BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0987.p (653 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774675.1| methyl-accepting chemotaxis I (serine chemor... 721 0.0 ref|YP_315378.1| methyl-accepting chemotaxis sensory transducer ... 361 3e-97 ref|YP_314418.1| chemotaxis sensory transducer [Thiobacillus den... 357 3e-96 ref|ZP_08404611.1| methyl-accepting chemotaxis sensory transduce... 357 4e-96 ref|ZP_04764380.1| methyl-accepting chemotaxis sensory transduce... 352 2e-94 >ref|YP_003774675.1| methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62767.1| methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 574 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 498/586 (84%), Positives = 525/586 (89%), Gaps = 12/586 (2%) Query: 68 MIQHLKIGSRLAFGFCLILLLATAILLIGLWRMAELEASSEYVIDQKVAAMTSAMNMREA 127 MIQ LKIGSRLAFGFCLILLLATAILLIGLWRMAELEA+SEYVID+KVAAMT+A+NMREA Sbjct: 1 MIQRLKIGSRLAFGFCLILLLATAILLIGLWRMAELEAASEYVIDEKVAAMTAALNMREA 60 Query: 128 GSQLALALRKVVTPTDAAEGKAEDAHLGEILKAYAGFEKQITGLSADGRGKDLLAATSGE 187 GSQLALALRKVVTPTDAAEGKAEDAHL +IL+AYAGFEKQIT LS GRGK+LL A SG+ Sbjct: 61 GSQLALALRKVVTPTDAAEGKAEDAHLSKILQAYAGFEKQITELSPAGRGKELLTAASGQ 120 Query: 188 SKKLFPLVEQIRQQVASNNYFDAAQQLKSDFLPAHEKWMASVAALAAFQQEDMKQAHADA 247 SK+LFP+VE IRQQVASNNYFDAAQ LKSDFLPAH+KWMASV ALAAFQQEDMK AHA+A Sbjct: 121 SKQLFPIVETIRQQVASNNYFDAAQLLKSDFLPAHDKWMASVGALAAFQQEDMKAAHAEA 180 Query: 248 KDSYRKAQIGMLAMGVLTLGLGFFFTFVITRSIVNPLKRAGSIAETISRGDLTHDFHDQG 307 KDSYRKAQIGML MGVLTLGLGFFFTFVITRSIV PLKRAG+IAETISRGDLT DFHD G Sbjct: 181 KDSYRKAQIGMLLMGVLTLGLGFFFTFVITRSIVGPLKRAGNIAETISRGDLTQDFHDHG 240 Query: 308 RDEAAHLVNALDAMQGNLATTLNEVKESAAVIAVASHEIARGNVDLSNRTESQASSLEET 367 RDEAA +VNAL+AMQ NLA TLNEVKESAAVIAVASHEIARGNVDLSNRTESQASSLEET Sbjct: 241 RDEAATMVNALEAMQTNLAATLNEVKESAAVIAVASHEIARGNVDLSNRTESQASSLEET 300 Query: 368 ASSMEQLTSTVQQNAANAQQANQLVLSASDYATKGGRVVGDVVHTMGSIKESSGKIVDII 427 ASSMEQLTSTVQQNA NA+QANQLV+SASDYATKGGRVVGDVV TMGSIKESS KIVDII Sbjct: 301 ASSMEQLTSTVQQNAENARQANQLVVSASDYATKGGRVVGDVVATMGSIKESSSKIVDII 360 Query: 428 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELISDSV 487 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LISDSV Sbjct: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKGLISDSV 420 Query: 488 DKVDAGGKLVDEAGATMSEIVASVKHVADIMGEITAASQEQSAGIAEVNNAIAQIDEITQ 