BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0982.p (707 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774669.1| DNA/RNA non-specific endonuclease [Herbaspir... 1026 0.0 ref|YP_002361424.1| DNA/RNA non-specific endonuclease [Methyloce... 509 e-142 ref|YP_003607825.1| DNA/RNA non-specific endonuclease [Burkholde... 393 e-107 ref|YP_004241031.1| DNA/RNA endonuclease G, NUC1 [Arthrobacter p... 276 1e-71 ref|YP_002782637.1| hypothetical protein ROP_54450 [Rhodococcus ... 264 4e-68 >ref|YP_003774669.1| DNA/RNA non-specific endonuclease [Herbaspirillum seropedicae SmR1] gb|ADJ62761.1| DNA/RNA non-specific endonuclease protein [Herbaspirillum seropedicae SmR1] Length = 707 Score = 1026 bits (2654), Expect = 0.0, Method: Composition-based stats. Identities = 558/715 (78%), Positives = 603/715 (84%), Gaps = 16/715 (2%) Query: 1 MDAQAVKDFRACVADTASERQRVRSLVACGQWREAEPDSERARAYALRQRNLGHPAGPES 60 MD +A+KDFRACVADTAS+RQRVR LVACGQWR AEPDSERARAYALRQRNLG GPES Sbjct: 1 MDERALKDFRACVADTASQRQRVRELVACGQWRTAEPDSERARAYALRQRNLGARGGPES 60 Query: 61 IIGDSEDFLRASFLAQGAAVARAVAYVEVNSDQSSELATGFLISPRLFLTNQHVIADAAA 120 IIGD+EDFLRASFLAQGAAVARAVAYVEV+S Q +E+ATGF++SPRLFLTNQHVIAD AA Sbjct: 61 IIGDTEDFLRASFLAQGAAVARAVAYVEVSSGQVNEVATGFMVSPRLFLTNQHVIADLAA 120 Query: 121 ARGTRLTFLRELDARGVPRATTSYLLAPERLALFSPADQLDYALIALGERQSGTATVEEL 180 ARGTR++FLRELD RGVPRA+TS+LLAP+RLALFS +DQLDYALIALGERQSGTAT + L Sbjct: 121 ARGTRVSFLRELDERGVPRASTSFLLAPQRLALFSASDQLDYALIALGERQSGTATADML 180 Query: 181 SFCPLSDQPDKHVIGMAANIIQHPSGWMKMISIRNNTVTARTEHTLLYETDTQQGSSGSP 240 FCPLSDQPDKHVIGM ANIIQHP GW+KMISIRNNTVTARTEHTLLYETDT+QGSSGSP Sbjct: 181 GFCPLSDQPDKHVIGMNANIIQHPGGWLKMISIRNNTVTARTEHTLLYETDTEQGSSGSP 240 Query: 241 VFNDDWQLVALHHWGEPYRDAGTGDQPLRKVNEGIRISALYRDLLARLPTLPPEARALLQ 300 VFNDDWQLVALHHWGEPYRDA + RKVNEGIRISA+YRDLL RLPTLP AR LLQ Sbjct: 241 VFNDDWQLVALHHWGEPYRDAASAQDTPRKVNEGIRISAIYRDLLQRLPTLPEAARPLLQ 300 Query: 301 EALSYQVASAPGALTV-ADNTASDMTQEISM---NNSGKD----IALQTATLTIPLEVTV 352 EALSYQ A+ P ASD +E SM N+SG D + Q ATLTIPLE+TV