BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0977.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774664.1| drug/metabolite transporter (DMT) superfamil... 492 e-137 gb|EGP57173.1| hypothetical protein Agau_C201374 [Agrobacterium ... 324 1e-86 ref|ZP_08528256.1| hypothetical protein AGRO_2239 [Agrobacterium... 323 2e-86 ref|YP_004278631.1| integral membrane protein [Agrobacterium sp.... 319 4e-85 ref|NP_354443.1| hypothetical protein Atu1437 [Agrobacterium tum... 317 2e-84 >ref|YP_003774664.1| drug/metabolite transporter (DMT) superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ62756.1| permease of the drug/metabolite transporter (DMT) superfamily protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 281/312 (90%), Positives = 293/312 (93%) Query: 1 MRSNPILQGIFYSALAGAAWGLVFLAPELTRAFSPWQLTAGRYLAYGLFAALLIAPRIKK 60 M S ILQGI YSALAGAAWGLVFLAPELTR+FSPWQLTAGRYLAYGLFA +LIAPR+++ Sbjct: 1 MSSPMILQGILYSALAGAAWGLVFLAPELTRSFSPWQLTAGRYLAYGLFAGVLIAPRLRR 60 Query: 61 LLPHLGRAEWRALVWLSLLGNVVYYVFLASAVQLGGMAMTSLVIGFLPVAVSIIGSRGHG 120 LLPHLGR EWRALVWLSLLGNVVYYVFLASAVQLGGMAMTSLVIGFLPVAVSIIGSRG G Sbjct: 61 LLPHLGRDEWRALVWLSLLGNVVYYVFLASAVQLGGMAMTSLVIGFLPVAVSIIGSRGEG 120 Query: 121 AVSLRKLAPSLALGLAGIACVAWQSLSGSAGGDMKQSVIGFFCALAALVSWTTYAVGNSR 180 AV LRKL PSLALGLAGIACVAWQSLS SA G + SVIGFFCALAAL+SWTTYAVGNSR Sbjct: 121 AVPLRKLVPSLALGLAGIACVAWQSLSVSAAGQARDSVIGFFCALAALISWTTYAVGNSR 180 Query: 181 WLARLHEVSAHDWNLLIGVVTGLLSLFIAVPAFTVMLQPHPGSEWMHFVAVSAGVAIFAS 240 WLARLH +SAHDWNLLIGVVTGLLSLF+AVPAFTVMLQPHPG +W+HF AVSAGVAI AS Sbjct: 181 WLARLHHISAHDWNLLIGVVTGLLSLFVAVPAFTVMLQPHPGHDWLHFAAVSAGVAICAS 240 Query: 241 LFGNACWNKASRLLPLTMIGQMILFETLFALLYGFLWEQRWPTLLEIAAMVLVTVSVLLC 300 LFGNACWNKASRLLPLTMIGQMILFETLFALLYGFLWEQRWPTLLEIAAMVLVT SVLLC Sbjct: 241 LFGNACWNKASRLLPLTMIGQMILFETLFALLYGFLWEQRWPTLLEIAAMVLVTASVLLC 300 Query: 301 VSAHRVDEGGGH 312 VSAHR+DEGGGH Sbjct: 301 VSAHRIDEGGGH 312 >gb|EGP57173.1| hypothetical protein Agau_C201374 [Agrobacterium tumefaciens F2] Length = 309 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 174/301 (57%), Positives = 229/301 (76%) Query: 9 GIFYSALAGAAWGLVFLAPELTRAFSPWQLTAGRYLAYGLFAALLIAPRIKKLLPHLGRA 68 G+FY LAGA WG +FLAP+L FS QL+ RYL YGL + ++I PR+K++ H G Sbjct: 7 GVFYGILAGALWGGIFLAPKLVPDFSALQLSTARYLTYGLISLIIIGPRLKRVSAHFGAR 66 Query: 69 EWRALVWLSLLGNVVYYVFLASAVQLGGMAMTSLVIGFLPVAVSIIGSRGHGAVSLRKLA 