547 +KVDAGGKLVDEAGATMSEIV SVKHVADIMGEITAASQEQSAGIAEVN+AI QIDEITQ Sbjct: 421 EKVDAGGKLVDEAGATMSEIVTSVKHVADIMGEITAASQEQSAGIAEVNHAITQIDEITQ 480 Query: 548 QNAALVEQAAAAAESLQEQSDVLARAVAVFKLKTAAQARPQSQPQHPAHKQSAAPVMNSP 607 QNAALVEQAAAAAESLQEQ+DVLARAVAVF+LKTA Q + PV P Sbjct: 481 QNAALVEQAAAAAESLQEQADVLARAVAVFRLKTA---------QAQGSIPTPPPVPAPP 531 Query: 608 AAARTVNPPPAVAAARKPAVASLPPASGASKGKPATAARDDDFEEF 653 A RTVN P AV A R VASL PA+ +K KPA RDD+FEEF Sbjct: 532 APLRTVNTPAAVTATR--PVASL-PAAAPAKRKPAALTRDDEFEEF 574 >ref|YP_315378.1| methyl-accepting chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] gb|AAZ97573.1| chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] Length = 559 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 263/545 (48%), Positives = 347/545 (63%), Gaps = 8/545 (1%) Query: 72 LKIGSRLAFGFCLILLLATAILLIGLWRMAELEASSEYVIDQKVAAMTSAMNMREAGSQL 131 +KIG+RL GF +LLL + +IG+WR+ + ++ ++ + M A + E S + Sbjct: 1 MKIGARLGLGFASVLLLLVVVAVIGVWRLQTVGMMTDSLVKNE---MHKARIINEWESII 57 Query: 132 ALALRKVVTPTDAAEGKAEDAHLGEILKAYAG---FEKQITGLSADGRGKDLLAATSGES 188 + + + E + A G +KQ+ L D + L AA + + Sbjct: 58 NANAVRALAAAKTNNPETEKFFVDASAAASKGGIALQKQLESLLTDAESRALFAAIADKR 117 Query: 189 KKLFPLVEQIRQQVASNNYFDAAQQLKSDFLPAHEKWMASVAALAAFQQEDMKQAHADAK 248 + ++ A+ N A + + D P + ++ S+ LA +Q++ + + Sbjct: 118 SAYLAARDAALKEKAAGNVLGAKKFVDEDMKPRLDAYLESLHDLARYQKQAIDATAGNIH 177 Query: 249 DSYRKAQIGMLAMGVLTLGLGFFFTFVITRSIVNPLKRAGSIAETISRGDLTHDFHDQGR 308 Y ++ ++ + ++ L +G F F ITRSI P+ +A +A+T++ GDLT +G+ Sbjct: 178 RQYESGRMLLIGLSIVALMMGIGFAFWITRSITRPMNQAVKVAQTVAAGDLTSRIEVEGK 237 Query: 309 DEAAHLVNALDAMQGNLATTLNEVKESAAVIAVASHEIARGNVDLSNRTESQASSLEETA 368 DE L+ AL M +L + +V+ IA AS EIA GN+DLS+RTE QASSLEETA Sbjct: 238 DETGRLLQALKDMNDSLVKIVGQVRLGTDAIATASSEIATGNLDLSSRTEEQASSLEETA 297 Query: 369 SSMEQLTSTVQQNAANAQQANQLVLSASDYATKGGRVVGDVVHTMGSIKESSGKIVDIIS 428 SSMEQLTSTV+QNA +A+QANQ+ +SAS+ A KGG VV VV TMGSI ESS KIVDII+ Sbjct: 298 SSMEQLTSTVKQNADHARQANQMAVSASEVAVKGGAVVAQVVDTMGSINESSRKIVDIIA 357 Query: 429 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELISDSVD 488 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI DSV+ Sbjct: 358 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKTLIGDSVE 417 Query: 489 KVDAGGKLVDEAGATMSEIVASVKHVADIMGEITAASQEQSAGIAEVNNAIAQIDEITQQ 548 