BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0981.p (254 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774668.1| transcription regulator protein [Herbaspiril... 332 4e-89 ref|ZP_08868259.1| transcriptional regulator, AraC family [Azosp... 183 2e-44 gb|EGP57172.1| AraC family transcriptional regulator [Agrobacter... 169 3e-40 ref|YP_003882602.1| transcriptional regulator [Dickeya dadantii ... 162 7e-38 ref|NP_354444.2| AraC family transcriptional regulator [Agrobact... 161 9e-38 >ref|YP_003774668.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62760.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 332 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 194/250 (77%), Positives = 219/250 (87%), Gaps = 1/250 (0%) Query: 5 SRPHPDTAPPVAQLHLRSYREESLAHRHDFPQLVLPLAGHLAMDIAGREGLADTATAAFV 64 S PHPD APP+AQLHLRSYR+ESLAHRHDFPQLVLPLAGHLA+DI GREG AD AT AFV Sbjct: 5 SLPHPDLAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADAATGAFV 64 Query: 65 EAGAWHETRAGGSNRALVLDLAPHAVDTLQLEALARRAFVPLTAAAGKLVEFMAVALSDT 124 E GA H TRAGG NR+LVLDLAP V+ LQLE LA+R F+PL+ AAGKLVEFMAV+L+ Sbjct: 65 EPGARHATRAGGENRSLVLDLAPATVNALQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQA 124 Query: 125 RPAGNTLQHWVPLLLDALTQQ-PQALSRLRLMLARVEARAEHPWTVAQMAELAAISPSRL 183 R + LQHWVPLLLD L Q+ PQALSRLR M+A+VEA+ HPWTVAQMAE AAISPSRL Sbjct: 125 RSSPAMLQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRL 184 Query: 184 HEWFRAELDTSPRAWLAEVRVARACQLLRTSSLPLAQIAQRCGYGDQSALTHALRKLRGT 243 HEWFRAELD+SPRAWLAEVR+A+ACQLLRTS+LPLAQ+AQRCGY DQSALTHA+R+LRG Sbjct: 185 HEWFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGV 244 Query: 244 TPSAYRKSYL 253 TP++YRK+YL Sbjct: 245 TPASYRKNYL 254 >ref|ZP_08868259.1| transcriptional regulator, AraC family [Azospirillum amazonense Y2] gb|EGY02148.1| transcriptional regulator, AraC family [Azospirillum amazonense Y2] Length = 257 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 113/246 (45%), Positives = 148/246 (60%), Gaps = 9/246 (3%) Query: 16 AQLHLRSYREESLAHRHDFPQLVLPLAGHLAMDIAGREGLADTATAAFVEAGAWHETRAG 75 + L R YR H HD Q+VLP G L M++ GR G D A AAFV G H RA Sbjct: 8 SHLSFRRYRSAGFCHAHDHAQIVLPCQGTLEMEVGGRGGRVDAAVAAFVLPGEVHCQRAE 67 Query: 76 GSNRALVLDLA----PHAVDTLQLEALARRAFVPLTAAAGKLVEFMAVALSDTRPAGNTL 131 G NR L++D A A D LE L RR F+P+T A +L++F+ + + G L Sbjct: 68 GDNRFLIVDCAGGEGTGAPDERMLERLGRRTFLPMTPAVRRLLDFITLTAGNADGGGRNL 127 Query: 132 ----QHWVPLLLDALTQQP-QALSRLRLMLARVEARAEHPWTVAQMAELAAISPSRLHEW 186 +HW PLLLD L +P + SRL +LAR+EA E PWTV MA A +S SRLH Sbjct: 128 DGLARHWTPLLLDTLMAEPARPASRLHALLARLEAAPERPWTVEVMARTAGLSASRLHAL 187 Query: 187 FRAELDTSPRAWLAEVRVARACQLLRTSSLPLAQIAQRCGYGDQSALTHALRKLRGTTPS 246 FR ELD +P+A++A +R+AR L +++LP+AQIA + GY DQSALT ALR+ G TP+ Sbjct: 188 FREELDQTPQAYVASLRLARVMDQLASTTLPIAQIAYQSGYADQSALTRALRRAVGLTPA 247 Query: 247 AYRKSY 252 AYR+ + Sbjct: 248 AYRRQH 253 >gb|EGP57172.1| AraC family transcriptional regulator [Agrobacterium tumefaciens F2] Length = 252 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 98/244 (40%), Positives = 140/244 (57%), Gaps = 1/244 (0%) Query: 10 DTAPPVAQLHLRSYREESLAHRHDFPQLVLPLAGHLAMDIAGREGLADTATAAFVEAGAW 69 D+ A +RSYREE RH F Q+VLPL+G L +D+AGR+ T F+ +GA Sbjct: 6 DSVMMAASADIRSYREERPKERHGFVQIVLPLSGRLQIDVAGRQDELSTGRGVFIHSGAL 65 Query: 70 HETRAGGSNRALVLDLAPHAVDTLQLEALARRAFVPLTAAAGKLVEFMAVALSDTRPAGN 129 H A SN +LV+D+ V LE A F+ + +L+ +M + P + Sbjct: 66 HTQEATASNHSLVVDIDEGTVPEQTLERFAHAPFLDVAQDTRQLIAYMRSVIGSDGPRDD 125 Query: 130 TLQHWVPLLLDAL-TQQPQALSRLRLMLARVEARAEHPWTVAQMAELAAISPSRLHEWFR 188 W PLL+D+L T++ RL+ + A V+A PWT+ +A AAIS SRLH F Sbjct: 126 IAGLWAPLLVDSLATEKTDIRRRLQALAAVVKAEPFFPWTIEMLAACAAISESRLHALFL 185 Query: 189 AELDTSPRAWLAEVRVARACQLLRTSSLPLAQIAQRCGYGDQSALTHALRKLRGTTPSAY 248 E SP WLAE+R+ + C LLR S+LP+A+IA + G+ DQ+ALT A+R G TP+AY Sbjct: 186 EEFGLSPHRWLAELRMDKVCALLRQSTLPIAEIALQAGFSDQTALTRAMRNAMGETPAAY 245 Query: 249 RKSY 252 R+++ Sbjct: 246 RRAF 249 >ref|YP_003882602.1| transcriptional regulator [Dickeya dadantii 3937] gb|ADM98045.1| Transcriptional regulator [Dickeya dadantii 3937] Length = 254 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 99/239 (41%), Positives = 142/239 (59%), Gaps = 1/239 (0%) Query: 13 PPVAQLHLRSYREESLAHRHDFPQLVLPLAGHLAMDIAGREGLADTATAAFVEAGAWHET 72 P L +R Y HRHD QLVLPL+G L++DI+G+ D AA+V+ H Sbjct: 4 PNAFMLSIRGYGALEAPHRHDHSQLVLPLSGSLSIDISGQSAQLDRRLAAYVDRHFPHAQ 63 Query: 73 RAGGSNRALVLDLAPHAVDTLQLEALARRAFVPLTAAAGKLVEFMAVALSDTRPAGNTLQ 132 ++ G+N+ L++D+ P +D L + LA F+ L A L+++M L R + +Q Sbjct: 64 QSRGANQFLIVDVEPDHLDPLVADYLASCRFLSLAPEANNLIDYMGTMLVKGRVPDSRIQ 123 Query: 133 HWVPLLLDALTQQ-PQALSRLRLMLARVEARAEHPWTVAQMAELAAISPSRLHEWFRAEL 191 W PLLLDALT + PQ SRL +++ +++ WT MA+ A +S SRLH FR E Sbjct: 124 LWAPLLLDALTGEGPQPRSRLAGLISAIDSDPFLDWTTEFMAQQAGMSVSRLHAVFRRER 183 Query: 192 DTSPRAWLAEVRVARACQLLRTSSLPLAQIAQRCGYGDQSALTHALRKLRGTTPSAYRK 250 DT+P AWLA VR+ R L T+++ +A+IA R Y DQSALT A+RK G TP+A+R+ Sbjct: 184 DTTPHAWLARVRLGRVQHWLATTNVSIAEIAYRGRYADQSALTRAMRKATGLTPAAFRQ 242 >ref|NP_354444.2| AraC family transcriptional regulator [Agrobacterium tumefaciens str. C58] gb|AAK87229.2| transcriptional regulator, AraC family [Agrobacterium tumefaciens str. C58] Length = 244 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 94/238 (39%), Positives = 132/238 (55%), Gaps = 1/238 (0%) Query: 15 VAQLHLRSYREESLAHRHDFPQLVLPLAGHLAMDIAGREGLADTATAAFVEAGAWHETRA 74 VA +R+YR+E RH F Q+VLP++GHL +D+AGR+ T F+ A H A Sbjct: 3 VASADIRTYRQERPRERHGFVQIVLPVSGHLRIDVAGRQDELSTGRGVFIHRDAPHTQEA 62 Query: 75 GGSNRALVLDLAPHAVDTLQLEALARRAFVPLTAAAGKLVEFMAVALSDTRPAGNTLQHW 134 N +LV+D+ V LE AR F+ + +L+ +M + + W Sbjct: 63 TDINHSLVVDIDESVVSERTLEKFARTPFLDIAPDTRQLITYMRGVIGTDGRRDDVTGLW 122 Query: 135 VPLLLDALTQQPQAL-SRLRLMLARVEARAEHPWTVAQMAELAAISPSRLHEWFRAELDT 193 PLL+D+L + + RLR + A V A PWT+ +A A+IS SRLH F E Sbjct: 123 APLLVDSLANERADIRKRLRWLGAVVGAEPFFPWTIDMLAACASISESRLHALFIEEFGL 182 Query: 194 SPRAWLAEVRVARACQLLRTSSLPLAQIAQRCGYGDQSALTHALRKLRGTTPSAYRKS 251 SP WL +R+ + C LLR SSLP+A+IA R G+ DQ+ALT ALR G TP+AYR++ Sbjct: 183 SPHRWLVGLRMDKVCTLLRESSLPIAEIALRSGFSDQTALTRALRNAVGETPAAYRRN 240