Sbjct: 301 EALSYQTAATPATAVAWPSAAASDTREETSMSTGNDSGADARTGVDAQAATLTIPLEITV 360 Query: 353 RVAGGAATVARTTTPDAGNAVLAPDNTSLQPPRRLSPPRPSAGAEALRIDPDYGNRSGYD 412 RVAG AT A + + P RRLSPPRP+ EALRIDPDY RSGYD Sbjct: 361 RVAGATATAASSPAAPSTPVPAQPQ------ARRLSPPRPTHAQEALRIDPDYSKRSGYD 414 Query: 413 AAFIPGAELPLPQPDAKLAGDIVPLLPTVAGAAGNDGELKYEHFSIKLLKRRRMAAFTAT 472 AFI G ++PLPQPD LA IVPLL A DGELKYEHFSIKLLK RR+AAFTAT Sbjct: 415 PAFIAGVQVPLPQPDGTLAAQIVPLL--AEDAVHGDGELKYEHFSIKLLKPRRLAAFTAT 472 Query: 473 NIDGTHYLAVDRGSGQVNAAEGDAWFRDPRVAAGSVLEQDFYSAWSTYFDRGHLTRRSDP 532 NIDG YL VDRGSG+VN AEGDAWFRDPRV G+VLEQDFY AWS YFDRGHLTRRSDP Sbjct: 473 NIDGARYLEVDRGSGRVNGAEGDAWFRDPRVPVGAVLEQDFYGAWSNYFDRGHLTRRSDP 532 Query: 533 SWGTPEEAERANADTFHFTNCSPQHFRFNQSATYWQGLERYVLENGVLAASSKGRLCVFQ 592 SWG+PEEAERANADTFHFTNCSPQHFRFNQSA YWQGLERYVLENGVLA+S+KGRLCVFQ Sbjct: 533 SWGSPEEAERANADTFHFTNCSPQHFRFNQSAVYWQGLERYVLENGVLASSTKGRLCVFQ 592 Query: 593 GPVFNDQVDLWADEVQIPSAFFKIVVWKGKQGLKAVGLLADQSALLSESRHSLGTPRDLP 652 GPVFNDQVDLWADEVQIPS+FFKIVVWKGKQGLKAV L+ADQSALLSESRHSLG P+ LP Sbjct: 593 GPVFNDQVDLWADEVQIPSSFFKIVVWKGKQGLKAVALVADQSALLSESRHSLGAPQALP 652 Query: 653 SVDVNHWRVAIPELERMTGLDFGSRVRAADTIADGKQPQVGEARLRITAFEQIRL 707 SV+VNHWRVA+PE+ERMTGLDFG VR ADTIA G+QPQVGEAR RIT+F+QIRL Sbjct: 653 SVEVNHWRVAVPEVERMTGLDFGKLVRQADTIAAGQQPQVGEARQRITSFDQIRL 707 >ref|YP_002361424.1| DNA/RNA non-specific endonuclease [Methylocella silvestris BL2] gb|ACK50062.1| DNA/RNA non-specific endonuclease [Methylocella silvestris BL2] Length = 720 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 325/737 (44%), Positives = 418/737 (56%), Gaps = 55/737 (7%) Query: 1 MDAQAVKDFRACVADTASERQRVRSLVACGQWREAEPDSERARAYALR-QRNLGHPAGPE 59 + A V R +A T+ ER + R+ VA G WR AEPD+ RA AYA R R GH Sbjct: 8 LRADTVTQIRERIAATSDERMKSRAKVASGDWRGAEPDNTRAVAYAARIDREAGHAEASR 67 Query: 60 SIIGDSEDFLRASFLAQGAAVARAVAYVEVNSDQSSELATGFLISPRLFLTNQHVIADAA 119 + DF A+FL GA RAVA + S S ATGFLIS LFLTNQHV+ DAA Sbjct: 68 G----TNDFQPAAFLPDGAKARRAVARTILESSGESRTATGFLISADLFLTNQHVVKDAA 123 Query: 120 