K D G KLV +AGATM EIVASVK V DIMGEITAASQEQSAGI +VN AIAQ+DE+TQQ Sbjct: 418 KADIGSKLVGQAGATMDEIVASVKRVTDIMGEITAASQEQSAGIEQVNQAIAQMDEVTQQ 477 Query: 549 NAALVEQAAAAAESLQEQSDVLARAVAVFKLKTAAQARPQSQPQHPAHKQSAAPVMNSPA 608 NAALVE+AAAAA S+Q+Q+ LA AV+VF+L RP+ + + +A P A Sbjct: 478 NAALVEEAAAAASSMQDQAANLAEAVSVFRLAGVNTQRPEQLTSN--ERIAALPARTHTA 535 Query: 609 AARTV 613 AA V Sbjct: 536 AAPVV 540 >ref|YP_314418.1| chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] gb|AAZ96613.1| chemotaxis sensory transducer [Thiobacillus denitrificans ATCC 25259] Length = 586 Score = 357 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 270/521 (51%), Positives = 347/521 (66%), Gaps = 9/521 (1%) Query: 63 RKRHAMIQHLKIGSRLAFGFCLILLLATAILLIGLWRMAELEASSEYVIDQKVAAMTSAM 122 R R + ++KIG+RL GF +LLL A+ +GL +++++ + V ++ + Sbjct: 31 RGRTMTLVNMKIGTRLGTGFGAVLLLTLAVAGLGLAYLSQIQRHVDDVAGSRMGKIKLVN 90 Query: 123 NMREAGSQLALALRKVVTPTD----AAEGKAEDAHLGEILKAYAGFEKQITGLSADGRGK 178 MR+A A+A+R +V TD A E + AH A A + A+ Sbjct: 91 GMRDAMQSGAVAVRNLVLLTDEGAMAEEAQRFLAHRARYADAAAKLATAVRS-PAETSVY 149 Query: 179 DLLAATSGESKKLFPLVEQIRQQVASNNYFDAAQQLKSDFLPAHEKWMASVAALAAFQQE 238 D +AA ++ P ++++R+ A N +A + L + P ++W+A++ +AA Q+ Sbjct: 150 DKIAAARARTE---PALDKVRE-FAMGNPLEATRVLVEEVRPLQQQWLAALEEMAALQER 205 Query: 239 DMKQAHADAKDSYRKAQIGMLAMGVLTLGLGFFFTFVITRSIVNPLKRAGSIAETISRGD 298 A DA D+Y A +L + + + G + ITRS+ P+++A ++A +++ GD Sbjct: 206 GAAVAMVDAADAYANAFSILLVLSLGAVVTGAGVAWRITRSVTEPVRKAVALARSVAGGD 265 Query: 299 LTHDFHDQGRDEAAHLVNALDAMQGNLATTLNEVKESAAVIAVASHEIARGNVDLSNRTE 358 LT + DE L AL M +LA + EV+ + IAVAS EIA GN DLS+RTE Sbjct: 266 LTARGESRADDEFGQLQRALTGMTASLAGIVAEVRHTTDTIAVASREIASGNADLSSRTE 325 Query: 359 SQASSLEETASSMEQLTSTVQQNAANAQQANQLVLSASDYATKGGRVVGDVVHTMGSIKE 418 SQASSLEETASSME+LTSTV+QNA NA+QANQLV+S +D A KGG VVG VV TM SIK+ Sbjct: 326 SQASSLEETASSMEELTSTVRQNAENARQANQLVVSTADVAVKGGEVVGQVVDTMASIKD 385 Query: 419 SSGKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKE 478 SS KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKE Sbjct: 386 SSRKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKE 445 Query: 479 IKELISDSVDKVDAGGKLVDEAGATMSEIVASVKHVADIMGEITAASQEQSAGIAEVNNA 538 IK LI DSV KVDAG KLVDEAG TM EIV+SVK V DIM EI AASQEQSAGI +VN A Sbjct: 446 IKSLIEDSVGKVDAGSKLVDEAGKTMDEIVSSVKRVTDIMSEIAAASQEQSAGIEQVNQA 