128 EW AL WLS++GN+ YYVF+++AV+L G+A TS++IGFLPVAV+IIGSR HGAVSLR+L Sbjct: 67 EWIALGWLSMIGNIAYYVFISTAVKLSGVAFTSIIIGFLPVAVTIIGSRDHGAVSLRRLW 126 Query: 129 PSLALGLAGIACVAWQSLSGSAGGDMKQSVIGFFCALAALVSWTTYAVGNSRWLARLHEV 188 PSLA G GI ++WQSL+ + G ++G CAL AL SWT +AVGN+RWL+RLH+V Sbjct: 127 PSLAFGAIGIIGISWQSLTENDAGLDVSRLMGLACALGALASWTAFAVGNARWLSRLHDV 186 Query: 189 SAHDWNLLIGVVTGLLSLFIAVPAFTVMLQPHPGSEWMHFVAVSAGVAIFASLFGNACWN 248 SA DWN++ GVVTG L+L +A+PAF + H EW+HF+A++AG+ AS+ GNA WN Sbjct: 187 SADDWNMMTGVVTGGLALVLAIPAFAFGGESHSSGEWLHFMAIAAGLGFTASILGNAFWN 246 Query: 249 KASRLLPLTMIGQMILFETLFALLYGFLWEQRWPTLLEIAAMVLVTVSVLLCVSAHRVDE 308 + SR+LPLTM+GQMILFETLFALLYGFLWE R PTL+E+ A+ V +SV+LC+ AHR ++ Sbjct: 247 RMSRMLPLTMVGQMILFETLFALLYGFLWEGRGPTLIEVVAICSVVLSVILCMRAHRPEK 306 Query: 309 G 309 Sbjct: 307 A 307 >ref|ZP_08528256.1| hypothetical protein AGRO_2239 [Agrobacterium sp. ATCC 31749] gb|EGL64698.1| hypothetical protein AGRO_2239 [Agrobacterium sp. ATCC 31749] Length = 314 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 173/301 (57%), Positives = 227/301 (75%) Query: 9 GIFYSALAGAAWGLVFLAPELTRAFSPWQLTAGRYLAYGLFAALLIAPRIKKLLPHLGRA 68 G+FY LAGA WG +FLAP+L FS QL+ RYL YGL + ++I PR+K++ H G Sbjct: 12 GVFYGMLAGALWGGIFLAPKLVPDFSALQLSTARYLTYGLISLIIIGPRLKRVSAHFGAR 71 Query: 69 EWRALVWLSLLGNVVYYVFLASAVQLGGMAMTSLVIGFLPVAVSIIGSRGHGAVSLRKLA 128 EW AL WLS++GN+ YYVF+++AV+L G+A TS++IGFLPVAV+IIGSR HGAVSL++L Sbjct: 72 EWIALGWLSMIGNIAYYVFISTAVKLSGVAFTSIIIGFLPVAVTIIGSRDHGAVSLKRLW 131 Query: 129 PSLALGLAGIACVAWQSLSGSAGGDMKQSVIGFFCALAALVSWTTYAVGNSRWLARLHEV 188 PSLA G GI ++WQSL+ + G +IG CAL AL SWT +AVGN+RWL+RLH+V Sbjct: 132 PSLAFGAIGIVGISWQSLTENDAGLDVSRLIGLACALGALASWTAFAVGNARWLSRLHDV 191 Query: 189 SAHDWNLLIGVVTGLLSLFIAVPAFTVMLQPHPGSEWMHFVAVSAGVAIFASLFGNACWN 248 SA DWN++ GVVTG L+L +A+PAF + H +W+HF A++AG+ AS+ GNA WN Sbjct: 192 SADDWNMMTGVVTGGLALLLAIPAFGFGGESHSSGDWLHFAAIAAGLGFTASILGNALWN 251 Query: 249 KASRLLPLTMIGQMILFETLFALLYGFLWEQRWPTLLEIAAMVLVTVSVLLCVSAHRVDE 308 + SR+LPLTM+GQMILFETLFALLYGFLWE R PT +EI A+ V +SV+LC+ AHR ++ Sbjct: 252 RMSRMLPLTMVGQMILFETLFALLYGFLWEGRGPTFVEIVAICSVVLSVVLCMRAHRPEK 311 Query: 309 G 309 Sbjct: 312 A 312 >ref|YP_004278631.1| integral membrane protein [Agrobacterium sp. H13-3] gb|ADY64311.1| integral membrane protein [Agrobacterium sp. H13-3] Length = 309 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 