AARGTRLTFLRELDARGVPRATTSYLLAPERLALFSPADQLDYALIALGERQSGTATVEE 179 A T++ F ELD RG R T++ L P+ L L S QLDYALIA+G R G + + Sbjct: 124 DATLTQILFDDELDERGEIRPATAFALDPDTLFLASEEAQLDYALIAVGARVRGAGALAD 183 Query: 180 LSFCPLSDQPDKHVIGMAANIIQHPSGWMKMISIRNNTVTARTEHT--LLYETDTQQGSS 237 FCPLS PD+H +G+ ANI+QHP G K++ +RNN + AR ++ L YETDT GSS Sbjct: 184 FGFCPLSRTPDRHQLGINANIVQHPEGRKKIVVLRNNLIVARDDNDGRLFYETDTLDGSS 243 Query: 238 GSPVFNDDWQLVALHHWGEPYRDAG-TGDQPLRKVNEGIRISALYRDLLARLPTLPPEAR 296 GSPVFND W +VALHH+GE D R VNEGIRIS++Y DL A++ L R Sbjct: 244 GSPVFNDLWDVVALHHYGEANEDVVLPSGSKTRSVNEGIRISSIYDDLSAKVAGLAGRGR 303 Query: 297 ALLQEALSYQVASAP--GALTVADNTASDMTQE--------------------ISMNNSG 334 LL++AL AP LT D +S Sbjct: 304 ELLEQALVLWKTDAPTEKKLTPRPRQTDDAASPAEAAAASGSRKAPPSPDPILVSKEAPA 363 Query: 335 KDIALQTATLTIPLEVTVRVAGGAATVARTTTPDAGNAVLAPDNTSLQPPRRLSPPRPSA 394 I AT+ +PLE+T+R+ G A+V+ L+P + R P P A Sbjct: 364 MPIPASEATIVLPLEITIRI-GTPASVSS----------LSPGGAA----ERALAPAPRA 408 Query: 395 GAEALRIDPDYGNRSGYDAAFIPGAELPLPQPDAKLAGDIVPLLPTVAGAAGNDGELKYE 454 AEA RID DY NR+G+D F+PG ++ L L I LL G GEL YE Sbjct: 409 LAEAKRIDRDYANRNGFDPTFVPGLDIDLATIVDPLKKKIAALLEPAEGRL--SGELIYE 466 Query: 455 HFSIKLLKRRRMAAFTATNIDGTHYLAVDRGSGQVNA----AEGDAWFRDPRVAAGSVLE 510 +FS+ + K RR+A TATNIDG Y+ +DR +GQ AEGD W++D R+ L Sbjct: 467 NFSVVMHKVRRIAILTATNIDGETYIEIDRKTGQPAEEQPRAEGDVWYKDTRINEPLTLT 526 Query: 511 QDFYSAWSTYFDRGHLTRRSDPSWGTPEEAERANADTFHFTNCSPQHFRFNQSATYWQGL 570 DFYS WS FDRGHLTRR+DP+WG A RANADTFHFTNCSPQH++FN+S +WQG+ Sbjct: 527 NDFYSGWSHIFDRGHLTRRNDPTWGP--NAARANADTFHFTNCSPQHWKFNESIEFWQGV 584 Query: 571 ERYVLENGVLAASSKGRLCVFQGPVFNDQVDLWADEVQIPSAFFKIVVWKGKQGLKAVGL 630 ERYVLE G+ RL V QGP+++ L+AD+V++P+AF+KIVVWKGK GLKAV L Sbjct: 585 ERYVLEQGLWETGFDKRLSVLQGPLYDAPQPLYADDVEVPNAFWKIVVWKGKGGLKAVAL 644 Query: 631 LADQSALLSESRHSLGTPRDLPSVDVNHWRVAIPELERMTGLDFGSRVRAADTIADGKQP 690 + DQ+ LLS R G P + V +R + ++ +GL + + DT A G P Sbjct: 645 VVDQTDLLSIMRRGGGQPDETTRAKVTQFRTTVADVASRSGLRLDA-LAPYDTAAGG-LP 702 Query: 691 QVGEARLRITAFEQIRL 707 VGEA+ +T+F QI++ Sbjct: 703 