505 Query: 539 IAQIDEITQQNAALVEQAAAAAESLQEQSDVLARAVAVFKL 579 + Q+DE+TQQNAALVE+AAAAAESLQEQ+ LA AV+VFKL Sbjct: 506 VGQMDEMTQQNAALVEEAAAAAESLQEQAAKLADAVSVFKL 546 >ref|ZP_08404611.1| methyl-accepting chemotaxis sensory transducer [Hylemonella gracilis ATCC 19624] gb|EGI78289.1| methyl-accepting chemotaxis sensory transducer [Hylemonella gracilis ATCC 19624] Length = 625 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 262/609 (43%), Positives = 364/609 (59%), Gaps = 33/609 (5%) Query: 69 IQHLKIGSRLAFGFCLILLLATAILLIGLWRMAELEASSEYVIDQKVAAMTSAMNMREAG 128 +++++IG+RL GF +IL+L + L+G+ RMA++ + + D+ + NM E Sbjct: 4 LKNMRIGARLGLGFGVILVLLAVVSLLGISRMAQVYKELQAITDENNEKVKLTENMSETI 63 Query: 129 SQLALALRKVVTPTDAAEGKAEDAHLGEILKAYAGFEKQITGL-----SADGRGKDLLAA 183 + + R VV T+ A +A L E Y+ E + + S KD LA Sbjct: 64 THIGALARDVVLQTEEAGIRAAHKSLLETRSGYSKLEADLAKMLESLASTSQAEKDTLAK 123 Query: 184 TSGESKKLFPLVEQIRQQVASNNYFDAAQQLKSDFLPAHEKWMASVAALAAFQQEDMKQA 243 T + + +++ + +N +A Q L D +PA +W A++ LA F+ + A Sbjct: 124 TKTIRARADAITDKVVELGLANRNAEATQMLTRDMVPAQREWQAAMDELADFEYKASDDA 183 Query: 244 HADAKDSYRKAQIGMLAMGVLTLGLGFFFTFVITRSIVNPLKRAGSIAETISRGDLTHDF 303 AK Y A ++ + V+ + +G F +VITRSI P+ RA ++AET++ GDL+ Sbjct: 184 EVRAKGVYETAMASIITLTVIAIAIGVFVAYVITRSITAPVGRAVTLAETVAAGDLSSRV 243 Query: 304 HDQGRDEAAHLVNALDAMQGNLATTLNEVKESAAVIAVASHEIARGNVDLSNRTESQASS 363 +G+DE A L+ +L MQ +L+ ++ V+ + +A AS EIA+GN DLS RTE+QASS Sbjct: 244 MVEGQDETAQLLRSLAHMQESLSRVVSTVRVGSESVATASAEIAQGNQDLSARTETQASS 303 Query: 364 LEETASSMEQLTSTVQQNAANAQQANQLVLSASDYATKGGRVVGDVVHTMGSIKESSGKI 423 LEETA+SMEQL+STV QNA NA+QANQL SAS A +GG VV V+ TM I +SS KI Sbjct: 304 LEETAASMEQLSSTVTQNADNARQANQLAQSASSVAVEGGEVVSQVIETMRGISDSSKKI 363 Query: 424 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELI 483 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AAKEIK LI Sbjct: 364 ADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAEAAKEIKTLI 423 Query: 484 SDSVDKVDAGGKLVDEAGATMSEIVASVKHVADIMGEITAASQEQSAGIAEVNNAIAQID 543 +DSV +V+AG LVD+AG MSEIV +K V D++G+I+AAS EQS G+A+V A+ Q+D Sbjct: 424 TDSVHRVEAGTTLVDQAGNKMSEIVQGIKRVTDLVGDISAASTEQSQGVAQVGEAVQQMD 483 Query: 544 EITQQNAALVEQAAAAAESLQEQSDVLARAVAVFKLKTAAQARPQSQPQHPA-------- 595 ++TQQNAALVE+ +AAA SL+ Q++ L +AVA+FKL ++ P+ Sbjct: 484 QVTQQNAALVEEMSAAANSLKSQANELVQAVAIFKLLDGHGGHGGARAAAPSGLGTHGAT 