLGMSAAVSINRQLSEERIPKTVAADNTLI 60 M +KNLSI+ +LA+ + +LS+LL +G GL GMS A N Q S ++P T+ + + Sbjct: 1 MLLKNLSIRTRLAVTMTLLSVLLCVVGALGLFGMSRANDANEQTSSNQLPSTIDVASAEL 60 Query: 61 WIGRQRTSLDQAAMSLDAAWTERMFVMEANARKEALQWWAKYSALPQTDEGKVMLKKVSE 120 + R+R LD+AA+ + R + WW KY LP+ + + + V+ Sbjct: 61 FAARERLVLDRAALLAGTPDAAPTIERARHMRGVSDSWWKKYLDLPRNGQEDRLAQDVAA 120 Query: 121 GLAATQVELDKFIAAIKSGDRQAIADQARKVGSVYTAMQLDGQALNKYETEQAAESLAAS 180 Q ELD F+ I + DR I + A+++ +V+ L +AL ++ +QA+ + + + Sbjct: 121 KRQVLQRELDGFVELINANDRDRIIESAKRMQNVFNDFALASEALRAFQLKQASVNFSDA 180 Query: 181 NARYQASRMFSIAAVIGGLLLAFFSWWSLRRAIGEPMQRALRHFDAIANGDLTQPVHVHS 240 + Y ASR+ SIAA++ GL ++ + + SLR AI P+ AL HFDAIA G+L +P+ V Sbjct: 181 QSVYGASRIASIAALVLGLAISLYCFLSLRAAIARPLADALGHFDAIAAGELRRPIVVAR 240 Query: 241 KNEMGQLLQGLSRMQESLSRTVRAVRGGSDAIATATREIASGNLDLSARTEQQAASLEET 300 ++EMG LL+GL++MQ SL+ TVR+VR GS++IATA R+IA+GN+DLS+RTEQQAA+LEET Sbjct: 241 RDEMGLLLEGLAKMQASLADTVRSVRVGSESIATAARQIAAGNIDLSSRTEQQAAALEET 300 Query: 301 ASSMEELTGTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIRESSARITDIV 360 ASSMEELTGTV+ NADNARQA+ LA +AS IA GNAVVG+VV TM +I +SSA+I DI+ Sbjct: 301 ASSMEELTGTVQRNADNARQASALAASASEIANKGNAVVGQVVGTMGDINQSSAKIADII 360 Query: 361 SIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSV 420 +II+GIAFQTNILALNAAVEAARAGE+GRGFAVVA EVR+LAQRSS+AAKEIKELI SV Sbjct: 361 TIIEGIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRSLAQRSSTAAKEIKELIDTSV 420 Query: 421 ERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQVSRAVTQMDEATQ 480 ERV+ GS LV AG TMS+VI AVQRVTDIM EI+AAS+EQS GIDQVSRAV+QMDE TQ Sbjct: 421 ERVRTGSSLVDDAGRTMSEVIGAVQRVTDIMGEIAAASDEQSTGIDQVSRAVSQMDEVTQ 480 Query: 481 QNAALVEQASAAAKSLEQQAQALMQEVAIFRVGQGD 516 QNAALVE+A+AAA+SL++QA L + V++FRV GD Sbjct: 481 QNAALVEEAAAAAQSLDEQAARLRETVSVFRVDDGD 516 >ref|ZP_02886327.1| methyl-accepting chemotaxis sensory transducer [Burkholderia graminis C4D1M] gb|EDT07981.1| methyl-accepting chemotaxis sensory transducer [Burkholderia graminis C4D1M] Length = 610 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 291/549 (53%), Positives = 372/549 (67%), Gaps = 7/549 (1%) Query: 4 KNLSIKAQLAIAVLVLSLLLLALGLSGLLGMSAAVSINRQLSEERIPKTVAADNTLIWIG 63 K +SIKA++ + + L+ LLL +G GL GMS + ++ +P V N ++ Sbjct: 4 KGISIKARIGLTMAFLAALLLGIGAFGLFGMSRSNHAYQETFTNSMPSAVNIGNAELYAA 63 Query: 64 RQRTSLDQAAMSLDAAWTERMFVMEANARKEALQWWAKYSALPQTDEGKVMLKKVSEGLA 123 R+R +LD+AA + + R + WW KY LP+ + + + V Sbjct: 64 RERLALDRAAFMIGTPEGAPTLERARSMRTTSDMWWKKYMDLPRDADEDRLARDVVSKRD 123 Query: 124 ATQVELDKFIAAIKSGDRQAIADQARKVGSVYTAMQLDGQALNKYETEQAAESLAASNAR 183 A D F A + + D+ + D A+ + S Y + AL KY+ E A + + Sbjct: 124 ALHQRADAFAAVVAASDQSKLIDGAKLLQSAYNELATSDDALRKYQFELAQAGYDDAQSN 183 Query: 184 YQASRMFSIAAVIGGLLLAFFSWWSLRRAIGEPMQRALRHFDAIANGDLTQPVHVHSKNE 243 + RM SI A+I G+L A S+ +L RAI P+ AL HFDAIA GDL + V V S++E Sbjct: 184 FHMFRMVSIGALIAGILAALLSYVALSRAIARPLAEALDHFDAIAAGDLRRQVVVSSRDE 243 Query: 244 MGQLLQGLSRMQESLSRTVRAVRGGSDAIATATREIASGNLDLSARTEQQAASLEETASS 303 MGQ+L+G+S+MQ SL TVRAVRGGS++IATATREIA+GN+DLS+RTE+QA++L+ETASS Sbjct: 244 MGQILEGISKMQRSLIETVRAVRGGSESIATATREIAAGNIDLSSRTEEQASALQETASS 303 Query: 304 MEELTGTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIRESSARITDIVSII 363 MEELTGTVK NADNARQA+ LA NAS IA G+AVVG+VV TM EI +SSA+I DI+SII Sbjct: 304 MEELTGTVKQNADNARQASALAANASEIANKGSAVVGQVVGTMGEINQSSAKIADIISII 363 Query: 364 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSVERV 423 +GIAFQTNILALNAAVEAARAGE+GRGFAVVA EVR+LAQRSS+AAKEIKELI SV+RV Sbjct: 364 EGIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRSLAQRSSAAAKEIKELIDTSVDRV 423 Query: 424 QAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQVSRAVTQMDEATQQNA 483 Q+GS LV QAG TM+++I AVQRVTDIM EI+AAS EQS+GIDQV+RAVTQMDE TQQNA Sbjct: 424 QSGSALVDQAGRTMNEIIGAVQRVTDIMGEIAAASEEQSSGIDQVARAVTQMDEVTQQNA 483 Query: 484 ALVEQASAAAKSLEQQAQALMQEVAIFRVGQGDVVSLRPQVNAQQPAPKAAATPAKPVAA 543 ALVE+A+AAA SLE QA L VA+F++ VS K TPA+ V+A Sbjct: 484 ALVEEAAAAASSLEDQADKLRGAVAVFQLSDEGKVS-------GGSLAKHTPTPARAVSA 536 Query: 544 TKPAVPKAV 552 AV + V Sbjct: 537 APRAVSRTV 545 >ref|YP_001764883.1| methyl-accepting chemotaxis sensory transducer [Burkholderia cenocepacia MC0-3] gb|ACA90761.1| methyl-accepting chemotaxis sensory transducer [Burkholderia cenocepacia MC0-3] Length = 588 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 295/588 (50%), Positives = 389/588 (66%), Gaps = 5/588 (0%) Query: 1 