HVGEAQRVLTSFAQIKV 719 >ref|YP_003607825.1| DNA/RNA non-specific endonuclease [Burkholderia sp. CCGE1002] gb|ADG18314.1| DNA/RNA non-specific endonuclease [Burkholderia sp. CCGE1002] Length = 274 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 181/259 (69%), Positives = 211/259 (81%) Query: 449 GELKYEHFSIKLLKRRRMAAFTATNIDGTHYLAVDRGSGQVNAAEGDAWFRDPRVAAGSV 508 GELKYEHFS+ L K +RMA FTATNIDG YL VDR +G+VN++EGD WF+DPRV+ Sbjct: 16 GELKYEHFSLILHKSKRMAMFTATNIDGQRYLEVDRKTGKVNSSEGDVWFKDPRVSNSFF 75 Query: 509 LEQDFYSAWSTYFDRGHLTRRSDPSWGTPEEAERANADTFHFTNCSPQHFRFNQSATYWQ 568 L+Q FYS WSTYFDRGHLTRRSDP+WGTP+EAER NADTFHF+NCSPQHFRFN+SA YWQ Sbjct: 76 LDQTFYSQWSTYFDRGHLTRRSDPTWGTPDEAERPNADTFHFSNCSPQHFRFNESAVYWQ 135 Query: 569 GLERYVLENGVLAASSKGRLCVFQGPVFNDQVDLWADEVQIPSAFFKIVVWKGKQGLKAV 628 GLERYVLENGVL +K RLCV QGP+F+D++DLWAD+VQIPS+FFKIVVWK G KAV Sbjct: 136 GLERYVLENGVLDNETKRRLCVIQGPIFDDKIDLWADDVQIPSSFFKIVVWKSAAGTKAV 195 Query: 629 GLLADQSALLSESRHSLGTPRDLPSVDVNHWRVAIPELERMTGLDFGSRVRAADTIADGK 688 GL+ADQ LLSE+R SLG P DLP V+VNHWRV I +E+ TGL+FG+ +R ADTI Sbjct: 196 GLVADQLNLLSEARRSLGAPHDLPVVNVNHWRVPITAIEKKTGLEFGALIRNADTIDQAD 255 Query: 689 QPQVGEARLRITAFEQIRL 707 QP VGEA++ I F IRL Sbjct: 256 QPDVGEAKVLIRDFSAIRL 274 >ref|YP_004241031.1| DNA/RNA endonuclease G, NUC1 [Arthrobacter phenanthrenivorans Sphe3] gb|ADX72897.1| DNA/RNA endonuclease G, NUC1 [Arthrobacter phenanthrenivorans Sphe3] Length = 713 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 224/661 (33%), Positives = 323/661 (48%), Gaps = 72/661 (10%) Query: 38 DSERARAYALRQRNLGHPAGPESIIGDSEDFLRASFLAQGAAVARAVAYVEVNSD-QSSE 96 D+ R A +G E IIG S + L +FL G AV+R+V V V Q Sbjct: 63 DAIRTTAETTSPSAVGADPVLERIIGGS-NLLGIAFLELGTAVSRSVGRVIVRDRFQIRS 121 Query: 97 LATGFLISPRLFLTNQHVIADAAAARGTRLTFLRELDARGVPRATTSYLLAPERLALFSP 156 TGF+ISPRL LTN HV+ DA +AR +RL F + G+P AT+ + L P+ F Sbjct: 122 FGTGFMISPRLALTNNHVLRDAESARHSRLEFNFQNGLNGLPLATSQFDLEPD--TFFRT 179 Query: 157 ADQLDYALIALGERQSGTAT-----VEELSFCPLSDQPDKHVIGMAANIIQHPSGWMKMI 211 LD ++A+ R T + F + + K ++G + NIIQHP G K + Sbjct: 180 DAGLDVTVVAVAARSRADGTGASLPLASFGFNRTTKEQGKILLGESINIIQHPEGQEKQL 239 Query: 212 SIRNNTVTARTEHTLLYETDTQQGSSGSPVFNDDWQLVALHHWGEPYR------------ 259 +++ N + R + L Y TDT GSSGSP+FN+ W+++ LHH G P R Sbjct: 240 ALQQNELIDRFDQFLHYRTDTSPGSSGSPLFNNQWEVLGLHHSGVPARNEAGDILTVDGT 299 Query: 260 --DAGTGDQPLRKV-NEGIRISALYRDLLARLPTLPPEARALLQEALSYQVASAPGALTV 316 DA + ++ + NEG+RIS++ L + + RALL++ L+ V Sbjct: 300 VWDATQDELKIQWIANEGVRISSILAWLGTHADAMNVQERALLEDVLNPPSLPVEPPAPV 359 Query: 317 ADNTASDMTQEISMNNSGKDIALQTA-TLTIPLEVTVRVAGGAATVARTTTPDAGNAVLA 375 + + TQ + +++ +A + A ++TIPL +TVR+ V DA Sbjct: 360 QEQQDTARTQPAAQHSAA--LAGEGAVSVTIPLHITVRLGTAQGPV------DAAAG--- 408 Query: 376 PDNTSLQPPRRLSPPRPSAGAEALRIDPDYGNRSGYDAAFIPGAELPLPQPDAKLAGDIV 435 R + P + EA+ IDPDY R GYDA F+ G +PLP A+ D Sbjct: 409 ----------RSNVPAAATAVEAVAIDPDYPRRKGYDAEFL-GTPVPLPVLTAEQRADTA 457 Query: 436 PLLPTVAGAAGNDGELKYEHFSIKLLKRRRMAAFTATNIDGTHYLAVDRGSGQVNAAEGD 495 L A + L Y HFS+ + + RR+A +TA N+DG + R + + Sbjct: 458 --LNQAAAPGQDPTVLNYHHFSLVMQRTRRLALYTAVNVDGHLSKSPKR--------DRN 507 Query: 496 AWFRDPRVAAGSVLEQDFYSAWSTYFDRGHLTRRSDPSWGTPEEAERANADTFHFTNCSP 555 W+ DPR+ +D Y+ FDRGHL RR DP+WG + A AN DTFHFTNCSP Sbjct: 508 KWYFDPRLKRSEQTGEDLYA--DNDFDRGHLVRRLDPAWGPDDVALAANDDTFHFTNCSP 565 Query: 556 QHFRFNQSATYWQGLERYVLENGVLAASSKGRLCVFQGPVFNDQVDLWADEVQIPSAFFK 615 QH +FNQ A+ W GLE Y+L+ A + + RL VF GPVF D +IP AF+K Sbjct: 566 QHKKFNQGASLWAGLEDYLLDR---ARAERLRLTVFTGPVFAAG-DPEFQGTRIPLAFWK 621 Query: 616 IVVWKGKQGL-KAVGLLADQSALLSESRHSLGTPRDLPSVDVNHWRVAIPELERMTGLDF 674 I V++ G A G + Q L+ + TP ++V + + +TGLDF Sbjct: 622 IPVFRRPGGSPSASGYMISQHELVEDMLREAFTPAT--------FQVPVRRISELTGLDF 673 Query: 675 G 675 Sbjct: 674 A 674 >ref|YP_002782637.1| hypothetical protein ROP_54450 [Rhodococcus opacus B4] dbj|BAH53692.1| hypothetical protein [Rhodococcus opacus B4] Length = 639 Score = 264 bits (675), Expect = 4e-68, Method: Composition-based stats. Identities = 219/632 (34%), Positives = 292/632 (46%), Gaps = 117/632 (18%) Query: 59 