543 Query: 596 --------------------HKQSAAPVMNSPAAARTVNPPPAVAAARKPAVASLPPASG 635 ++ A + PA T P AA P+ +LP A+ Sbjct: 544 AASHAAPAVASPAAKPAAGDSQRPAVSRLARPAPTATAKPVTPPAARSAPSQTALPSAAT 603 Query: 636 ASKGKPATA 644 SK P A Sbjct: 604 PSKALPDAA 612 >ref|ZP_04764380.1| methyl-accepting chemotaxis sensory transducer [Acidovorax delafieldii 2AN] gb|EER58821.1| methyl-accepting chemotaxis sensory transducer [Acidovorax delafieldii 2AN] Length = 518 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 256/513 (49%), Positives = 329/513 (64%) Query: 71 HLKIGSRLAFGFCLILLLATAILLIGLWRMAELEASSEYVIDQKVAAMTSAMNMREAGSQ 130 +LKIG+RLA GF ++LL AIL +G++ + L++ E +++ + +A M + Sbjct: 5 NLKIGTRLALGFSVVLLFLAAILGMGVYSLGHLQSRMEEMVNSNNVKLAAANTMLDQIRD 64 Query: 131 LALALRKVVTPTDAAEGKAEDAHLGEILKAYAGFEKQITGLSADGRGKDLLAATSGESKK 190 + VV D A +A+ + + Y + + L A +GK LA Sbjct: 65 IYAIGAMVVLVPDEAGKQAQLKQVADARAKYGAAKATLEKLVASEQGKAALAKVDAALAA 124 Query: 191 LFPLVEQIRQQVASNNYFDAAQQLKSDFLPAHEKWMASVAALAAFQQEDMKQAHADAKDS 250 PL Q+ N +A + L + PA + + LA Q QA+ADA+ Sbjct: 125 AVPLSNQLFDLAVKNMTAEATEHLMTKAGPAMRAALDQLNNLADLQTRLSSQANADAEAE 184 Query: 251 YRKAQIGMLAMGVLTLGLGFFFTFVITRSIVNPLKRAGSIAETISRGDLTHDFHDQGRDE 310 YR A+ M+ +G+L + G + ITRSI P+ A +A T++ GDL+ DE Sbjct: 185 YRSARNWMIGLGLLAILAGVAIAWHITRSITRPITHAVEVARTVADGDLSSRIDVVSTDE 244 Query: 311 AAHLVNALDAMQGNLATTLNEVKESAAVIAVASHEIARGNVDLSNRTESQASSLEETASS 370 L+ AL M +LA + EV+ A +A A+ +IA GN DLS+RTE QASSLEETA+S Sbjct: 245 TGQLMRALQHMNDSLAKVVGEVRSGADSMATATSQIAAGNQDLSSRTEEQASSLEETAAS 304 Query: 371 MEQLTSTVQQNAANAQQANQLVLSASDYATKGGRVVGDVVHTMGSIKESSGKIVDIISVI 430 ME+LTSTV+QNA NA+QANQL L+AS A KGG VV VV TM +I SS KIVDII VI Sbjct: 305 MEELTSTVRQNADNARQANQLALTASSVAVKGGDVVSQVVQTMDAINSSSHKIVDIIGVI 364 Query: 431 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELISDSVDKV 490 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI DSV KV Sbjct: 365 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAEAAKEIKVLIDDSVSKV 424 Query: 491 DAGGKLVDEAGATMSEIVASVKHVADIMGEITAASQEQSAGIAEVNNAIAQIDEITQQNA 550 + G + V EAG TM EIV+SV+ V DIMGEITAASQEQ++GI +VN AIAQ+D++TQQNA Sbjct: 425 EQGSQQVGEAGKTMEEIVSSVRRVTDIMGEITAASQEQTSGIEQVNQAIAQMDQVTQQNA 484 Query: 551 ALVEQAAAAAESLQEQSDVLARAVAVFKLKTAA 583 ALVE+AAAAA+SLQ Q+ L++ V+VFKL A Sbjct: 485 ALVEEAAAAADSLQGQAGHLSQVVSVFKLAGGA 517