MSIKNLSIKAQLAIAVLVLSLLLLALGLSGLLGMSAAVSINRQLSEERIPKTVAADNTLI 60 M +NL+I+A++ + + L++LL G+ GL GM+ A R++ ++P V + Sbjct: 1 MVFRNLTIRARIGLTMAFLAVLLGVTGVLGLYGMTRANDSTREIFTNQMPSAVNVAMAEM 60 Query: 61 WIGRQRTSLDQAAMSLDAAWTERMFVMEANARKEALQWWAKYSALPQTDEGKVMLKKVSE 120 + R+R +LD+AA+ + + R ++ WW KY ALP+ E + + V+ Sbjct: 61 FAARERLALDRAALLVGTPDSTAAIERSRAMRGQSDAWWQKYLALPRGTEEDRLAQDVAA 120 Query: 121 GLAATQVELDKFIAAIKSGDRQAIADQARKVGSVYTAMQLDGQALNKYETEQAAESLAAS 180 Q D F AI +GD I A+++ + Y + + G+AL ++ A + Sbjct: 121 RRKVLQDSCDAFATAIGTGDHDQIGGGAKQLQARYNDLAVAGEALRTFQFTDAQTRFDQA 180 Query: 181 NARYQASRMFSIAAVIGGLLLAFFSWWSLRRAIGEPMQRALRHFDAIANGDLTQPVHVHS 240 + ++ R+ SI ++ G+ A SW +L RAIG P+ AL HFDAIA GDL +P+ V Sbjct: 181 ESVFETMRVLSIVVLLAGVGAAVLSWLTLSRAIGRPIADALSHFDAIAAGDLRRPIVVDR 240 Query: 241 KNEMGQLLQGLSRMQESLSRTVRAVRGGSDAIATATREIASGNLDLSARTEQQAASLEET 300 ++EMGQ+L+GL+RMQ L TVR VRGGS++IATA R+IA+GN+DLS+RTE+QAA+L+ET Sbjct: 241 RDEMGQMLEGLARMQRGLVDTVRTVRGGSESIATAARQIAAGNIDLSSRTEEQAAALQET 300 Query: 301 ASSMEELTGTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIRESSARITDIV 360 ASSME+LTGTVK NADNARQA++LA NAS IA GN VVG+VV TM EI +SSA+I DI+ Sbjct: 301 ASSMEQLTGTVKQNADNARQASSLAANASDIANKGNTVVGQVVGTMGEINDSSAKIADII 360 Query: 361 SIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSV 420 +II+GIAFQTNILALNAAVEAARAGE+GRGFAVVA EVR+LAQRSSSAAKEIK LI SV Sbjct: 361 AIIEGIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRSLAQRSSSAAKEIKALIDASV 420 Query: 421 ERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQVSRAVTQMDEATQ 480 ER++ GS LV +AG TMSDVI AVQRVTDIM EI+AAS EQS+GIDQV+RAV QMDE TQ Sbjct: 421 ERIRTGSTLVDEAGRTMSDVIGAVQRVTDIMGEIAAASEEQSSGIDQVARAVAQMDEVTQ 480 Query: 481 QNAALVEQASAAAKSLEQQAQALMQEVAIFRVGQ-----GDVVSLRPQVNAQQPAPKAAA 535 QNAALVE+A+AAA+SLE+QA L + A+F++ G VV++ AP AA Sbjct: 481 QNAALVEEAAAAAQSLEEQAARLRETAAVFQLDDEATRAGTVVAVARHAPRAPAAPAAAP 540 Query: 536 TPAKPVAATKPAVPKAVPALKRPALPAAASAKPASRLPAGDDGDWETF 583 + A PK PA PAA SA P + DWETF Sbjct: 541 AAPAAACVERDAAPKRAPAATPARKPAAVSAAPTPAVATAGGDDWETF 588 >ref|YP_003907110.1| methyl-accepting chemotaxis sensory transducer [Burkholderia sp. CCGE1003] gb|ADN57819.1| methyl-accepting chemotaxis sensory transducer [Burkholderia sp. CCGE1003] Length = 612 