ESIIGDSEDFLRASFLAQGAAVARAVAYVEVNSDQSS--ELATGFLISPRLFLTNQHVIA 116 E I+G + DF+ A +L G A AR++ V + + + TGFL+SP L LTN HV+ Sbjct: 92 EKILG-TADFVGARYLDAGVAAARSIGRVNIRDARGALQGYGTGFLVSPTLLLTNHHVLP 150 Query: 117 DAAAARGTRLTFLRELDARGVPRATTSYLLAPERLALFSPADQLDYALIALGERQSGTAT 176 DA AR + + F + G PR + L P R F + D+AL+A+G + T Sbjct: 151 DADTARSSVIEFDYQDGVDGKPRPVQMFPLDPARF--FLADRERDFALVAVG---AEPGT 205 Query: 177 VEELSFCPLSDQPDKHVIGMAANIIQHPSGWMKMISIRNNTVTARTEHTLLYETDTQQGS 236 + + F PL K VIG I+QHP G K I++R N + E L Y DT+ GS Sbjct: 206 LAQFGFNPLIQAEGKAVIGEFVTIVQHPRGDKKQIALRENRIVDIPERFLHYSADTEPGS 265 Query: 237 SGSPVFNDDWQLVALHHWG--EPYRDAGTGDQPLRKVNEGIRISALYRDLLARLPTLPPE 294 SGSPVFND W++VALHH P G +NEG+RIS + R L P Sbjct: 266 SGSPVFNDQWEVVALHHASVRAPQHTEFGG-----VLNEGVRISRILE--YVRAQNLTPP 318 Query: 295 ARALLQEALSYQVASAPGALTVADNTASDMTQEISMNNSGKDIALQTATLTIPLEVTVRV 354 R L+ E L + A+ A+ D +E+ T+ +PLE+TVR+ Sbjct: 319 CRDLVDEVLGAERAAP------AERPVPDREREV--------------TVRVPLEITVRL 358 Query: 355 AGGAATVARTTTPDAGNAVLAPDNTSLQPPRRLSPPRPSAGAEALRIDPDYGNRSGYDAA 414 S P+A EA+ IDP+Y R GYD Sbjct: 359 G--------------------------------SVESPAAEPEAISIDPNYATRGGYDPN 386 Query: 415 FIPGAELPLPQPDAKLAGDIVPLLPTVAGAAGNDGELKYEHFSIKLLKRRRMAAFTATNI 474 F+ +PLP P + P+VA ELKY HFS+ + + R +A FTA NI Sbjct: 387 FL---RVPLPLPGS----------PSVASP-----ELKYHHFSVVMHRERALALFTAVNI 428 Query: 475 DGTHYLAVDRGSGQVNAAEGDAWFRDPRVAAGSVLEQDFYSAWSTYFDRGHLTRRSDPSW 534 DG + R S D W DPR+ A +D Y DRGHL RR DP+W Sbjct: 429 DGRQSQSPRRDS--------DRWILDPRLPADQQTGEDVYR--DNPLDRGHLVRRLDPAW 478 Query: 535 GTPEEAERANADTFHFTNCSPQHFRFNQSATYWQGLERYVLENGVLAASSKGRLCVFQGP 594 G +A AN DTFHFTNC+PQH FN T W GLE YVL+N A ++ + V GP Sbjct: 479 GPLAKA--ANDDTFHFTNCTPQHHNFNAGQTLWLGLEDYVLKN---ADTADLSVSVVTGP 533 Query: 595 VFNDQVDLWADEVQIPSAFFKIVVWKGKQG-LKAVGLLADQSALLS-----ESRHSLGTP 648 V D V +P F+K V + G L G L Q+ALL E S G Sbjct: 534 VLAPD-DPEYRGVALPRQFWKTVATVKQDGTLSVTGYLLSQAALLDEFAEGEEAFSYGAY 592 Query: 649 RDLPSVDVNHWRVAIPELERMTGLDFGSRVRA 680 R ++V + + R+TGLD + V A Sbjct: 593 RT--------FQVPVRRIARLTGLDLDAYVAA 616