171/297 (57%), Positives = 225/297 (75%) Query: 9 GIFYSALAGAAWGLVFLAPELTRAFSPWQLTAGRYLAYGLFAALLIAPRIKKLLPHLGRA 68 G+ Y +AGA WG +FLAP+L FS QL+ RYL YGL + ++I PR+K++ H G Sbjct: 7 GVIYGMMAGALWGAIFLAPKLVPDFSALQLSTARYLTYGLISLVIIGPRLKRVSAHFGAR 66 Query: 69 EWRALVWLSLLGNVVYYVFLASAVQLGGMAMTSLVIGFLPVAVSIIGSRGHGAVSLRKLA 128 EW AL WLS++GN+ YYVF+++AV+L G+A TS++IGFLPVAV+IIG+R HGAVSL++L Sbjct: 67 EWIALGWLSMIGNIAYYVFISTAVKLSGVAFTSIIIGFLPVAVTIIGTRDHGAVSLKRLW 126 Query: 129 PSLALGLAGIACVAWQSLSGSAGGDMKQSVIGFFCALAALVSWTTYAVGNSRWLARLHEV 188 PSLA G GI ++WQSL+ S G +IG CAL AL SWT +AVGN+RWL+RLH+V Sbjct: 127 PSLAFGAIGIIGISWQSLTESDAGLDVSRLIGLACALGALASWTAFAVGNARWLSRLHDV 186 Query: 189 SAHDWNLLIGVVTGLLSLFIAVPAFTVMLQPHPGSEWMHFVAVSAGVAIFASLFGNACWN 248 SA DWN++ GVVTG L+L +A+PAF + H +W+HF A++AG+ AS+ GNA WN Sbjct: 187 SADDWNMMTGVVTGGLALALAIPAFAFGGESHSSKDWLHFAAIAAGLGFTASILGNALWN 246 Query: 249 KASRLLPLTMIGQMILFETLFALLYGFLWEQRWPTLLEIAAMVLVTVSVLLCVSAHR 305 + SRLLPLTM+GQMILFETLFALLYGFLWE R PT++E+ A+ V +SV+LC+ AHR Sbjct: 247 RMSRLLPLTMVGQMILFETLFALLYGFLWEGRGPTIVEVLAICSVVLSVILCMRAHR 303 >ref|NP_354443.1| hypothetical protein Atu1437 [Agrobacterium tumefaciens str. C58] gb|AAK87228.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 310 Score = 317 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 171/297 (57%), Positives = 223/297 (75%) Query: 9 GIFYSALAGAAWGLVFLAPELTRAFSPWQLTAGRYLAYGLFAALLIAPRIKKLLPHLGRA 68 G+FY LAGA WG +FLAP+L FS QL+ RYL YGL + ++I PR+K++ H G Sbjct: 8 GVFYGMLAGALWGGIFLAPKLVPDFSALQLSTARYLTYGLISLIIIGPRLKRVSAHFGAR 67 Query: 69 EWRALVWLSLLGNVVYYVFLASAVQLGGMAMTSLVIGFLPVAVSIIGSRGHGAVSLRKLA 128 EW AL WLS++GN+ YYVF+++AV+L G+A TS++IGFLPVAV+IIGSR HGAVSL++L Sbjct: 68 EWIALGWLSMIGNIAYYVFISTAVKLSGVAFTSIIIGFLPVAVTIIGSRDHGAVSLKRLW 127 Query: 129 PSLALGLAGIACVAWQSLSGSAGGDMKQSVIGFFCALAALVSWTTYAVGNSRWLARLHEV 188 PSLA G GI ++WQSL+ + G +IG AL AL SWT +AVGN+RWL+RLH+V Sbjct: 128 PSLAFGAIGIVGISWQSLTENDAGLDVSRLIGLASALGALASWTAFAVGNARWLSRLHDV 187 Query: 189 SAHDWNLLIGVVTGLLSLFIAVPAFTVMLQPHPGSEWMHFVAVSAGVAIFASLFGNACWN 248 SA DWN++ GVVTG L+L +A+PAF + H +W+HF A++AG+ AS+ GNA WN Sbjct: 188 SADDWNMMTGVVTGGLALLLAIPAFGFGGESHSSGDWLHFAAIAAGLGFTASILGNAFWN 247 Query: 249 KASRLLPLTMIGQMILFETLFALLYGFLWEQRWPTLLEIAAMVLVTVSVLLCVSAHR 305 + SR+LPLTM+GQMILFETLFALLYGFLWE PT +EI A+ V +SV+LC+ AHR Sbjct: 248 RMSRMLPLTMVGQMILFETLFALLYGFLWEGHGPTFVEIVAICSVVLSVVLCMRAHR 304