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 303/611 (49%), Positives = 392/611 (64%), Gaps = 32/611 (5%) Query: 4 KNLSIKAQLAIAVLVLSLLLLALGLSGLLGMSAAVSINRQLSEERIPKTVAADNTLIWIG 63 K +SIKA++ + ++ L+ LL+ +G GL GMS + ++ +P V N ++ Sbjct: 3 KGISIKARIGLTMVFLAALLVGIGAFGLFGMSRSNDAYQETFTNSMPSAVDIGNAELFAA 62 Query: 64 RQRTSLDQAAMSLDAAWTERMFVMEANARKEALQWWAKYSALPQTDEGKVMLKKVSEGLA 123 R+R +LD+AA + + R + +WW KY LP+ E + ++V Sbjct: 63 RERLALDRAAFMMGTPESAPTLERARTMRATSDKWWQKYMDLPRGPEEDRLAREVIVKRE 122 Query: 124 ATQVELDKFIAAIKSGDRQAIADQARKVGSVYTAMQLDGQALNKYETEQAAESLAASNAR 183 A + D F A + +G++ + D A+++ Y + AL K++ + A A Sbjct: 123 ALHQQADAFAAVVAAGEQGKLVDGAKRMQVAYNELAGADDALRKFQFDAAKAGYDDVQAS 182 Query: 184 YQASRMFSIAAVIGGLLLAFFSWWSLRRAIGEPMQRALRHFDAIANGDLTQPVHVHSKNE 243 + RM SI A++ G L A S+ +L RAI P+ AL HFDAIA GDL + V V S++E Sbjct: 183 FHQFRMVSIGALVAGALAALLSYMALSRAIARPLSEALVHFDAIAAGDLRRQVAVTSRDE 242 Query: 244 MGQLLQGLSRMQESLSRTVRAVRGGSDAIATATREIASGNLDLSARTEQQAASLEETASS 303 MGQ+L+G+++MQ SL TVRAVRGGS++IATATREIA+GN+DLS+RTE+QA++L++TASS Sbjct: 243 MGQILEGIAKMQRSLIETVRAVRGGSESIATATREIAAGNIDLSSRTEEQASALQQTASS 302 Query: 304 MEELTGTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIRESSARITDIVSII 363 MEELTGTVK NADNARQA+ LA NAS IA G+AVVG+VV TM EI +SSA+I DI+SII Sbjct: 303 MEELTGTVKQNADNARQASALAANASEIANKGSAVVGQVVGTMGEINQSSAKIADIISII 362 Query: 364 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSVERV 423 +GIAFQTNILALNAAVEAARAGE GRGFAVVA EVR+LAQRSS+AAKEIKELI SV+RV Sbjct: 363 EGIAFQTNILALNAAVEAARAGEDGRGFAVVAGEVRSLAQRSSAAAKEIKELIDTSVDRV 422 Query: 424 QAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQVSRAVTQMDEATQQNA 483 Q+GS LV +AG TM ++I AVQRVTDIM EI+AAS EQS GIDQV+RAVTQMDE TQQNA Sbjct: 423 QSGSALVDEAGRTMGEIISAVQRVTDIMGEIAAASEEQSGGIDQVARAVTQMDEVTQQNA 482 Query: 484 ALVEQASAAAKSLEQQAQALMQEVAIFRVGQGDV----------VSLRPQVNAQQPAPKA 533 ALVE+A+AAA SLE QA L Q VA+F++G V LR +PA +A Sbjct: 483 ALVEEAAAAASSLEDQADKLRQAVAVFQLGDDAGKASASAAAKHVPLRAASAVARPASRA 542 Query: 534 AATPAK---------------------PVAATKPAVPKAVPALKRPALPAAASAKPASRL 572 A AA PA A A K +P A+AKPA+ Sbjct: 543 AGRAGSAPPAAAAVAAQPVTAGHAPAAAAAAASPAPVAAAAAAKSNPVP-RATAKPAAVA 601 Query: 573 PAGDDGDWETF 583 G D DWETF Sbjct: 602 SVGGDQDWETF 612